Deep Survey of GABAergic Interneurons: Emerging Insights From Gene-Isoform Transcriptomics.

Abstract:

:GABAergic interneuron diversity is a key feature in the brain that helps to create different brain activity patterns and behavioral states. Cell type classification schemes-based on anatomical, physiological and molecular features-have provided us with a detailed understanding of the distinct types that constitute this diversity and their contribution to brain function. Over recent years, the utility of single-cell RNAseq has majorly complemented this existing framework, vastly expanding our knowledge base, particularly regarding molecular features. Single-cell gene-expression profiles of tens of thousands of GABAergic cells from many different types are now available. The analysis of these data has shed new lights onto previous classification principles and illuminates a path towards a deeper understanding of molecular hallmarks behind interneuron diversity. A large part of such molecular features is synapse-related. These include ion channels and receptors, as well as key synaptic organizers and trans-synaptic signaling molecules. Increasing evidence suggests that transcriptional and post-transcriptional modifications further diversify these molecules and generate cell type-specific features. Thus, unraveling the cell type-specific nature of gene-isoform expression will be a key in cell type classification. This review article discusses progress in the transcriptomic survey of interneurons and insights that have begun to manifest from isoform-level analyses.

journal_name

Front Mol Neurosci

authors

Que L,Winterer J,Földy C

doi

10.3389/fnmol.2019.00115

subject

Has Abstract

pub_date

2019-05-07 00:00:00

pages

115

issn

1662-5099

journal_volume

12

pub_type

杂志文章
  • Transient Receptor Potential Vanilloid 4 Inhibits γ-Aminobutyric Acid-Activated Current in Hippocampal Pyramidal Neurons.

    abstract::The balance between excitatory and inhibitory neurotransmitter systems is crucial for the modulation of neuronal excitability in the central nervous system (CNS). The activation of transient receptor potential vanilloid 4 (TRPV4) is reported to enhance the response of hippocampal glutamate receptors, but whether the i...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2016.00077

    authors: Hong Z,Tian Y,Qi M,Li Y,Du Y,Chen L,Liu W,Chen L

    更新日期:2016-08-26 00:00:00

  • EZH2 Is Essential for Fate Determination in the Mammalian Isthmic Area.

    abstract::The polycomb group proteins (PcGs) are a group of epigenetic factors associated with gene silencing. They are found in several families of multiprotein complexes, including polycomb repressive complex 2 (PRC2). EZH2, EED and SUZ12 form the core components of the PRC2 complex, which is responsible for the mono, di- and...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2019.00076

    authors: Wever I,Wagemans CMRJ,Smidt MP

    更新日期:2019-04-09 00:00:00

  • Alpha2-Containing Glycine Receptors Promote Neonatal Spontaneous Activity of Striatal Medium Spiny Neurons and Support Maturation of Glutamatergic Inputs.

    abstract::Glycine receptors (GlyRs) containing the α2 subunit are highly expressed in the developing brain, where they regulate neuronal migration and maturation, promote spontaneous network activity and subsequent development of synaptic connections. Mutations in GLRA2 are associated with autism spectrum disorder, but the unde...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2018.00380

    authors: Comhair J,Devoght J,Morelli G,Harvey RJ,Briz V,Borrie SC,Bagni C,Rigo JM,Schiffmann SN,Gall D,Brône B,Molchanova SM

    更新日期:2018-10-15 00:00:00

  • Neuron-specific regulation of class I PI3K catalytic subunits and their dysfunction in brain disorders.

    abstract::The phosphoinositide 3-kinase (PI3K) complex plays important roles in virtually all cells of the body. The enzymatic activity of PI3K to phosphorylate phosphoinositides in the membrane is mediated by a group of catalytic and regulatory subunits. Among those, the class I catalytic subunits, p110α, p110β, p110γ, and p11...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章,评审

    doi:10.3389/fnmol.2014.00012

    authors: Gross C,Bassell GJ

    更新日期:2014-02-13 00:00:00

  • Fragile-X Syndrome Is Associated With NMDA Receptor Hypofunction and Reduced Dendritic Complexity in Mature Dentate Granule Cells.

