Selection of RNA aptamers against recombinant transforming growth factor-beta type III receptor displayed on cell surface.

Abstract:

:In most cases, anti-protein aptamers are selected by systematic evolution of ligands by exponential enrichment (SELEX) using purified recombinant protein targets. Cell surface proteins, however, are not easy targets for SELEX due to the difficulties associated with their purification. Here, we developed a novel SELEX procedure (referred to as TECS-SELEX) in which cell-surface displayed recombinant protein is directly used as the selection target. Using this method, we isolated RNA aptamers against transforming growth factor-beta type III receptor expressed on Chinese hamster ovary (CHO) cells. One of the RNA aptamers has a dissociation constant in the 1 nM range and competed with transforming growth factor-beta to bind to the cell surface receptor in vitro.

journal_name

Biochimie

journal_title

Biochimie

authors

Ohuchi SP,Ohtsu T,Nakamura Y

doi

10.1016/j.biochi.2006.02.004

keywords:

subject

Has Abstract

pub_date

2006-07-01 00:00:00

pages

897-904

issue

7

eissn

0300-9084

issn

1638-6183

pii

S0300-9084(06)00020-4

journal_volume

88

pub_type

杂志文章
  • Recombinant Drosophila prophenoloxidase 1 is sequentially cleaved by α-chymotrypsin during in vitro activation.

    abstract::Insect prophenoloxidase (PPO) is an essential innate immunity protein to induce pathogen into melanization. In Bombyx mori, pro-phenoloxidase-activating enzyme (PPAE) can directly cleave and activate PPO. However, PPO in Manduca sexta cannot be cleaved into active phenoloxidase (PO) by serine proteases unless cofactor...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2014.03.007

    authors: Lu A,Li X,Hillyer JF,Beerntsen BT,Söderhäll K,Ling E

    更新日期:2014-07-01 00:00:00

  • Regulation of CIRL-1 proteolysis and trafficking.

    abstract::Calcium-independent receptor of alpha-latrotoxin (CIRL-1) is an adhesion G protein-coupled receptor implicated in the regulation of exocytosis. CIRL-1 biosynthesis involves constitutive proteolytic processing that takes place in the endoplasmic reticulum, requires the receptor's GPS domain, and yields heterologous two...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2010.01.015

    authors: Deyev IE,Petrenko AG

    更新日期:2010-04-01 00:00:00

  • A role for calcium in Bcl-2 action?

    abstract::Changes in the cytosolic Ca(2+) concentration ([Ca(2+)](c)) translate a variety of extracellular signals into widely diverse intracellular effects, ranging from secretion to movement, proliferation and also cell death. As regards the last one, it has long been known that large [Ca(2+)](c) increases lead cells to death...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(02)01373-1

    authors: Pinton P,Ferrari D,Rapizzi E,Di Virgilio F,Pozzan T,Rizzuto R

    更新日期:2002-02-01 00:00:00

  • A novel calmodulin-like protein from the liver fluke, Fasciola hepatica.

    abstract::An 18.2 kDa protein from the liver fluke, Fasciola hepatica has been identified and characterised. The protein shows strongest sequence similarity to egg antigen proteins from Schistosoma mansoni, Schistosoma japonicum and Clonorchis sinensis. The protein is predicted to adopt a calmodulin-like fold; it thus represent...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2012.06.015

    authors: Russell SL,McFerran NV,Moore CM,Tsang Y,Glass P,Hoey EM,Trudgett A,Timson DJ

    更新日期:2012-11-01 00:00:00

  • A new phosphotriesterase from Sulfolobus acidocaldarius and its comparison with the homologue from Sulfolobus solfataricus.

    abstract::The phosphotriesterase PTE, identified in the soil bacterium Pseudomonas diminuta, is thought to have evolved in the last several decades to degrade the pesticide paraoxon with proficiency approaching the limit of substrate diffusion (k(cat)/K(M) of 4 x 10(7)M(-1)s(-1)). It belongs to the amidohydrolase superfamily, b...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2007.01.007

    authors: Porzio E,Merone L,Mandrich L,Rossi M,Manco G

    更新日期:2007-05-01 00:00:00

  • Role of poly(ADP-ribose) polymerase in cell-cycle checkpoint mechanisms following gamma-irradiation.

    abstract::A nuclear poly(ADP-ribose) polymerase (PARP) is activated by gamma-irradiation and consequently synthesizes poly(ADP-ribose) by binding to DNA strand-breaks. This property suggests that PARP is a DNA strand-break-signal generator. Meanwhile, the cell-cycle arrest occurs in G1 and G2 phases following gamma-irradiation....

