Tra proteins characteristic of F-like type IV secretion systems constitute an interaction group by yeast two-hybrid analysis.

Abstract:

:Using yeast two-hybrid screens, we have defined an interaction group of six Tra proteins encoded by the F plasmid and required by F(+) cells to elaborate F pili. The six proteins are TraH, TraF, TraW, TraU, TrbI, and TrbB. Except for TrbI, these proteins were all identified as hallmarks of F-like type IV secretion systems (TFSSs), with no homologues among TFSS genes of P-type or I-type systems (T. Lawley, W. Klimke, M. Gubbins, and L. Frost, FEMS Microbiol. Lett. 224:1-15, 2003). Also with the exception of TrbI, which is an inner membrane protein, the remaining proteins are or are predicted to be periplasmic. TrbI consists of one membrane-spanning segment near its N terminus and an 88-residue, hydrophilic domain that extends into the periplasm. Hence, the proteins of this group probably form a periplasmic cluster in Escherichia coli. The interaction network identifies TraH as the most highly connected node, with two-hybrid links to TrbI, TraU, and TraF. As measured by transcriptional activation of lacZ, the TrbI-TraH interaction in Saccharomyces cerevisiae requires the TraH amino acid segment from residues 193 to 225. The TraU and TraF interactions are localized to C-terminal segments of TraH (amino acids 315 to 458 for TraF and amino acids 341 to 458 for TraU). The TrbI-TraH interaction with full-length (less the signal peptide) TraH is weak but increases 40-fold with N-terminal TraH deletions; the first 50 amino acids appear to be critical for inhibiting TrbI binding in yeast. Previous studies by others have shown that, with the exception of trbB mutations, which do not affect the elaboration or function of F pili under laboratory conditions, a mutation in any of the other genes in this interaction group alters the number or length distribution of F pili. We propose a model whereby one function of the TraH interaction group is to control F-pilus extension and retraction.

journal_name

J Bacteriol

journal_title

Journal of bacteriology

authors

Harris RL,Silverman PM

doi

10.1128/JB.186.16.5480-5485.2004

keywords:

subject

Has Abstract

pub_date

2004-08-01 00:00:00

pages

5480-5

issue

16

eissn

0021-9193

issn

1098-5530

pii

186/16/5480

journal_volume

186

pub_type

杂志文章
  • Group Q streptococci. II. Nutritional characteristics and growth relationship to thymine, folate, and folinate.

    abstract::The vitamin requirements of the group Q streptococci (Streptococcus avium) and the established enterococcal species (S. faecalis and S. faecium) paralleled one another, although S. avium did not characteristically require riboflavine or pyridoxal. S. avium was further differentiated in that it required thymine for gro...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.94.2.297-299.1967

    authors: Nowlan SS,Deibel RH

    更新日期:1967-08-01 00:00:00

  • Characterization of iucA and iucC genes of the aerobactin system of plasmid ColV-K30 in Escherichia coli.

    abstract::A cloned 8.3-kilobase-pair DNA fragment carrying all the genes (iucABCD iutA) of the aerobactin iron transport system of plasmid pColV-K30 was subjected to in vitro mutagenesis to afford mutant genes iucA, iucC, and iucA iucC. Complementation analyses and identification of aerobactin precursors accumulated by Escheric...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.167.1.350-355.1986

    authors: de Lorenzo V,Neilands JB

    更新日期:1986-07-01 00:00:00

  • Involvement of a cytochrome P450 monooxygenase in thaxtomin A biosynthesis by Streptomyces acidiscabies.

    abstract::The biosynthesis of the thaxtomin cyclic dipeptide phytotoxins proceeds nonribosomally via the thiotemplate mechanism. Acyladenylation, thioesterification, N-methylation, and cyclization of two amino acid substrates are catalyzed by the txtAB-encoded thaxtomin synthetase. Nucleotide sequence analysis of the region 3' ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.184.7.2019-2029.2002

    authors: Healy FG,Krasnoff SB,Wach M,Gibson DM,Loria R

    更新日期:2002-04-01 00:00:00

  • Antisense RNA regulation by stable complex formation in the Enterococcus faecalis plasmid pAD1 par addiction system.

