Genotyping of clinical Serratia marcescens isolates: a comparison of PCR-based methods.

Abstract:

:The polymerase chain reaction (PCR)-based procedures of randomly amplified polymorphic DNA (RAPD) and repetitive element (RE)-based PCR were used to amplify total DNA prepared from each of 62 clinical Serratia marcescens isolates. Three different random primers, designated 1060, 1254 and 1283, were used individually in RAPD-PCR. Primers representing enterobacterial repetitive intergenic consensus (ERIC) sequences, extragenic palindromic (REP) elements, and polymorphic GC-rich repetitive sequences (PGRS) constituted the repetitive element-PCR. We were able to generate 40, 40 and 58 genotypic groupings using the 1060, 1254 and 1283 RAPD primers, respectively. Using the ERIC, REP and PGRS primers, 19, 54 and 60 unique genotypic profiles were yielded, respectively. The PGRS primers, which were developed to amplify GC-rich repetitive sequences in the genome of Mycobacteria, were the most discriminatory. These data indicate that both of these PCR-based approaches are a valid means of discriminating strain differences among isolates of S. marcescens and the amount of differentiation depends on the primer used. These techniques should prove useful for routine surveillance or in examining outbreaks of S. marcescens in clinical settings.

journal_name

FEMS Microbiol Lett

authors

Patton TG,Katz S,Sobieski RJ,Crupper SS

doi

10.1111/j.1574-6968.2001.tb09440.x

keywords:

subject

Has Abstract

pub_date

2001-01-01 00:00:00

pages

19-25

issue

1

eissn

0378-1097

issn

1574-6968

pii

S0378-1097(00)00494-8

journal_volume

194

pub_type

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