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/0300-9084(96)88161-2

    authors: Masutani M,Nozaki T,Wakabayashi K,Sugimura T

    更新日期:1995-01-01 00:00:00

  • Potential role and therapeutic interests of myo-inositol in metabolic diseases.

    abstract::Several inositol isomers and in particular myo-inositol (MI) and D-chiro-inositol (DCI), were shown to possess insulin-mimetic properties and to be efficient in lowering post-prandial blood glucose. In addition, abnormalities in inositol metabolism are associated with insulin resistance and with long term microvascula...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2013.05.011

    authors: Croze ML,Soulage CO

    更新日期:2013-10-01 00:00:00

  • The adaptive response in E. coli.

    abstract::The adaptive response appears in E. coli after exposure to low levels of alkylating agents. This system is under the positive control of the ada gene. At least two enzymes are induced during the response: 3-methyladenine DNA glycosylase II and O6-methylguanine DNA methyltransferase. The latter is also the product of t...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(85)80080-8

    authors: Defais M

    更新日期:1985-03-01 00:00:00

  • [Effect of indomethacin on the lactogenic action of prolactin].

    abstract::The action of indomethacin on the lactogenic activity of prolactin has been evaluated usind the technique of rabbit mammary gland organ culture. Indomethacin is totally unable to inhibit prolactin action as estimated by lactose synthetase activity and casein synthesis. These data suggest, as opposed to previous works...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(80)80060-5

    authors: Houdebine LM,Lacroix MC

    更新日期:1980-01-01 00:00:00

  • An empirical energy function for structural assessment of protein transmembrane domains.

    abstract::Knowing the structure of a protein is essential to characterize its function and mechanism at the molecular level. Despite major advances in solving structures experimentally, most membrane protein native conformations remain unknown. This lack of available structures, along with the physical constraints imposed by th...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2015.05.018

    authors: Postic G,Ghouzam Y,Gelly JC

    更新日期:2015-08-01 00:00:00

  • Borrelia burgdorferi infection induces lipid mediator production during Lyme arthritis.

    abstract::Experimental Lyme arthritis provides a mouse model for exploring the development of pathology following infection of C3H mice with Borrelia burgdorferi. Infected mice develop a reliable inflammatory arthritis of the ankle joint with severity that typically peaks around two to three weeks post-infection and then underg...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2017.06.010

    authors: Brown CR,Dennis EA

    更新日期:2017-10-01 00:00:00

  • Cloning of a cDNA for the S-adenosyl-L-homocysteine hydrolase from Dictyostelium discoideum.

    abstract::We screened a cDNA library of the primitive eukaryote Dictyostelium discoideum constructed in the expression vector lambda gt11 with a specific antiserum directed against S-adenosyl-L-homocysteine hydrolase (AdoHcy hydrolase) and isolated cDNA clones coding for fusion proteins with beta-galactosidase. The identity of ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(88)90115-0

    authors: Guitton MC,Part D,Veron M

    更新日期:1988-06-01 00:00:00

  • Exploiting the unique features of Zika and Dengue proteases for inhibitor design.

    abstract::Zika and Dengue viruses have attracted substantial attention from researchers in light of recent outbreaks of Dengue fever and increases in cases of congenital microcephaly in areas with Zika incidence. This review summarizes the current state of knowledge about Zika and Dengue proteases. These enzymes have several in...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2019.05.004

    authors: Majerová T,Novotný P,Krýsová E,Konvalinka J

    更新日期:2019-11-01 00:00:00

  • Cytoplasmic peptidoglycan intermediate levels in Staphylococcus aureus.

    abstract::Intracellular cytoplasmic peptidoglycan (PG) intermediate levels were determined in Staphylococcus aureus during log-phase growth in enriched media. Levels of UDP-linked intermediates were quantitatively determined using ion pairing LC-MS/MS in negative mode, and amine intermediates were quantitatively determined ster...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2015.11.017

    authors: Vemula H,Ayon NJ,Gutheil WG

    更新日期:2016-02-01 00:00:00

  • Highly divergent mitochondrion-related organelles in anaerobic parasitic protozoa.

