Crystallization of biological macromolecules for X-ray diffraction studies.

Abstract:

:Advances in the crystallization of biological macromolecules have come not only from the application of biochemical, molecular biological and immunological principles and techniques, but also from continued efforts to understand the crystallization process. Developments in crystallization methodologies, protocols, and reagents are also facilitating crystallization efforts.

journal_name

Curr Opin Struct Biol

authors

Gilliland GL,Ladner JE

doi

10.1016/s0959-440x(96)80024-8

subject

Has Abstract

pub_date

1996-10-01 00:00:00

pages

595-603

issue

5

eissn

0959-440X

issn

1879-033X

pii

S0959-440X(96)80024-8

journal_volume

6

pub_type

杂志文章,评审
  • Scoring functions for protein-protein interactions.

    abstract::The computational evaluation of protein-protein interactions will play an important role in organising the wealth of data being generated by high-throughput initiatives. Here we discuss future applications, report recent developments and identify areas requiring further investigation. Many functions have been develope...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2013.06.017

    authors: Moal IH,Moretti R,Baker D,Fernández-Recio J

    更新日期:2013-12-01 00:00:00

  • Structural basis for ion selectivity and engineering in channelrhodopsins.

    abstract::Channelrhodopsins have become an integral part of modern neuroscience approaches due to their ability to control neuronal activity in targeted cell populations. The recent determination of several channelrhodopsin X-ray structures now enables us to study their function with unprecedented molecular precision. We will d...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2019.04.008

    authors: Rappleye M,Berndt A

    更新日期:2019-08-01 00:00:00

  • Protein-protein interactions in the allosteric regulation of protein kinases.

    abstract::Protein-protein interactions involving the catalytic domain of protein kinases are likely to be generally important in the regulation of signal transduction pathways, but are rather sparsely represented in crystal structures. Recently determined structures of the kinase domains of the mitogen-activated protein kinase ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2006.10.007

    authors: Pellicena P,Kuriyan J

    更新日期:2006-12-01 00:00:00

  • Probing RNA structure in vivo.

    abstract::RNA structure underpins many essential functions in biology. New chemical reagents and techniques for probing RNA structure in living cells have emerged in recent years. High-throughput, genome-wide techniques such as Structure-seq2 and DMS-MaPseq exploit nucleobase modification by dimethylsulfate (DMS) to obtain comp...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2019.07.008

    authors: Mitchell D 3rd,Assmann SM,Bevilacqua PC

    更新日期:2019-12-01 00:00:00

  • Structural insights into leucine-rich repeat-containing synaptic cleft molecules.

    abstract::Synapses are cell adhesion structures specialized for signal transmission between neurons. At the synapse, presynaptic and postsynaptic terminals of neurons are functionally connected but spatially separated and form a cleft. Membrane receptor-like cell adhesion molecules and secreted proteins in the synaptic cleft (s...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2019.01.001

    authors: Yamagata A,Fukai S

    更新日期:2019-02-01 00:00:00

  • Take home lessons from studies of related proteins.

    abstract::The 'Fold Approach' involves a detailed analysis of the folding of several topologically, structurally and/or evolutionarily related proteins. Such studies can reveal determinants of the folding mechanism beyond the gross topology, and can dissect the residues required for folding from those required for stability or ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2012.11.009

    authors: Nickson AA,Wensley BG,Clarke J

    更新日期:2013-02-01 00:00:00

  • Dynamics and adaptive benefits of modular protein evolution.

    abstract::During protein evolution, novel domain arrangements are continuously formed. Rearrangements are important for the creation of molecular biodiversity and for functional molecular changes which underlie developmental shifts in the bauplan of organisms. Here we review the mechanisms by which new arrangements arise and th...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2013.02.012

    authors: Bornberg-Bauer E,Albà MM

    更新日期:2013-06-01 00:00:00

  • Modulation of allosteric coupling by mutations: from protein dynamics and packing to altered native ensembles and function.

    abstract::A large body of work has gone into understanding the effect of mutations on protein structure and function. Conventional treatments have involved quantifying the change in stability, activity and relaxation rates of the mutants with respect to the wild-type protein. However, it is now becoming increasingly apparent th...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2018.09.004

    authors: Naganathan AN

    更新日期:2019-02-01 00:00:00

  • Covalently circularized nanodiscs; challenges and applications.

    abstract::Covalently circularized nanodiscs (cNDs) represent a significant advance in the durability and applicability of nanodisc technology. The new cNDs demonstrate higher size homogeneity and improved stability compared with that of non-circularized forms. Moreover, cNDs can be prepared at various defined sizes up to 80-nm ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2018.03.014

    authors: Nasr ML,Wagner G

    更新日期:2018-08-01 00:00:00

  • How the centriole builds its cilium: of mothers, daughters, and the acquisition of appendages.

