Phylogenetic and evolutionary relationships among yellow fever virus isolates in Africa.

Abstract:

:Previous studies with a limited number of strains have indicated that there are two genotypes of yellow fever (YF) virus in Africa, one in west Africa and the other in east and central Africa. We have examined the prM/M and a portion of the E protein for a panel of 38 wild strains of YF virus from Africa representing different countries and times of isolation. Examination of the strains revealed a more complex genetic relationship than previously reported. Overall, nucleotide substitutions varied from 0 to 25.8% and amino acid substitutions varied from 0 to 9.1%. Phylogenetic analysis using parsimony and neighbor-joining algorithms identified five distinct genotypes: central/east Africa, east Africa, Angola, west Africa I, and west Africa II. Extensive variation within genotypes was observed. Members of west African genotype II and central/east African genotype differed by 2.8% or less, while west Africa genotype I varied up to 6.8% at the nucleotide level. We speculate that the former two genotypes exist in enzootic transmission cycles, while the latter is genetically more heterogeneous due to regular human epidemics. The nucleotide sequence of the Angola genotype diverged from the others by 15.7 to 23.0% but only 0.4 to 5.6% at the amino acid level, suggesting that this genotype most likely diverged from a progenitor YF virus in east/central Africa many years ago, prior to the separation of the other east/central African strains analyzed in this study, and has evolved independently. These data demonstrate that there are multiple genotypes of YF virus in Africa and suggest independent evolution of YF virus in different areas of Africa.

journal_name

J Virol

journal_title

Journal of virology

authors

Mutebi JP,Wang H,Li L,Bryant JE,Barrett AD

doi

10.1128/JVI.75.15.6999-7008.2001

subject

Has Abstract

pub_date

2001-08-01 00:00:00

pages

6999-7008

issue

15

eissn

0022-538X

issn

1098-5514

journal_volume

75

pub_type

杂志文章
  • Analysis of deletions and thermosensitive mutations in Rous sarcoma virus gag protein p10.

    abstract::Rous sarcoma virus protein p10 is a gag component of the virion present in stoichiometric amount but of unknown function. To characterize this protein, a series of mutants of p10 with linker insertions or deletions was generated by site-directed mutagenesis of a cloned proviral DNA. The deletions and two of the linker...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.67.7.3826-3834.1993

    authors: Dupraz P,Spahr PF

    更新日期:1993-07-01 00:00:00

  • Restriction endonuclease mapping of unintegrated proviral DNA of Snyder-Theilen feline sarcoma virus: localization of sarcoma-specific sequences.

    abstract::Extrachromosomal DNA purified from mink cells acutely infected with the Snyder-Theilen strain of feline sarcoma virus (FeSV) was digested with restriction endonucleases, and the DNA fragments were electrophoretically separated, transferred to a solid substrate, and hybridized with radiolabeled DNA transcripts compleme...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.32.3.860-875.1979

    authors: Sherr CJ,Fedele LA,Donner L,Turek LP

    更新日期:1979-12-01 00:00:00

  • Intrahepatic Cross-Presentation and Hepatocellular Antigen Presentation Play Distinct Roles in the Induction of Hepatitis B Virus-Specific CD8+ T Cell Responses.

    abstract::CD8+ T cells are the key cellular effectors mediating the clearance of hepatitis B virus (HBV) infections. However, early immunological events surrounding the priming of HBV-specific CD8+ T cell responses remain poorly understood. This study examined the importance of priming location and the relative contribution of ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00920-18

    authors: Murata Y,Kawashima K,Sheikh K,Tanaka Y,Isogawa M

    更新日期:2018-10-12 00:00:00

  • Affinity Purification of the Hepatitis C Virus Replicase Identifies Valosin-Containing Protein, a Member of the ATPases Associated with Diverse Cellular Activities Family, as an Active Virus Replication Modulator.

    abstract::Like almost all of the positive-strand RNA viruses, hepatitis C virus (HCV) induces host intracellular membrane modification to form the membrane-bound viral replication complex (RC), within which viral replicases amplify the viral RNA genome. Despite accumulated information about how HCV co-opts host factors for vira...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01140-16

    authors: Yi Z,Fang C,Zou J,Xu J,Song W,Du X,Pan T,Lu H,Yuan Z

    更新日期:2016-10-14 00:00:00

  • Analysis of splice variants of the immediate-early 1 region of human cytomegalovirus.