    abstract::Fragile X syndrome (FXS) is the most common form of inherited intellectual disability. It is caused by the overexpansion of cytosine-guanine-guanine (CGG) trinucleotide in Fmr1 gene, resulting in complete loss of the fragile X mental retardation protein (FMRP). Previous studies using Fmr1 knockout (Fmr1 KO) mice have ...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2018.00495

    authors: Yau SY,Bettio L,Chiu J,Chiu C,Christie BR

    更新日期:2019-01-17 00:00:00

  • Disturbed Interhemispheric Functional Connectivity Rather than Structural Connectivity in Irritable Bowel Syndrome.

    abstract::Neuroimaging studies have demonstrated that irritable bowel syndrome (IBS)-a relapsing functional bowel disorder-presents with disrupted brain connections. However, little is known about the alterations of interhemispheric functional connectivity and underlying structural connectivity in IBS. This study combined resti...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2016.00141

    authors: Qi R,Liu C,Weng Y,Xu Q,Chen L,Wang F,Zhang LJ,Lu GM

    更新日期:2016-12-06 00:00:00

  • The Binding Properties and Physiological Functions of Recoverin.

    abstract::Recoverin (Rcv) is a low molecular-weight, neuronal calcium sensor (NCS) primarily located in photoreceptor outer segments of the vertebrate retina. Calcium ions (Ca2+)-bound Rcv has been proposed to inhibit G-protein-coupled receptor kinase (GRKs) in darkness. During the light response, the Ca2+-free Rcv releases GRK...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章,评审

    doi:10.3389/fnmol.2018.00473

    authors: Zang J,Neuhauss SCF

    更新日期:2018-12-20 00:00:00

  • Regulation of intraocular pressure by soluble and membrane guanylate cyclases and their role in glaucoma.

    abstract::Glaucoma is a progressive optic neuropathy characterized by visual field defects that ultimately lead to irreversible blindness (Alward, 2000; Anderson et al., 2006). By the year 2020, an estimated 80 million people will have glaucoma, 11 million of which will be bilaterally blind. Primary open-angle glaucoma (POAG) i...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章,评审

    doi:10.3389/fnmol.2014.00038

    authors: Buys ES,Potter LR,Pasquale LR,Ksander BR

    更新日期:2014-05-19 00:00:00

  • Corrigendum: A Single Dose of 5-MeO-DMT Stimulates Cell Proliferation, Neuronal Survivability, Morphological and Functional Changes in Adult Mice Ventral Dentate Gyrus.

    abstract::[This corrects the article DOI: 10.3389/fnmol.2018.00312.]. ...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章,已发布勘误

    doi:10.3389/fnmol.2019.00079

    authors: Lima da Cruz RV,Moulin TC,Petiz LL,Leão RN

    更新日期:2019-04-04 00:00:00

  • Novel Strategies for the Generation of Neuronal Diversity: Lessons From the Fly Visual System.

    abstract::Among all organs of an adult animal, the central nervous system stands out because of its vast complexity and morphological diversity. During early development, the entire central nervous system develops from an apparently homogenous group of progenitors that differentiate into all neural cell types. Therefore, unders...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章,评审

    doi:10.3389/fnmol.2019.00140

    authors: Contreras EG,Sierralta J,Oliva C

    更新日期:2019-05-31 00:00:00

  • Membrane Fusion Involved in Neurotransmission: Glimpse from Electron Microscope and Molecular Simulation.

    abstract::Membrane fusion is one of the most fundamental physiological processes in eukaryotes for triggering the fusion of lipid and content, as well as the neurotransmission. However, the architecture features of neurotransmitter release machinery and interdependent mechanism of synaptic membrane fusion have not been extensiv...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章,评审

    doi:10.3389/fnmol.2017.00168

    authors: Yang Z,Gou L,Chen S,Li N,Zhang S,Zhang L

    更新日期:2017-06-07 00:00:00

  • Structure of Heteropentameric GABAA Receptors and Receptor-Anchoring Properties of Gephyrin.