    abstract::The mitochondria have arisen as a consequence of endosymbiosis of an ancestral α-proteobacterium with a methane-producing archae. The main function of the canonical aerobic mitochondria include ATP generation via oxidative phosphorylation, heme and phospholipid synthesis, calcium homeostasis, programmed cell death, an...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2013.11.018

    authors: Makiuchi T,Nozaki T

    更新日期:2014-05-01 00:00:00

  • Modification of brain glutamate dehydrogenase isoproteins with pyridoxal 5'-phosphate.

    abstract::Two soluble forms of brain glutamate dehydrogenase isoproteins were inactivated by pyridoxal 5'-phosphate. Restoration of catalytic activity can be accomplished by dialysis and addition of an excess of cysteine or lysine. Spectral evidence is presented to indicate that the inactivation proceeds through Schiff base for...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(97)84333-7

    authors: Cho SW,Lee JE

    更新日期:1996-01-01 00:00:00

  • A large-scale comparative analysis of affinity, thermodynamics and functional characteristics of interactions of twelve cytochrome P450 isoforms and their redox partners.

    abstract::The aim of the present work was to establish the thermodynamic and functional differences in the protein-protein interactions between the components of the P450-dependent mitochondrial (mit) and microsomal (mic) monooxygenase systems using 12 different isoforms of cytochromes P450 and two redox partners, NADPH-depende...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2019.04.020

    authors: Yablokov EO,Sushko TA,Ershov PV,Florinskaya AV,Gnedenko OV,Shkel TV,Grabovec IP,Strushkevich NV,Kaluzhskiy LA,Usanov SA,Gilep AA,Ivanov AS

    更新日期:2019-07-01 00:00:00

  • 27-hydroxycholesterol decreases cell proliferation in colon cancer cell lines.

    abstract::Colorectal cancer (CRC) is the third most diagnosed cancer in the western world, affecting 1 out of approximately 22 people in their lifetime. Several epidemiological studies suggest a positive association between high plasma cholesterol levels and colorectal cancer. However, the molecular mechanisms by which choleste...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2018.07.006

    authors: Warns J,Marwarha G,Freking N,Ghribi O

    更新日期:2018-10-01 00:00:00

  • The efficient cell-SELEX strategy, Icell-SELEX, using isogenic cell lines for selection and counter-selection to generate RNA aptamers to cell surface proteins.

    abstract::Aptamers are short single-stranded nucleic acid molecules that are selected in vitro from a large random sequence library based on their high and specific affinity to a target molecule by a process known as SELEX. Cell-SELEX that employs whole living cells overexpressing the defined cell surface proteins (for selectio...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2016.09.018

    authors: Takahashi M,Sakota E,Nakamura Y

    更新日期:2016-12-01 00:00:00

  • Purification and properties of glycogen synthase I from bovine polymorphonuclear leucocytes.

    abstract::Glycogen synthase I was purified from bovine polymorphonuclear leucocytes (PMNs) by a procedure involving concanavalin A-Sepharose affinity chromatography. The purified glycogen-bound glycogen synthase I had a specific activity of 9.83 U/mg protein and the glycogen free enzyme 21 U/mg protein. Molecular ratio of the n...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(85)80201-7

    authors: Rasmussen LH,Pedersen KM,Juhl H

    更新日期:1985-06-01 00:00:00

  • Early effects of triidothyronine on the complexity of rat heart messenger RNAs.

    abstract::Triiodothyronine (T3), injected daily into rats, induces heart hypertrophy. In a recent work we have shown that a single T3 injection stimulates RNA synthesis and modifies the translational products of myocardial mRNAs in reticulocyte lysates, quantitatively and qualitatively. In this work we show that T3 induces smal...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(84)90113-5

    authors: Raymondjean M,Leibovitch SA,Leibovitch MP,Harel J,Kruh J

    更新日期:1984-09-01 00:00:00

  • Pyruvate reverses metabolic effects produced by hypoxia in glioma and hepatoma cell cultures.

    abstract::The intervention of pyruvate in glucose metabolism was investigated during hypoxic stress in tumour cell cultures having respiratory capacities under normoxic conditions. Results obtained with nuclear magnetic resonance (NMR) spectroscopy showed that, under normoxic conditions, rat glioma C6 and human hepatoma Hep G2 ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(02)00008-1

    authors: Perrin A,Roudier E,Duborjal H,Bachelet C,Riva-Lavieille C,Leverve X,Massarelli R

    更新日期:2002-10-01 00:00:00

  • Artificial P450/reductase fusion enzymes: what can we learn from their structures?