    abstract::The par stability determinant, encoded by the Enterococcus faecalis plasmid pAD1, is the only antisense RNA regulated postsegregational killing system identified in gram-positive bacteria. Because of the unique organization of the par locus, the par antisense RNA, RNA II, binds to its target, RNA I, at relatively smal...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.186.19.6400-6408.2004

    authors: Weaver KE,Ehli EA,Nelson JS,Patel S

    更新日期:2004-10-01 00:00:00

  • Conjugal transfer of antibiotic resistance factors in Bacteroides fragilis: the btgA and btgB genes of plasmid pBFTM10 are required for its transfer from Bacteroides fragilis and for its mobilization by IncP beta plasmid R751 in Escherichia coli.

    abstract::Transferable plasmids play an important role in the dissemination of clindamycin-erythromycin resistance in Bacteroides fragilis. We previously described the isolation and properties of pBFTM10, a 14.9-kb ClnR transfer factor from B. fragilis TMP10. We also reported the isolation of a transfer-deficient deletion deriv...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.173.23.7471-7480.1991

    authors: Hecht DW,Jagielo TJ,Malamy MH

    更新日期:1991-12-01 00:00:00

  • Genetic screen yields mutations in genes encoding all known components of the Escherichia coli signal recognition particle pathway.

    abstract::We describe the further utilization of a genetic screen that identifies mutations defective in the assembly of proteins into the Escherichia coli cytoplasmic membrane. The screen yielded mutations in each of the known genes encoding components of the E. coli signal recognition particle pathway: ffh, ffs, and ftsY, whi...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.184.1.111-118.2002

    authors: Tian H,Beckwith J

    更新日期:2002-01-01 00:00:00

  • Cadmium and manganese transport in Staphylococcus aureus membrane vesicles.

    abstract::The presence of plasmid gene cadB did not affect Cd2+ accumulation, whereas plasmid gene cadA reduced Cd2+ accumulation by whole cells but not by membrane vesicles. Membrane vesicle studies indicated that Cd2+ uptake occurred via the Mn2+ transport system which was energized by the membrane electrical potential. Mn2+ ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.150.2.973-976.1982

    authors: Perry RD,Silver S

    更新日期:1982-05-01 00:00:00

  • Aerobic purification of hydrogenase from Rhizobium japonicum by affinity chromatography.

    abstract::We purified active hydrogenase from free-living Rhizobium japonicum by affinity chromatography. The uptake hydrogenase of R. japonicum has been treated previously as an oxygen-sensitive protein. In this purification, however, reducing agents were not added nor was there any attempt to exclude oxygen. In fact, the addi...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.166.3.795-800.1986

    authors: Stults LW,Moshiri F,Maier RJ

    更新日期:1986-06-01 00:00:00

  • Synthesis of triacylglycerols by the acyl-coenzyme A:diacyl-glycerol acyltransferase Dga1p in lipid particles of the yeast Saccharomyces cerevisiae.

    abstract::The terminal step of triacylglycerol (TAG) formation in the yeast Saccharomyces cerevisiae is catalyzed by the enzyme acyl-CoA:diacylglycerol acyltransferase (DAGAT). In this study we demonstrate that the gene product of YOR245c, Dga1p, catalyzes a major yeast DAGAT activity which is localized to lipid particles. Enzy...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.184.2.519-524.2002

    authors: Sorger D,Daum G

    更新日期:2002-01-01 00:00:00

  • The YjbH protein of Bacillus subtilis enhances ClpXP-catalyzed proteolysis of Spx.

