Pyrophosphate-producing protein dephosphorylation by HPr kinase/phosphorylase: a relic of early life?

abstract：:The detailed molecular dynamics of an actual bond-breaking event in a fluctuating enzyme substrate complex is simulated. The method developed allows one to explore what type of fluctuations are involved in enzymatic reactions and to evaluate entropic contributions to enzyme catalysis. The fluctuations of the enzyme el...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Warshel A

更新日期：1984-01-01 00:00:00

abstract：:Members of the SLC4 bicarbonate transporter family are involved in solute transport and pH homeostasis. Here we report that disrupting the Slc4a10 gene, which encodes the Na(+)-coupled Cl(-)-HCO(3)(-) exchanger Slc4a10 (NCBE), drastically reduces brain ventricle volume and protects against fatal epileptic seizures in ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Jacobs S,Ruusuvuori E,Sipilä ST,Haapanen A,Damkier HH,Kurth I,Hentschke M,Schweizer M,Rudhard Y,Laatikainen LM,Tyynelä J,Praetorius J,Voipio J,Hübner CA

更新日期：2008-01-08 00:00:00

abstract：:A 37-kDa glycoprotein has been described recently, whose synthesis is dramatically increased after injury of the rat sciatic and optic nerves. Cells in the nerve sheath, distal to the site of injury, produce and secrete large amounts of this protein, so that by 3 weeks after injury, it represents 2-5% of the total sol...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ignatius MJ,Gebicke-Härter PJ,Skene JH,Schilling JW,Weisgraber KH,Mahley RW,Shooter EM

更新日期：1986-02-01 00:00:00

abstract：:Proteins need to be tightly regulated as they control biological processes in most normal cellular functions. The precise mechanisms of regulation are rarely completely understood but can involve binding of endogenous ligands and/or partner proteins at specific locations on a protein that can modulate function. Often,...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ludlow RF,Verdonk ML,Saini HK,Tickle IJ,Jhoti H

更新日期：2015-12-29 00:00:00

abstract：:We have isolated and analyzed a cDNA from the central nervous system of the mollusc Lymnaea stagnalis encoding a putative receptor, which might be a natural hybrid between two different classes of receptor proteins. Preceded by a signal peptide, two types of repeated sequences are present in the N-terminal part of the...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Tensen CP,Van Kesteren ER,Planta RJ,Cox KJ,Burke JF,van Heerikhuizen H,Vreugdenhil E

更新日期：1994-05-24 00:00:00

abstract：:Despite the enormous theoretical attention given to the evolutionary consequences of sexual reproduction, the validity of the key assumptions on which the theory depends rarely has been evaluated. It is often argued that a reduced ability to purge deleterious mutations condemns asexual lineages to an early extinction....

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Omilian AR,Cristescu ME,Dudycha JL,Lynch M

更新日期：2006-12-05 00:00:00

abstract：:Whole-chromosome copy number alterations, also known as aneuploidy, are associated with adverse consequences in most cells and organisms. However, high frequencies of aneuploidy have been reported to occur naturally in the mammalian liver and brain, fueling speculation that aneuploidy provides a selective advantage in...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Knouse KA,Wu J,Whittaker CA,Amon A

更新日期：2014-09-16 00:00:00

abstract：:Lipoprotein oxidation is thought to play a pivotal role in atherogenesis, yet the underlying reaction mechanisms remain poorly understood. We have explored the possibility that high density lipoprotein (HDL) might be oxidized by peroxidase-generated tyrosyl radical. Exposure of HDL to L-tyrosine, H2O2, and horseradish...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Francis GA,Mendez AJ,Bierman EL,Heinecke JW

更新日期：1993-07-15 00:00:00

abstract：:The L-A double-stranded RNA virus of Saccharomyces cerevisiae makes a gag-pol fusion protein by a -1 ribosomal frameshift. The pol amino acid sequence includes consensus patterns typical of the RNA-dependent RNA polymerases (EC 2.7.7.48) of (+) strand and double-stranded RNA viruses of animals and plants. We have carr...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ribas JC,Wickner RB

更新日期：1992-03-15 00:00:00

abstract：:NAD(P)H:quinone oxidoreductase (NQOR; EC 1.6.99.2) is a homodimeric enzyme which catalyzes the reduction of quinones, azo dyes, and other electron acceptors by NADPH or NADH. To pursue subunit functional studies, we expressed a wild-type/mutant heterodimer of NQOR in Escherichia coli. The wild-type subunit of the hete...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Cui K,Lu AY,Yang CS