    abstract::Cytochromes P450 constitute a superfamily of hemoproteins which have evolved from a common ancestor. Recent advances in molecular biology have offered a powerful approach to the research on the multiplicity of P450. Now, every mammalian P450 species can be characterized by heterologous expression of its cDNA. In addit...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/0300-9084(96)88175-2

    authors: Yabusaki Y

    更新日期:1995-01-01 00:00:00

  • Structure-function relationships in mammalian histidine-proline-rich glycoprotein.

    abstract::Histidine-proline-rich glycoprotein (HPRG), or histidine-rich glycoprotein (HRG), is a serum protein that is synthesized in the liver and is actively internalised by different cells, including skeletal muscle. The multidomain arrangement of HPRG comprises two modules at the N-terminus that are homologous to cystatin b...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/j.biochi.2015.09.024

    authors: Ronca F,Raggi A

    更新日期:2015-11-01 00:00:00

  • Properties of an abundant RNA-binding protein in yeast mitochondria.

    abstract::We have previously identified a protein with Mr approximately 40,000 (p40) that binds with high specificity and affinity to the 5'-untranslated leaders of mitochondrial mRNAs in yeast. Here we show that this protein is abundant, comprising about 0.4% of total mitochondrial protein. p40 is present in a cytoplasmic (rho...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(91)90182-z

    authors: Dekker PJ,Papadopoulou B,Grivell LA

    更新日期:1991-12-01 00:00:00

  • The yeast ATP synthase subunit 4: structure and function.

    abstract::The structure of ATP synthase subunit 4 was determined by using the oligonucleotide probe procedure. This subunit is the fourth polypeptide of the complex when classifying subunits in order of decreasing molecular mass. Its relative molecular mass is 25 kDa. The ATP4 gene was isolated and sequenced. The nucleotide seq...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/0300-9084(89)90073-4

    authors: Velours J,Arselin G,Paul MF,Galante M,Durrens P,Aigle M,Guerin B

    更新日期:1989-08-01 00:00:00

  • How botulinum and tetanus neurotoxins block neurotransmitter release.

    abstract::Botulinum neurotoxins (BoNT, serotypes A-G) and tetanus neurotoxin (TeNT) are bacterial proteins that comprise a light chain (M(r) approximately 50) disulfide linked to a heavy chain (M(r) approximately 100). By inhibiting neurotransmitter release at distinct synapses, these toxins cause two severe neuroparalytic dise...

    journal_title:Biochimie

    pub_type: 杂志文章,评审

    doi:10.1016/s0300-9084(00)00216-9

    authors: Humeau Y,Doussau F,Grant NJ,Poulain B

    更新日期:2000-05-01 00:00:00

  • The glucomannan system from Aloe vahombe (liliaceae). III. Comparative studies on the glucomannan components isolated from the leaves.

    abstract::The polysaccharide mixture obtained by hot water extraction of Aloe vahombe leaves is composed of at least four different paritally acetylated glucomannans which differ in molecular weight, glucose to mannose ratios and acetyl contents. Furthermore, one fraction contains a small but significant amount of protein which...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(86)80187-0

    authors: Vilkas E,Radjabi-Nassab F

    更新日期:1986-09-01 00:00:00

  • Iron increases liver injury through oxidative/nitrative stress in diabetic rats: Involvement of nitrotyrosination of glucokinase.

    abstract::Excessive tissue iron levels are associated with the increase of oxidative/nitrative stress which contributes to tissue damage that may elevate the risk of diabetes. Therefore, we investigated the effects of iron on diabetes-associated liver injury and whether iron-related tyrosine nitration participated in this proce...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/j.biochi.2012.07.019

    authors: Li X,Li H,Lu N,Feng Y,Huang Y,Gao Z

    更新日期:2012-12-01 00:00:00

  • [Study, by an enzymatic method, of the isomers of L-proline (3H-4) and of the effects of preservation].

    abstract::By use of procollagen proline hydroxylas which catalyses the substitution of the hydrogen in the trans position on carbon 4 with an hydroxyl on L-proline residues of procollagen, we have shown that the L-[3H-4] proline product of C.E.N. Saclay contained 29 per cent of the trans and 71 per cent of the cis form. It was ...

    journal_title:Biochimie

    pub_type: 杂志文章

    doi:10.1016/s0300-9084(76)80433-6

    authors: Farjanel J,Pichat L,Audinot M,Perier C,Frey J

    更新日期:1976-01-01 00:00:00