    abstract::Centrioles are microtubule-based structures in eukaryotic cells. From organizing the microtubule cytoskeleton during interphase to focusing the mitotic spindle during mitosis, centrioles are busy at all stages of the cell cycle. One crucial interphase function of centrioles is to assemble cilia, microtubular projectio...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2020.09.006

    authors: Kumar D,Reiter J

    更新日期:2020-11-04 00:00:00

  • Promiscuity, impersonation and accommodation: evolution of plant specialized metabolism.

    abstract::Specialized metabolic enzymes and metabolite diversity evolve through a variety of mechanisms including promiscuity, changes in substrate specificity, modifications of gene expression and gene duplication. For example, gene duplication and substrate binding site changes led to the evolution of the glucosinolate biosyn...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2017.07.005

    authors: Leong BJ,Last RL

    更新日期:2017-12-01 00:00:00

  • Packing a punch: the mechanism of pore formation by cholesterol dependent cytolysins and membrane attack complex/perforin-like proteins.

    abstract::The bacterial cholesterol dependent cytolysins (CDCs) and membrane attack complex/perforin-like proteins (MACPF) represent two major branches of a large, exceptionally diverged superfamily. Most characterized CDC/MACPF proteins form large pores that function in immunity, venoms, and pathogenesis. Extensive structural,...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2012.04.008

    authors: Dunstone MA,Tweten RK

    更新日期:2012-06-01 00:00:00

  • Core-directed protein design.

    abstract::For various reasons, it seems sensible to redesign or design proteins from the inside out. Past approaches in this field have involved iterations of mutagenesis and characterisation to 'evolve' designs. Increasingly, combinatorial approaches are being taken to select 'fit' sequences from libraries of variant proteins....

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(00)00234-7

    authors: Woolfson DN

    更新日期:2001-08-01 00:00:00

  • A new chapter in the transcription SAGA.

    abstract::Eukaryotic transcriptional coactivators are multi-subunit complexes that both modify chromatin and recognize histone modifications. Until recently, structural information on these large complexes has been limited to isolated enzymatic domains or chromatin-binding motifs. This review summarizes recent structural studie...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2011.09.004

    authors: Samara NL,Wolberger C

    更新日期:2011-12-01 00:00:00

  • Engineering allosteric communication.

    abstract::Protein allostery is a vitally important protein function that has proven to be a vexing problem to understand at the molecular level. Allosteric communication is a hallmark of many protein functions. However, despite more than four decades of study the details regarding allosteric communication in protein systems are...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2020.05.004

    authors: Herde ZD,Short AE,Kay VE,Huang BD,Realff MJ,Wilson CJ

    更新日期:2020-08-01 00:00:00

  • New insights into no-go, non-stop and nonsense-mediated mRNA decay complexes.

    abstract::Eukaryotes possess a variety of translational control mechanisms which function in the surveillance of mRNAs, discriminating between normal and aberrant translation elongation and termination, triggering mRNA decay. The three major evolutionarily conserved eukaryotic pathways are No-Go, Non-Stop and Nonsense-Mediated ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2020.06.011

    authors: Powers KT,Szeto JA,Schaffitzel C

    更新日期:2020-12-01 00:00:00

  • Structure-based drug design.

    abstract::There are now many successful examples of the design of new ligands based on knowledge of target protein structures. In most cases those ligands are unsuitable as drugs because of problems of toxicity, stability or bioavailability. The past twelve months have also seen the description of the structures of many protein...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/0959-440x(94)90268-2

    authors: Colman PM

    更新日期:1994-12-01 00:00:00

  • Structure and mechanism of ABC transporters.

    abstract::ATP-binding cassette (ABC) transporters are central to many physiological processes, including the uptake of nutrients, the non-classical secretion of signaling molecules and toxins, multidrug resistance and the development of human disease. As one might expect from this spectrum of translocation events, these ubiquit...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(02)00399-8

    authors: Schmitt L,Tampé R

    更新日期:2002-12-01 00:00:00

  • A story with a good ending: tRNA 3'-end maturation by CCA-adding enzymes.

    abstract::CCA-adding enzymes (tRNA nucleotidyltransferases) are responsible for the maturation or repair of the functional 3' end of tRNAs. These enzymes are remarkable because they polymerize the essential nucleotides CCA onto the 3' terminus of tRNA precursors without using a nucleic acid template. Recent crystal structures, ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2005.12.001

    authors: Xiong Y,Steitz TA

    更新日期:2006-02-01 00:00:00

  • Structural investigation of the proton-coupled secondary transporters.

    abstract::Transmembrane proton gradients, known as Proton Motive Force (PMF), serve important physiological functions. In addition to driving ATP synthesis, PMF is harnessed by a large variety of secondary transporters to achieve 'uphill' translocation of specific substrates across the membrane. Proton-coupled secondary transpo...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2013.04.011

    authors: Yan N

    更新日期:2013-08-01 00:00:00

  • Predicting protein function from sequence and structural data.