更新日期：1995-02-14 00:00:00

abstract：:Genomic regions of nearly every species diverged into different haplotypes, mostly based on point mutations, small deletions, and insertions that do not affect the collinearity of genes within a species. However, the same genomic interval containing the z1C gene cluster of two inbred lines of Zea mays significantly lo...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Song R,Messing J

更新日期：2003-07-22 00:00:00

abstract：:Ligands of the endothelial-enriched tunica interna endothelial cell kinase 2 (Tie2) are markedly imbalanced in severe infections associated with vascular leakage, yet regulation of the receptor itself has been understudied in this context. Here, we show that TIE2 gene expression may constitute a novel vascular barrier...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ghosh CC,David S,Zhang R,Berghelli A,Milam K,Higgins SJ,Hunter J,Mukherjee A,Wei Y,Tran M,Suber F,Kobzik L,Kain KC,Lu S,Santel A,Yano K,Guha P,Dumont DJ,Christiani DC,Parikh SM

更新日期：2016-03-01 00:00:00

abstract：:Nitric oxide-releasing compounds were shown to activate an ADP-ribosyltransferase activity in the cytosol of Dictyostelium discoideum. The enzyme ADP-ribosylated a cytosolic protein of approximately 41 kDa, p41. Neither cGMP nor GTP and its analogues affected this ADP-ribosylation. p41 differs from other substrates AD...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Tao Y,Howlett A,Klein C

更新日期：1992-07-01 00:00:00

abstract：:Soil systems are being increasingly exposed to the interactive effects of biological invasions and climate change, with rising temperatures expected to benefit alien over indigenous species. We assessed this expectation for an important soil-dwelling group, the springtails, by determining whether alien species show br...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Janion-Scheepers C,Phillips L,Sgrò CM,Duffy GA,Hallas R,Chown SL

更新日期：2018-01-02 00:00:00

abstract：:The VX2 carcinoma-bearing rabbit is an animal model for tumor-induced hypercalcemia, thought to be due to increased bone destruction effected by prostaglandin E2. The present experiments suggest that the pathophysiology of the hypercalcemia differs from that previously proposed. Tumor was transplanted intramuscularly ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Doppelt SH,Slovik DM,Neer RM,Nolan J,Zusman RM,Potts JT Jr

更新日期：1982-01-01 00:00:00

abstract：:Protein misfolding is the molecular basis for several human diseases. How the primary amino acid sequence triggers misfolding and determines the benign or toxic character of the misfolded protein remains largely obscure. Among proteins that misfold, polyglutamine (polyQ) expansion proteins provide an interesting case:...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Duennwald ML,Jagadish S,Muchowski PJ,Lindquist S

更新日期：2006-07-18 00:00:00

abstract：:The DNA damage response is an essential process for the survival of living cells. In a subset of stress-responsive genes in humans, Elongin controls transcription in response to multiple stimuli, such as DNA damage, oxidative stress, and heat shock. Yeast Elongin (Ela1-Elc1), along with Def1, is known to facilitate ub...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Damodaren N,Van Eeuwen T,Zamel J,Lin-Shiao E,Kalisman N,Murakami K

更新日期：2017-12-12 00:00:00

abstract：:Determining the principal energy-transfer pathways responsible for allosteric communication in biomolecules remains challenging, partially due to the intrinsic complexity of the systems and the lack of effective characterization methods. In this work, we introduce the eigenvector centrality metric based on mutual info...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Negre CFA,Morzan UN,Hendrickson HP,Pal R,Lisi GP,Loria JP,Rivalta I,Ho J,Batista VS

更新日期：2018-12-26 00:00:00

abstract：:The day we understand the time evolution of subcellular events at a level of detail comparable to physical systems governed by Newton's laws of motion seems far away. Even so, quantitative approaches to cellular dynamics add to our understanding of cell biology. With data-guided frameworks we can develop better predic...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Ronquist S,Patterson G,Muir LA,Lindsly S,Chen H,Brown M,Wicha MS,Bloch A,Brockett R,Rajapakse I

更新日期：2017-11-07 00:00:00

abstract：:The c-ras family is a set of c-onc genes that are highly conserved in vertebrates. The genes in this family are homologous to the transforming genes of Harvey and Kirsten murine sarcoma viruses (v-Ha-ras and v-Ki-ras, respectively). Using an in situ molecular hybridization method, we detected three sites on the human ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Jhanwar SC,Neel BG,Hayward WS,Chaganti RS