    abstract::γ-Aminobutyric acid type A receptors (GABAARs) mediate the majority of fast synaptic inhibition in the central nervous system (CNS). GABAARs belong to the Cys-loop superfamily of pentameric ligand-gated ion channels (pLGIC) and are assembled from 19 different subunits. As dysfunctional GABAergic neurotransmission mani...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2019.00191

    authors: Kasaragod VB,Schindelin H

    更新日期:2019-08-07 00:00:00

  • Neuronal Culture Microenvironments Determine Preferences in Bioenergetic Pathway Use.

    abstract::In the brain, metabolic supply and demand is directly coupled to neuronal activation. Methods for culturing primary rodent brain cells have come of age and are geared toward sophisticated modeling of human brain physiology and pathology. However, the impact of the culture microenvironment on neuronal function is rarel...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2017.00305

    authors: Sünwoldt J,Bosche B,Meisel A,Mergenthaler P

    更新日期:2017-09-29 00:00:00

  • The Biochemistry and Epigenetics of Epilepsy: Focus on Adenosine and Glycine.

    abstract::Epilepsy, one of the most prevalent neurological conditions, presents as a complex disorder of network homeostasis characterized by spontaneous non-provoked seizures and associated comorbidities. Currently used antiepileptic drugs have been designed to suppress neuronal hyperexcitability and thereby to suppress epilep...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章,评审

    doi:10.3389/fnmol.2016.00026

    authors: Boison D

    更新日期:2016-04-13 00:00:00

  • Schwann Cell Precursors; Multipotent Glial Cells in Embryonic Nerves.

    abstract::The cells of the neural crest, often referred to as neural crest stem cells, give rise to a number of sub-lineages, one of which is Schwann cells, the glial cells of peripheral nerves. Crest cells transform to adult Schwann cells through the generation of two well defined intermediate stages, the Schwann cell precurso...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章,评审

    doi:10.3389/fnmol.2019.00069

    authors: Jessen KR,Mirsky R

    更新日期:2019-03-26 00:00:00

  • Cues to Opening Mechanisms From in Silico Electric Field Excitation of Cx26 Hemichannel and in Vitro Mutagenesis Studies in HeLa Transfectans.

    abstract::Connexin channels play numerous essential roles in virtually every organ by mediating solute exchange between adjacent cells, or between cytoplasm and extracellular milieu. Our understanding of the structure-function relationship of connexin channels relies on X-ray crystallographic data for human connexin 26 (hCx26) ...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2018.00170

    authors: Zonta F,Buratto D,Crispino G,Carrer A,Bruno F,Yang G,Mammano F,Pantano S

    更新日期:2018-05-31 00:00:00

  • Astrocytes and Microglia Are Resistant to NAD+-Mediated Cell Death Along the ARTC2/P2X7 Axis.

    abstract::ADP-ribosylation of the P2X7k splice variant on mouse T cells by Ecto-ADP-ribosyltransferase ARTC2.2 in response to its substrate extracellular nicotinamide adenine dinucleotide (NAD+) triggers cell death. Since NAD+ is released as a danger signal during tissue damage, this NAD+-induced cell death (NICD) may impact th...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2019.00330

    authors: Rissiek B,Stabernack J,Cordes M,Duan Y,Behr S,Menzel S,Magnus T,Koch-Nolte F

    更新日期:2020-01-14 00:00:00

  • Can Ketones Help Rescue Brain Fuel Supply in Later Life? Implications for Cognitive Health during Aging and the Treatment of Alzheimer's Disease.

    abstract::We propose that brain energy deficit is an important pre-symptomatic feature of Alzheimer's disease (AD) that requires closer attention in the development of AD therapeutics. Our rationale is fourfold: (i) Glucose uptake is lower in the frontal cortex of people >65 years-old despite cognitive scores that are normal fo...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2016.00053

    authors: Cunnane SC,Courchesne-Loyer A,Vandenberghe C,St-Pierre V,Fortier M,Hennebelle M,Croteau E,Bocti C,Fulop T,Castellano CA