    abstract::The global transcriptional regulator Spx of Bacillus subtilis is controlled at several levels of the gene expression process. It is maintained at low concentrations during unperturbed growth by the ATP-dependent protease ClpXP. Under disulfide stress, Spx concentration increases due in part to a reduction in ClpXP-cat...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.01289-08

    authors: Garg SK,Kommineni S,Henslee L,Zhang Y,Zuber P

    更新日期:2009-02-01 00:00:00

  • Genome-wide analyses in bacteria show small-RNA enrichment for long and conserved intergenic regions.

    abstract::Interest in finding small RNAs (sRNAs) in bacteria has significantly increased in recent years due to their regulatory functions. Development of high-throughput methods and more sophisticated computational algorithms has allowed rapid identification of sRNA candidates in different species. However, given their various...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.02359-14

    authors: Tsai CH,Liao R,Chou B,Palumbo M,Contreras LM

    更新日期:2015-01-01 00:00:00

  • Identification and characterization of noncoding small RNAs in Streptococcus pneumoniae serotype 2 strain D39.

    abstract::We report a search for small RNAs (sRNAs) in the low-GC, gram-positive human pathogen Streptococcus pneumoniae. Based on bioinformatic analyses by Livny et al. (J. Livny, A. Brencic, S. Lory, and M. K. Waldor, Nucleic Acids Res. 34:3484-3493, 2006), we tested 40 candidates by Northern blotting and confirmed the expres...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.01204-09

    authors: Tsui HC,Mukherjee D,Ray VA,Sham LT,Feig AL,Winkler ME

    更新日期:2010-01-01 00:00:00

  • Nucleotide sequence and expression of cheF, an essential gene for chemotaxis in Bacillus subtilis.

    abstract::The cheF gene, which is involved in chemotaxis in Bacillus subtilis, has been cloned, expressed, and sequenced. This gene is contained in a 0.7-kilobase PstI DNA fragment that was isolated from a lambda Charon 4A B. subtilis chromosomal DNA library. This fragment was subcloned into the expression vector pSI-1 and show...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.171.3.1631-1637.1989

    authors: Ying CW,Ordal GW

    更新日期:1989-03-01 00:00:00

  • Structure and function of cold shock proteins in archaea.

    abstract::Archaea are abundant and drive critical microbial processes in the Earth's cold biosphere. Despite this, not enough is known about the molecular mechanisms of cold adaptation and no biochemical studies have been performed on stenopsychrophilic archaea (e.g., Methanogenium frigidum). This study examined the structural ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00395-07

    authors: Giaquinto L,Curmi PM,Siddiqui KS,Poljak A,DeLong E,DasSarma S,Cavicchioli R

    更新日期:2007-08-01 00:00:00

  • Germination properties as marker events characterizing later stages of Bacillus subtilis spore formation.

    abstract::At various stages during spore formation sporangia were shocked by cold treatment or with toluene, and the germination requirements of the prespores were examined. Up to 5 h after induction of sporulation (t5) germination was spontaneous; i.e., it occurred without any added germinants. After t5, during stages V and VI...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.141.2.786-792.1980

    authors: Dion P,Mandelstam J

    更新日期:1980-02-01 00:00:00

  • The Bradyrhizobium japonicum rpoH1 gene encoding a sigma 32-like protein is part of a unique heat shock gene cluster together with groESL1 and three small heat shock genes.

    abstract::The heat shock response of Bradyrhizobium japonicum is controlled by a complex network involving two known regulatory systems. While some heat shock genes are controlled by a highly conserved inverted-repeat structure (CIRCE), others depend on a sigma 32-type heat shock sigma factor. Using Western blot (immunoblot) an...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.178.18.5337-5346.1996

    authors: Narberhaus F,Weiglhofer W,Fischer HM,Hennecke H

    更新日期:1996-09-01 00:00:00

  • The Escherichia coli K-12 F plasmid gene traX is required for acetylation of F pilin.