更新日期：1983-08-01 00:00:00

abstract：:Extracellular growth and differentiation factors induce changes in gene expression in the nucleus by initiating a series of protein associations that alter the subcellular localization of intracellular signaling proteins. Initial events involve receptor homo- or heterodimerization and subsequent recruitment of cytosol...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Belshaw PJ,Ho SN,Crabtree GR,Schreiber SL

更新日期：1996-05-14 00:00:00

abstract：:Two mutations are described that alter the pattern of inheritance of chloroplast genes in Chlamydomonas. The mutant gene mat-1 linked to the mating type allele mt(-) greatly increases the frequency of exceptional zygotes, i.e., zygotes that transmit chloroplast genes from the mt(-) (male) parent. In some crosses, 80-9...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Sager R,Ramanis Z

更新日期：1974-12-01 00:00:00

abstract：:During endoplasmic reticulum-associated degradation, the multifunctional AAA ATPase p97 is part of a protein degradation complex. p97 associates via its N-terminal domain with various cofactors to recruit ubiquitinated substrates. It also interacts with alternative substrate-processing cofactors, such as Ufd2, Ufd3, a...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Zhao G,Zhou X,Wang L,Li G,Schindelin H,Lennarz WJ

更新日期：2007-05-22 00:00:00

abstract：:Efforts are underway to construct several recoded genomes anticipated to exhibit multivirus resistance, enhanced nonstandard amino acid (nsAA) incorporation, and capability for synthetic biocontainment. Although our laboratory pioneered the first genomically recoded organism (Escherichia coli strain C321.∆A), its fitn...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Wannier TM,Kunjapur AM,Rice DP,McDonald MJ,Desai MM,Church GM

更新日期：2018-03-20 00:00:00

abstract：:Data are presented that demonstrate that a dose of 10 R of x-rays to mature oocytes in Drosophila causes a significant increase, more than double the spontaneous frequency, of inherited translocations. The dose-frequency relationship appears to fit best a linear response between 10 and 50 R. From 50 to 500 R, the freq...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Abrahamson S,Gullifor P,Sabol E,Voigtlander J

更新日期：1971-06-01 00:00:00

abstract：:We obtain a general connection between a large quantum advantage in communication complexity and Bell nonlocality. We show that given any protocol offering a sufficiently large quantum advantage in communication complexity, there exists a way of obtaining measurement statistics that violate some Bell inequality. Our m...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Buhrman H,Czekaj Ł,Grudka A,Horodecki M,Horodecki P,Markiewicz M,Speelman F,Strelchuk S

更新日期：2016-03-22 00:00:00

abstract：:We assess the significance of high-frequency variability of environmental parameters (sunlight, precipitation, temperature) for the structure and function of terrestrial ecosystems under current and future climate. We examine the influence of hourly, daily, and monthly variance using the Ecosystem Demography model ver...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Medvigy D,Wofsy SC,Munger JW,Moorcroft PR

更新日期：2010-05-04 00:00:00

abstract：:Many neurodegenerative diseases are characterized by the accumulation of amyloid fibers in the brain, which can occur when a protein misfolds into an extended beta-sheet conformation. The nucleation of these beta-sheet aggregates is of particular interest, not only because it is the rate-determining step toward fiber ...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Petty SA,Decatur SM

更新日期：2005-10-04 00:00:00

abstract：:A unique neuronal system was detected in the rat central nervous system by immunohistochemistry and radioimmunoassay with antibodies to salmon melanin-concentrating hormone (MCH). MCH-like immunoreactive (MCH-LI) cell bodies were confined to the hypothalamus. MCH-LI fibers were found throughout the brain but were most...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Zamir N,Skofitsch G,Bannon MJ,Jacobowitz DM

更新日期：1986-03-01 00:00:00

abstract：:The formation of amyloid fibrils is a common biochemical characteristic that occurs in Alzheimer's disease and several other amyloidoses. The unifying structural feature of amyloid fibrils is their specific type of beta-sheet conformation that differentiates these fibrils from the products of normal protein folding re...

journal_title：Proceedings of the National Academy of Sciences of the United States of America

authors： Habicht G,Haupt C,Friedrich RP,Hortschansky P,Sachse C,Meinhardt J,Wieligmann K,Gellermann GP,Brodhun M,Götz J,Halbhuber KJ,Röcken C,Horn U,Fändrich M

更新日期：2007-12-04 00:00:00