    更新日期:2016-07-08 00:00:00

  • PAK6 Phosphorylates 14-3-3γ to Regulate Steady State Phosphorylation of LRRK2.

    abstract::Mutations in Leucine-rich repeat kinase 2 (LRRK2) are associated with Parkinson's disease (PD) and, as such, LRRK2 is considered a promising therapeutic target for age-related neurodegeneration. Although the cellular functions of LRRK2 in health and disease are incompletely understood, robust evidence indicates that P...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2017.00417

    authors: Civiero L,Cogo S,Kiekens A,Morganti C,Tessari I,Lobbestael E,Baekelandt V,Taymans JM,Chartier-Harlin MC,Franchin C,Arrigoni G,Lewis PA,Piccoli G,Bubacco L,Cookson MR,Pinton P,Greggio E

    更新日期:2017-12-14 00:00:00

  • Transcription Factor NFAT5 Promotes Glioblastoma Cell-driven Angiogenesis via SBF2-AS1/miR-338-3p-Mediated EGFL7 Expression Change.

    abstract::Glioblastoma (GBM) is the most aggressive primary intracranial tumor of adults and confers a poor prognosis due to high vascularization. Hence anti-angiogenic therapy has become a promising strategy for GBM treatment. In this study, the transcription factor nuclear factor of activated T-cells 5 (NFAT5) was significant...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2017.00301

    authors: Yu H,Zheng J,Liu X,Xue Y,Shen S,Zhao L,Li Z,Liu Y

    更新日期:2017-09-21 00:00:00

  • The Protective Effect of Vanadium on Cognitive Impairment and the Neuropathology of Alzheimer's Disease in APPSwe/PS1dE9 Mice.

    abstract::Alzheimer's disease (AD) is a widely distributed neurodegenerative disease characterized clinically by cognitive deficits and pathologically by formation of amyloid-β (Aβ) plaque and neurofibrillary tangles (NFTs) in the brain. Vanadium is a biological trace element that has a function to mimic insulin for diabetes. B...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2020.00021

    authors: He Z,Han S,Zhu H,Hu X,Li X,Hou C,Wu C,Xie Q,Li N,Du X,Ni J,Liu Q

    更新日期:2020-03-10 00:00:00

  • Fyn Signaling Is Compartmentalized to Dopamine D1 Receptor Expressing Neurons in the Dorsal Medial Striatum.

    abstract::The tyrosine kinase Fyn plays an important role in synaptic plasticity, learning, and memory. Here we report that Fyn is activated in response to 15 min D1 receptor (D1R) but not D2 receptor (D2R) stimulation specifically in the dorsomedial striatum (DMS) of mice but not in the other substriatal regions, the dorsolate...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2017.00273

    authors: Phamluong K,Darcq E,Wu S,Sakhai SA,Ron D

    更新日期:2017-08-31 00:00:00

  • Sex Hormones Regulate SHANK Expression.

    abstract::Autism spectrum disorders (ASD) have a higher prevalence in male individuals compared to females, with a ratio of affected boys compared to girls of 4:1 for ASD and 11:1 for Asperger syndrome. Mutations in the SHANK genes (comprising SHANK1, SHANK2 and SHANK3) coding for postsynaptic scaffolding proteins have been tig...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2018.00337

    authors: Berkel S,Eltokhi A,Fröhlich H,Porras-Gonzalez D,Rafiullah R,Sprengel R,Rappold GA

    更新日期:2018-09-25 00:00:00

  • The Regulatory Role of Long Noncoding RNAs in Different Brain Cell Types Involved in Ischemic Stroke.

    abstract::Stroke results in high morbidity and high mortality worldwide, with ischemic stroke accounting for 80% to 85%. As effective treatments for ischemic stroke remain limited because of the narrow therapeutic time window, a better understanding of the pathologic mechanism and new therapeutic intervention targets are needed...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章,评审

    doi:10.3389/fnmol.2019.00061

    authors: Chen R,Xu X,Huang L,Zhong W,Cui L

    更新日期:2019-03-22 00:00:00

  • Nicotine Prevents Oxidative Stress-Induced Hippocampal Neuronal Injury Through α7-nAChR/Erk1/2 Signaling Pathway.