    abstract::The major immediate-early (MIE) gene of human cytomegalovirus (HCMV) produces multiple mRNAs through differential splicing and polyadenylation. Reverse transcriptase PCR was used to characterize transcripts from exons 1, 2, 3, and 4 (immediate-early 1 [IE1]). The expected IE72 and IE19 mRNAs were detected, as well as ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.78.15.8191-8200.2004

    authors: Awasthi S,Isler JA,Alwine JC

    更新日期:2004-08-01 00:00:00

  • Infection of nonhuman primates with recombinant human metapneumovirus lacking the SH, G, or M2-2 protein categorizes each as a nonessential accessory protein and identifies vaccine candidates.

    abstract::Recombinant human metapneumovirus (HMPV) in which the SH, G, or M2 gene or open reading frame was deleted by reverse genetics was evaluated for replication and vaccine efficacy following topical administration to the respiratory tract of African green monkeys, a permissive primate host. Replication of the deltaSH viru...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.79.19.12608-12613.2005

    authors: Biacchesi S,Pham QN,Skiadopoulos MH,Murphy BR,Collins PL,Buchholz UJ

    更新日期:2005-10-01 00:00:00

  • Epitope determinants of a chimpanzee dengue virus type 4 (DENV-4)-neutralizing antibody and protection against DENV-4 challenge in mice and rhesus monkeys by passively transferred humanized antibody.

    abstract::The chimpanzee monoclonal antibody (MAb) 5H2 is specific for dengue virus type 4 (DENV-4) and neutralizes the virus at a high titer in vitro. The epitope detected by the antibody was mapped by sequencing neutralization escape variants of the virus. One variant contained a Lys174-Glu substitution and another contained ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01420-07

    authors: Lai CJ,Goncalvez AP,Men R,Wernly C,Donau O,Engle RE,Purcell RH

    更新日期:2007-12-01 00:00:00

  • Pathogenesis of Influenza D Virus in Cattle.

    abstract:UNLABELLED:Cattle have been proposed as the natural reservoir of a novel member of the virus family Orthomyxoviridae, which has been tentatively classified as influenza D virus (IDV). Although isolated from sick animals, it is unclear whether IDV causes any clinical disease in cattle. To address this aspect of Koch's p...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.03122-15

    authors: Ferguson L,Olivier AK,Genova S,Epperson WB,Smith DR,Schneider L,Barton K,McCuan K,Webby RJ,Wan XF

    更新日期:2016-05-27 00:00:00

  • Recombinant adeno-associated virus utilizes cell-specific infectious entry mechanisms.

    abstract:UNLABELLED:Understanding the entry and trafficking mechanism(s) of recombinant adeno-associated virus (rAAV) into host cells can lead to evolution in capsid and vector design and delivery methods, resulting in enhanced transduction and therapeutic gene expression. Variability of findings regarding the early entry pathw...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01971-14

    authors: Weinberg MS,Nicolson S,Bhatt AP,McLendon M,Li C,Samulski RJ

    更新日期:2014-11-01 00:00:00

  • Basal expression levels of IFNAR and Jak-STAT components are determinants of cell-type-specific differences in cardiac antiviral responses.

    abstract::Viral myocarditis is an important human disease, and reovirus-induced murine myocarditis provides an excellent model system for study. Cardiac myocytes, like neurons in the central nervous system, are not replenished, yet there is no cardiac protective equivalent to the blood-brain barrier. Thus, cardiac myocytes may ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01172-07

    authors: Zurney J,Howard KE,Sherry B

    更新日期:2007-12-01 00:00:00

  • A leucine zipper-like domain is essential for dimerization and encapsidation of bluetongue virus nucleocapsid protein VP4.