    abstract::When a protein's function cannot be experimentally determined, it can often be inferred from sequence similarity. Should this process fail, analysis of the protein structure can provide functional clues or confirm tentative functional assignments inferred from the sequence. Many structure-based approaches exist (e.g. ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2005.04.003

    authors: Watson JD,Laskowski RA,Thornton JM

    更新日期:2005-06-01 00:00:00

  • Channel-forming toxins: tales of transformation.

    abstract::Channel-forming bacterial toxins undergo a series of remarkable changes in solubility, oligomerization state, structure and dynamics during the processes of membrane binding, assembly, membrane insertion and channel formation. Recent high-resolution crystal structures of channel-forming toxins, in both water-soluble a...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(97)80123-6

    authors: Gouaux E

    更新日期:1997-08-01 00:00:00

  • Engineering metal-binding sites in proteins.

    abstract::Metal-binding sites have been engineered into both de novo designed and naturally occurring proteins. Although the redesign of existing metal-binding sites in naturally occurring proteins still offers the most promise for a successful design, the more challenging goal of engineering metal-binding sites in de novo desi...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(97)80112-1

    authors: Lu Y,Valentine JS

    更新日期:1997-08-01 00:00:00

  • Peptide docking and structure-based characterization of peptide binding: from knowledge to know-how.

    abstract::Peptide-mediated interactions are gaining increased attention due to their predominant roles in the many regulatory processes that involve dynamic interactions between proteins. The structures of such interactions provide an excellent starting point for their characterization and manipulation, and can provide leads fo...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2013.07.006

    authors: London N,Raveh B,Schueler-Furman O

    更新日期:2013-12-01 00:00:00

  • Racing to build a wall: glycoconjugate assembly in Gram-positive and Gram-negative bacteria.

    abstract::The last two years have seen major advances in understanding the structural basis of bacterial cell envelope glycoconjugate biosynthesis, including capsules, lipopolysaccharide, teichoic acid, cellulose, and peptidoglycan. The recent crystal and cryo-electron microscopy structures of proteins involved in the initial g...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2020.11.013

    authors: Liston SD,Willis LM

    更新日期:2021-01-08 00:00:00

  • Molecular mechanism of phosphorylation-dependent arrestin activation.

    abstract::The past years have seen tremendous progress towards understanding how arrestins recognize phosphorylated G protein-coupled receptors (GPCRs). Two arrestin crystal structures, one of a pre-activated splice variant and one bound to a GPCR phosphopeptide, provided insights into the conformational changes upon phosphate ...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2014.07.006

    authors: Ostermaier MK,Schertler GF,Standfuss J

    更新日期:2014-12-01 00:00:00

  • Coupling of folding and binding for unstructured proteins.

    abstract::There are now numerous examples of proteins that are unstructured or only partially structured under physiological conditions and yet are nevertheless functional. Such proteins are especially prevalent in eukaryotes. In many cases, intrinsically disordered proteins adopt folded structures upon binding to their biologi...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-440x(02)00289-0

    authors: Dyson HJ,Wright PE

    更新日期:2002-02-01 00:00:00

  • Importance of protein dynamics in the structure-based drug discovery of class A G protein-coupled receptors (GPCRs).

    abstract::Demand for novel GPCR modulators is increasing as the association between the GPCR signaling pathway and numerous diseases such as cancers, psychological and metabolic disorders continues to be established. In silico structure-based drug design (SBDD) offers an outlet where researchers could exploit the accumulating s...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2019.03.015

    authors: Lee Y,Lazim R,Macalino SJY,Choi S

    更新日期:2019-04-01 00:00:00

  • Cellulosome assembly: paradigms are meant to be broken!

    abstract::Cohesin-Dockerin interactions are at the core of cellulosomal assembly and organization. They are highly specific and form stable complexes, allowing cellulosomes to adopt distinct conformations. Each cellulosomal system seems to have a particular organizational strategy that can vary in complexity according to the na...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/j.sbi.2018.03.012

    authors: Bule P,Pires VM,Fontes CM,Alves VD

    更新日期:2018-04-01 00:00:00

  • Pleckstrin homology domains: a fact file.

    abstract::Structures of three different pleckstrin homology domains have been determined within the past year. They have a common core consisting of a seven-stranded and strongly bent beta-sheet and a C-terminal alpha-helix that packs against the beta-sheet. Phosphatidylinositol 4,5-bisphosphate and related compounds specifical...

    journal_title:Current opinion in structural biology

    pub_type: 杂志文章,评审

    doi:10.1016/0959-440x(95)80104-9

    authors: Saraste M,Hyvönen M

    更新日期:1995-06-01 00:00:00