    abstract::The Escherichia coli F plasmid gene required for amino-terminal acetylation of F-pilin subunits was identified. Using Western blots (immunoblots), we assayed the reaction of monoclonal antibodies with F-pilin polypeptides in inner membrane preparations from various F mutant strains. It was known that JEL92 recognizes ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.175.5.1375-1383.1993

    authors: Moore D,Hamilton CM,Maneewannakul K,Mintz Y,Frost LS,Ippen-Ihler K

    更新日期:1993-03-01 00:00:00

  • Expression of symbiotic genes of Rhizobium japonicum USDA 191 in other rhizobia.

    abstract::A 200-megadalton plasmid was mobilized from Rhizobium japonicum USDA 191 to other Rhizobium strains either that cannot nodulate soybeans or that form Fix- nodules on certain cultivars. The symbiotic properties of the transconjugants indicate that both soybean specificity for nodulation and cultivar specificity for nit...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.163.1.385-388.1985

    authors: Appelbaum ER,McLoughlin TJ,O'Connell M,Chartrain N

    更新日期:1985-07-01 00:00:00

  • Ultrastructure of Azotobacter vinelandii.

    abstract::Vegetative cells and cysts of Azotobacter vinelandii 12837 were prepared for electron microscopy by several methods assumed to preserve structural details destroyed by techniques previously reported in the literature. Examination of large numbers of cells and cysts by these methods revealed four structural details not...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.104.2.933-939.1970

    authors: Vela GR,Cagle GD,Holmgren PR

    更新日期:1970-11-01 00:00:00

  • Primary characterization of the protein products of the Escherichia coli ompB locus: structure and regulation of synthesis of the OmpR and EnvZ proteins.

    abstract::The ompB operon of Escherichia coli contains the structural genes for two proteins, OmpR and EnvZ, which control the osmoregulated biosynthesis of the porin proteins OmpF and OmpC. By inserting XbaI octamer linkers into the cloned ompB locus, four distinct frameshift mutants were isolated and subsequently characterize...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.164.2.578-584.1985

    authors: Comeau DE,Ikenaka K,Tsung KL,Inouye M

    更新日期:1985-11-01 00:00:00

  • Sialidase-like enzymes produced by group A, B, C, G, and L streptococci and by Streptococcus sanguis.

    abstract::A group of enzymes were prepared from the culture fluids of streptococci belonging to groups A, B, C, G, and L, and from a strain of Streptococcus sanguis. These streptococcal enzymes (designated St-sialidases) released a substance shown to belong to the sialic acid group from the specific substrate BSM-St, a sialomuc...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.97.3.1328-1333.1969

    authors: Hayano S,Tanaka A

    更新日期:1969-03-01 00:00:00

  • Massetolide A biosynthesis in Pseudomonas fluorescens.

    abstract::Massetolide A is a cyclic lipopeptide (CLP) antibiotic produced by various Pseudomonas strains from diverse environments. Cloning, sequencing, site-directed mutagenesis, and complementation showed that massetolide A biosynthesis in P. fluorescens SS101 is governed by three nonribosomal peptide synthetase (NRPS) genes,...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.01563-07

    authors: de Bruijn I,de Kock MJ,de Waard P,van Beek TA,Raaijmakers JM

    更新日期:2008-04-01 00:00:00

  • Ultrastructural studies of sporulation in Streptomyces.

    abstract::This is the first study of sporogenesis in Streptomyces carried out on a relatively high number of species (seven) which allows us, using also previously published results, to establish a general picture of this process. In the sporogenesis of Streptomyces two basic stages can be considered: the sporulation septum syn...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.127.3.1443-1454.1976

    authors: Hardisson C,Manzanal MB

    更新日期:1976-09-01 00:00:00

  • Occurrence of alpha-tocopherolquinone and alpha-tocopherolquinol in microorganisms.

    abstract::Both alpha-tocopherolquinol and alpha-tocopherolquinone were found in 56 of 93 strains of microorganisms examined. Organisms that contained these compounds included the single example of a eucaryotic alga, a Euglena, and a cyanobacterium (blue-green alga), 22 of 32 genera of bacteria, and 9 genera of yeasts. In the ba...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.151.3.1397-1402.1982

    authors: Hughes PE,Tove SB

    更新日期:1982-09-01 00:00:00

  • Multiple N-acyl-L-homoserine lactone autoinducers of luminescence in the marine symbiotic bacterium Vibrio fischeri.