    abstract::The bluetongue virus (BTV) minor protein VP4, with molecular mass of 76 kDa, is one of the seven structural proteins and is located within the inner capsid of the virion. The protein has a putative leucine zipper near the carboxy terminus of the protein. In this study, we have investigated the functional activity of t...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.4.2983-2990.1998

    authors: Ramadevi N,Rodriguez J,Roy P

    更新日期:1998-04-01 00:00:00

  • Genetic analysis of the diversity and origin of hantaviruses in Peromyscus leucopus mice in North America.

    abstract::Nucleotide sequences were determined for the complete M genome segments of two distinct hantavirus genetic lineages which were detected in hantavirus antibody- and PCR-positive white-footed mice (Peromyscus leucopus) from Indiana and Oklahoma. Phylogenetic analyses indicated that although divergent from each other, th...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.1.57-64.1998

    authors: Morzunov SP,Rowe JE,Ksiazek TG,Peters CJ,St Jeor SC,Nichol ST

    更新日期:1998-01-01 00:00:00

  • Equine-Origin Immunoglobulin Fragments Protect Nonhuman Primates from Ebola Virus Disease.

    abstract::Ebola virus (EBOV) infections result in aggressive hemorrhagic fever in humans, with fatality rates reaching 90% and with no licensed specific therapeutics to treat ill patients. Advances over the past 5 years have firmly established monoclonal antibody (MAb)-based products as the most promising therapeutics for treat...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01548-18

    authors: Wang H,Wong G,Zhu W,He S,Zhao Y,Yan F,Rahim MN,Bi Y,Zhang Z,Cheng K,Jin H,Cao Z,Zheng X,Gai W,Bai J,Chen W,Zou Y,Gao Y,Gao GF,Yang S,Xia X,Qiu X

    更新日期:2019-02-19 00:00:00

  • Altered DNA mutation spectrum in aflatoxin b1-treated transgenic mice that express the hepatitis B virus x protein.

    abstract::Humans chronically infected with hepatitis B virus (HBV) are at further risk of liver cancer upon exposure to dietary aflatoxin B1 (AFB1), a carcinogenic product of the mold Aspergillus flavus. For the present study, we utilized double-transgenic mice (ATX mice) that express the HBV X protein (HBx) and possess a bacte...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/jvi.76.22.11770-11774.2002

    authors: Madden CR,Finegold MJ,Slagle BL

    更新日期:2002-11-01 00:00:00

  • Mapping Murine Corneal Neovascularization and Weight Loss Virulence Determinants in the Herpes Simplex Virus 1 Genome and the Detection of an Epistatic Interaction between the UL and IRS/US Regions.

    abstract:UNLABELLED:Herpes simplex virus 1 (HSV-1) most commonly causes recrudescent labial ulcers; however, it is also the leading cause of infectious blindness in developed countries. Previous research in animal models has demonstrated that the severity of HSV-1 ocular disease is influenced by three main factors: host innate ...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00821-16

    authors: Lee K,Kolb AW,Larsen I,Craven M,Brandt CR

    更新日期:2016-08-26 00:00:00

  • Liver-infiltrating lymphocytes in chronic human hepatitis C virus infection display an exhausted phenotype with high levels of PD-1 and low levels of CD127 expression.

    abstract::The majority of people infected with hepatitis C virus (HCV) fail to generate or maintain a T-cell response effective for viral clearance. Evidence from murine chronic viral infections shows that expression of the coinhibitory molecule PD-1 predicts CD8+ antiviral T-cell exhaustion and may contribute to inadequate pat...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02021-06

    authors: Radziewicz H,Ibegbu CC,Fernandez ML,Workowski KA,Obideen K,Wehbi M,Hanson HL,Steinberg JP,Masopust D,Wherry EJ,Altman JD,Rouse BT,Freeman GJ,Ahmed R,Grakoui A

    更新日期:2007-03-01 00:00:00

  • Recruitment of the nuclear form of uracil DNA glycosylase into virus particles participates in the full infectivity of HIV-1.

    abstract::The HIV-1 Vpr protein participates in the early steps of the virus life cycle by influencing the accuracy of reverse transcription. This role of Vpr was related to the recruitment of the nuclear form of the uracil DNA glycosylase (UNG2) enzyme into virus particles, but several conflicting findings have been reported r...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.05163-11

    authors: Guenzel CA,Hérate C,Le Rouzic E,Maidou-Peindara P,Sadler HA,Rouyez MC,Mansky LM,Benichou S