    abstract::Oxidative stress-induced neuronal damage has been implicated to play a dominant role in neurodegenerative disorders, such as Alzheimer's disease (AD). Nicotine, a principal additive compound for tobacco users, is thought as a candidate to attenuate amyloid-β-mediated neurotoxicity and NMDA-induced excitotoxicity. Prev...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2020.557647

    authors: Dong Y,Bi W,Zheng K,Zhu E,Wang S,Xiong Y,Chang J,Jiang J,Liu B,Lu Z,Cheng Y

    更新日期:2020-11-12 00:00:00

  • Mecp2 Mediates Experience-Dependent Transcriptional Upregulation of Ryanodine Receptor Type-3.

    abstract::Mecp2 is a DNA methylation reader that plays a critical role in experience-dependent plasticity. Increasing evidence supports a role for epigenetic modifications in activity-induced gene expression. Hence, candidate genes related to such phenomena are of great interest. Ryanodine receptors are intracellular calcium ch...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2017.00188

    authors: Torres RF,Hidalgo C,Kerr B

    更新日期:2017-06-13 00:00:00

  • Functional Status of Neuronal Calcium Sensor-1 Is Modulated by Zinc Binding.

    abstract::Neuronal calcium sensor-1 (NCS-1) protein is abundantly expressed in the central nervous system and retinal neurons, where it regulates many vital processes such as synaptic transmission. It coordinates three calcium ions by EF-hands 2-4, thereby transducing Ca2+ signals to a wide range of protein targets, including G...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2018.00459

    authors: Tsvetkov PO,Roman AY,Baksheeva VE,Nazipova AA,Shevelyova MP,Vladimirov VI,Buyanova MF,Zinchenko DV,Zamyatnin AA Jr,Devred F,Golovin AV,Permyakov SE,Zernii EY

    更新日期:2018-12-14 00:00:00

  • Long Non-coding RNA TUG1 Sponges Mir-145a-5p to Regulate Microglial Polarization After Oxygen-Glucose Deprivation.

    abstract::Microglia plays a critical role in neuroinflammation after ischemic stroke by releasing diverse inflammatory cytokines. Long non-coding RNA taurine up-regulated gene 1 (lncRNA TUG1) is widely expressed in adult brain and has been reported to participate in multiple biological processes associated with nervous system d...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2019.00215

    authors: Wang H,Liao S,Li H,Chen Y,Yu J

    更新日期:2019-09-10 00:00:00

  • Co-administration of Anti microRNA-124 and -137 Oligonucleotides Prevents Hippocampal Neural Stem Cell Loss Upon Non-convulsive Seizures.

    abstract::Convulsive seizures promote adult hippocampal neurogenesis (AHN) through a transient activation of neural stem/progenitor cells (NSPCs) in the subgranular zone (SGZ) of the dentate gyrus (DG). However, in a significant population of epilepsy patients, non-convulsive seizures (ncSZ) are observed. The response of NSPCs ...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2019.00031

    authors: Bielefeld P,Schouten M,Meijer GM,Breuk MJ,Geijtenbeek K,Karayel S,Tiaglik A,Vuuregge AH,Willems RAL,Witkamp D,Lucassen PJ,Encinas JM,Fitzsimons CP

    更新日期:2019-02-19 00:00:00

  • Role of transcription factors in peripheral nerve regeneration.

    abstract::Following axotomy, the activation of multiple intracellular signaling cascades causes the expression of a cocktail of regeneration-associated transcription factors which interact with each other to determine the fate of the injured neurons. The nerve injury response is channeled through manifold and parallel pathways,...

    journal_title:Frontiers in molecular neuroscience

    pub_type: 杂志文章

    doi:10.3389/fnmol.2012.00008

    authors: Patodia S,Raivich G

    更新日期:2012-02-10 00:00:00