    abstract::In Vibrio fischeri, the synthesis of N-3-oxohexanoyl-L-homoserine lactone, the autoinducer for population density-responsive induction of the luminescence operon (the lux operon, luxICDABEG), is dependent on the autoinducer synthase gene luxI. Gene replacement mutants of V. fischeri defective in luxI, which had been e...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.176.24.7558-7565.1994

    authors: Kuo A,Blough NV,Dunlap PV

    更新日期:1994-12-01 00:00:00

  • Draft genome sequence of the volcano-inhabiting thermoacidophilic methanotroph Methylacidiphilum fumariolicum strain SolV.

    abstract::The draft genome of Methylacidiphilum fumariolicum SolV, a thermoacidophilic methanotroph of the phylum Verrucomicrobia, is presented. Annotation revealed pathways for one-carbon, nitrogen, and hydrogen catabolism and respiration together with central metabolic pathways. The genome encodes three orthologues of particu...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.00501-12

    authors: Khadem AF,Wieczorek AS,Pol A,Vuilleumier S,Harhangi HR,Dunfield PF,Kalyuzhnaya MG,Murrell JC,Francoijs KJ,Stunnenberg HG,Stein LY,DiSpirito AA,Semrau JD,Lajus A,Médigue C,Klotz MG,Jetten MS,Op den Camp HJ

    更新日期:2012-07-01 00:00:00

  • Change in direction of flagellar rotation in Escherichia coli mediated by acetate kinase.

    abstract::Strains of Escherichia coli lacking all cytoplasmic chemotaxis proteins except CheY swim smoothly under most conditions. However, they tumble when exposed to acetate. Acetate coenzyme A synthetase (EC 6.2.1.1) was thought to be essential for this response. New evidence suggests that the tumbling is mediated instead by...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.175.10.3236-3239.1993

    authors: Dailey FE,Berg HC

    更新日期:1993-05-01 00:00:00

  • Developmental rearrangement of cyanobacterial nif genes: nucleotide sequence, open reading frames, and cytochrome P-450 homology of the Anabaena sp. strain PCC 7120 nifD element.

    abstract::An 11-kbp DNA element of unknown function interrupts the nifD gene in vegetative cells of Anabaena sp. strain PCC 7120. In developing heterocysts the nifD element excises from the chromosome via site-specific recombination between short repeat sequences that flank the element. The nucleotide sequence of the nifH-proxi...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/jb.172.12.6981-6990.1990

    authors: Lammers PJ,McLaughlin S,Papin S,Trujillo-Provencio C,Ryncarz AJ 2nd

    更新日期:1990-12-01 00:00:00

  • Deoxyribonucleate binding and transformation in Rhizobium jpaonicum.

    abstract::Rhizobium japonicum, capable of binding high-molecular-weight donor (32)P-labeled deoxyribonucleic acid (DNA) during late log phase in a competence medium, was transformed for streptomycin resistance with a frequency of transformation ranging between 0.02 and 0.08%. Eight to 10% of the homologous native (32)P-labeled ...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.111.2.356-360.1972

    authors: Raina JL,Modi VV

    更新日期:1972-08-01 00:00:00

  • Changes in ribosomal activity of Escherichia coli cells during prolonged culture in sea salts medium.

    abstract::The activity of ribosomes from a clinical isolate of Escherichia coli, exposed to starvation for 7 days in sea salts medium, was investigated by measuring the kinetic parameters of ribosomal peptidyltransferase, by using the puromycin reaction as a model reaction. No alterations in the extent of peptide bond formation...

    journal_title:Journal of bacteriology

    pub_type: 杂志文章

    doi:10.1128/JB.180.12.3114-3119.1998

    authors: Kalpaxis DL,Karahalios P,Papapetropoulou M

    更新日期:1998-06-01 00:00:00