    更新日期:2012-03-01 00:00:00

  • Coronavirus multiplication: locations of genes for virion proteins on the avian infectious bronchitis virus genome.

    abstract::Six overlapping viral RNAs are synthesized in cells infected with the avian coronavirus infectious bronchitis virus (IBV). These RNAs contain a 3'-coterminal nested sequence set and were assumed to be viral mRNAs. The seven major IBV virion proteins are all produced by processing of three polypeptides of ca. 23, 51, a...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.50.1.22-29.1984

    authors: Stern DF,Sefton BM

    更新日期:1984-04-01 00:00:00

  • Replication-competent herpes simplex virus 1 isolates selected from cells transfected with a bacterial artificial chromosome DNA lacking only the UL49 gene vary with respect to the defect in the UL41 gene encoding host shutoff RNase.

    abstract::To generate a null U(L)49 gene mutant of herpes simplex virus 1 (HSV-1), we deleted from the viral DNA, encoded as a bacterial artificial chromosome (BAC), the U(L)49 open reading frame and, in a second step, restored it. Upon transfection into Vero cells, the BAC-DeltaU(L)49 DNA yielded foci of degenerated cells that...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.01239-07

    authors: Sciortino MT,Taddeo B,Giuffrè-Cuculletto M,Medici MA,Mastino A,Roizman B

    更新日期:2007-10-01 00:00:00

  • Mitochondrial DNA synthesis in adenovirus type 2-infected HeLa cells.

    abstract::Mitochondrial DNA synthesis in adenovirus type 2-infected HeLa cells was measured at various times from 0 to 24 h postinfection. Although viral infection effectively turned off host chromosomal DNA synthesis, mitochondrial DNA synthesis was not inhibited. These findings indicate a dissociation between the regulation o...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.22.2.340-345.1977

    authors: Fisher PB,Horwitz MS

    更新日期:1977-05-01 00:00:00

  • A structured viroid RNA serves as a substrate for dicer-like cleavage to produce biologically active small RNAs but is resistant to RNA-induced silencing complex-mediated degradation.

    abstract::RNA silencing is a potent means of antiviral defense in plants and animals. A hallmark of this defense response is the production of 21- to 24-nucleotide viral small RNAs via mechanisms that remain to be fully understood. Many viruses encode suppressors of RNA silencing, and some viral RNAs function directly as silenc...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.02339-06

    authors: Itaya A,Zhong X,Bundschuh R,Qi Y,Wang Y,Takeda R,Harris AR,Molina C,Nelson RS,Ding B

    更新日期:2007-03-01 00:00:00

  • Analysis of Moloney murine leukemia virus revertants mutated at the gag-pol junction.

    abstract::Among Moloney murine leukemia viruses (Mo-MuLVs) having stop codons other than UAG at the gag-pol junction, Mo-MuLV with UAA, but not with UGA, had a replication disadvantage. Mo-MuLV with a glutamine codon (CAG) at the junction did not replicate. A revertant of this virus consisted of the original virus and a virus w...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.65.11.6376-6379.1991

    authors: Odawara T,Yoshikura H,Ohshima M,Tanaka T,Jones DS,Nemoto F,Kuchino Y,Iwamoto A

    更新日期:1991-11-01 00:00:00

  • Hepatitis B virus X protein interacts with a probable cellular DNA repair protein.

    abstract::The mechanism of action of hepatitis B virus (HBV) X protein in transcriptional transactivation and in tumorigenesis remains obscure. We have used the yeast two-hybrid system to identify a cellular protein that can interact with HBV X protein. This protein, designated X-associated protein 1 (XAP-1), is a human homolog...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.2.1107-1114.1995

    authors: Lee TH,Elledge SJ,Butel JS

    更新日期:1995-02-01 00:00:00

  • Reactivation of human immunodeficiency virus type 2 in macaques after simian immunodeficiency virus SIVmac superinfection.

    abstract::By superinfection of human immunodeficiency virus type 2 (HIV-2) strain HIV-2ben-infected macaques with simian immunodeficiency virus (SIV) strain SIVmac, we investigated the mutual influences of an apathogenic and a pathogenic virus in vivo. Four rhesus and two cynomolgus monkeys were infected with HIV-2ben in 1988 a...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.69.3.1564-1574.1995

    authors: Petry H,Dittmer U,Stahl-Hennig C,Coulibaly C,Makoschey B,Fuchs D,Wachter H,Tolle T,Morys-Wortmann C,Kaup FJ

    更新日期:1995-03-01 00:00:00

  • Specific amino acid substitutions are not required for transformation by v-myb of avian myeloblastosis virus.

    abstract::The protein product of the v-myb oncogene of avian myeloblastosis virus, p48v-myb, differs structurally in several ways from its normal cellular homolog, p75c-myb. We demonstrated that the 11 specific amino acid substitutions found in two independent molecular clones of this virus were not required for the transformat...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.62.3.1093-1096.1988

    authors: Stober-Grässer U,Lipsick JS

    更新日期:1988-03-01 00:00:00

  • Ribonucleic acid bacteriophage release: requirement for host-controlled protein synthesis.

    abstract::The release of the ribonucleic acid (RNA)-containing phage MS2 from Escherichia coli is accompanied by cellular lysis at 37 C, whereas at 30 C phage are released from intact cells. Chloramphenicol or rifampin prevents the release of progeny phage particles at both temperatures. Neither drug causes an immediate cessati...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.8.3.257-264.1971

    authors: Engelberg H,Soudry E

    更新日期:1971-09-01 00:00:00

  • T-cell response to cottontail rabbit papillomavirus structural proteins in infected rabbits.

    abstract::Cottontail rabbit papillomavirus (CRPV)-induced papillomas progress at a high frequency to carcinomas and thus can serve as a model for high-cancer-risk human papillomavirus infection. Previously, we have shown that antibodies to nonstructural and structural proteins are detected in only a fraction of papilloma-bearin...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.68.6.4043-4048.1994

    authors: Selvakumar R,Borenstein LA,Lin YL,Ahmed R,Wettstein FO

    更新日期:1994-06-01 00:00:00

  • Altered central nervous system gene expression caused by congenitally acquired persistent infection with lymphocytic choriomeningitis virus.

    abstract::Neonatal infection of most mouse strains with lymphocytic choriomeningitis virus (LCMV) leads to a life-long persistent infection characterized by high virus loads in the central nervous system (CNS) in the absence of inflammation and tissue destruction. These mice, however, exhibit impaired learning and memory. The o...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.00795-06

    authors: Kunz S,Rojek JM,Roberts AJ,McGavern DB,Oldstone MB,de la Torre JC

    更新日期:2006-09-01 00:00:00

  • Identification of a cytoplasmic targeting/retention signal in a retroviral Gag polyprotein.

    abstract::Retroviral capsid assembly can occur by either of two distinct morphogenic processes: in type C viruses, the capsid assembles and buds at the plasma membrane, while in type B and D viruses, the capsid assembles within the cytoplasm and is then transported to the plasma membrane for budding. We have previously reported...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.73.7.5431-5437.1999

    authors: Choi G,Park S,Choi B,Hong S,Lee J,Hunter E,Rhee SS

    更新日期:1999-07-01 00:00:00

  • The second extracellular loop of CXCR4 determines its function as a receptor for feline immunodeficiency virus.

    abstract::The feline homolog of the alpha-chemokine receptor CXCR4 has recently been shown to support cell-cell fusion mediated by CXCR4-dependent strains of human immunodeficiency virus (HIV) and strains of feline immunodeficiency virus (FIV) that have been selected for growth in the Crandell feline kidney (CrFK) cell line. In...

    journal_title:Journal of virology

    pub_type: 杂志文章

    doi:10.1128/JVI.72.8.6475-6481.1998

    authors: Willett BJ,Adema K,Heveker N,Brelot A,Picard L,Alizon M,Turner JD,Hoxie JA,Peiper S,Neil JC,Hosie MJ

    更新日期:1998-08-01 00:00:00