Localization of the factor IX propeptide binding site on recombinant vitamin K dependent carboxylase using benzoylphenylalanine photoaffinity peptide inactivators.

Abstract:

:The propeptide binding/activation site on the vitamin K dependent carboxylase has been localized to a region of carboxylase between residues Arg +50 and Glu +225 by photoinactivation studies using [125I]tyrosyl-labeled benzoylphenylalanine (Bpa)-containing analogs of proFIX19, a peptide containing residues -18 to +1 of factor IX. Four proFIX19 analogs with Bpa substituents at -16, -13, -7, and -6 were synthesized. These peptides were specific photoinactivators of carboxylase and were used to label a His6-carboxylase construct produced in baculovirus-infected insect cells. Fragments of the labeled carboxylase produced by V8 protease digestion were analyzed by peptide-specific antibodies and by autoradiography. The propeptide recognition site was localized to the N-terminal one-third of the 94 kDa carboxylase. This is consistent with previous studies using a carboxylase substrate affinity label, N-(bromoacetyl)-FLEELY [Kuliopulos, A., Nelson, N.P., Yamada, M., Walsh, C.T., Furie, B., Furie, B.C., & Roth, D.A. (1994) J. Biol. Chem. 269, 21364-21370], indicating that the propeptide binding site and the FLEEL binding site are both located within the N-terminal one-third of the vitamin K dependent carboxylase.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Yamada M,Kuliopulos A,Nelson NP,Roth DA,Furie B,Furie BC,Walsh CT

doi

10.1021/bi00002a012

subject

Has Abstract

pub_date

1995-01-17 00:00:00

pages

481-9

issue

2

eissn

0006-2960

issn

1520-4995

journal_volume

34

pub_type

杂志文章
  • Electrostatic effects in myoglobin. Application of the modified Tanford-Kirkwood theory to myoglobins from horse, California grey whale, harbor seal, and California sea lion.

    abstract::The modified Tanford-Kirkwood electrostatic theory (Shire et al., 1974a) was applied to ferrimyoglobins from the following animal species: sperm whale (Physeter catodon), horse, California grey whale (Eschrichtius gibbosus), harbor seal (Phoca vitulina), and California sea lion (Zalophus californianus). Computations w...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00678a002

    authors: Shire SJ,Hanania GI,Gurd FR

    更新日期:1975-04-08 00:00:00

  • Amino acid 305 determines catalytic center accessibility in CYP3A4.

    abstract::Site-directed mutagenesis has been used to replace alanine 305 with phenylalanine (A305F) and serine (A305S) in the active site of cytochrome P450 3A4 (CYP3A4). Enzyme kinetics for diazepam, erythromycin, nifedipine, and testosterone metabolism have been determined for both mutants and wild-type CYP3A4. The A305F muta...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992372u

    authors: Fowler SM,Riley RJ,Pritchard MP,Sutcliffe MJ,Friedberg T,Wolf CR

    更新日期:2000-04-18 00:00:00

  • FtsZ filament dynamics at steady state: subunit exchange with and without nucleotide hydrolysis.

    abstract::We have measured three aspects of FtsZ filament dynamics at steady state: rates of GTP hydrolysis, subunit exchange between protofilaments, and disassembly induced by dilution or excess GDP. All three reactions were slowed with an increase in the potassium concentration from 100 to 500 mM, via replacement of potassium...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi8022653

    authors: Chen Y,Erickson HP

    更新日期:2009-07-21 00:00:00

  • Groups with polar characteristics can locate at both shallow and deep locations in membranes: the behavior of dansyl and related probes.

    abstract::To understand the relationship between the chemical structure of polar molecules and their membrane location, the behavior of dansyl (dimethylaminonaphthalenesulfonyl) and related polar fluorescent probes was examined. The depth of these probes in lipid bilayers was determined by parallax analysis of fluorescence quen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9726234

    authors: Asuncion-Punzalan E,Kachel K,London E

    更新日期:1998-03-31 00:00:00

  • Conservation of a helix-stabilizing dipole moment in the PP-fold family of regulatory peptides.

    abstract::Investigation of the charge distribution for all known members of the PP-fold family of peptides reveals a common pattern characterized by a cluster of negative charges in the beta-turn region and a cluster of positive charges in the receptor-binding region of the peptide. Detailed analysis of the electrostatic proper...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00063a005

    authors: Bjørnholm B,Jørgensen FS,Schwartz TW

    更新日期:1993-03-30 00:00:00

  • Transmembrane topography of the mitochondrial oxoglutarate carrier assessed by peptide-specific antibodies and enzymatic cleavage.

    abstract::The folding of the peptide chain of the bovine heart oxoglutarate carrier in the inner mitochondrial membrane and in the membrane of reconstituted proteoliposomes has been investigated by enzymatic and immunochemical approaches using proteinase K and polyclonal site-directed antibodies, respectively. Two peptides corr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00178a030

    authors: Bisaccia F,Capobianco L,Brandolin G,Palmieri F

    更新日期:1994-03-29 00:00:00

  • Movement of the Rieske iron-sulfur protein in the p-side bulk aqueous phase: effect of lumenal viscosity on redox reactions of the cytochrome b6f complex.

    abstract::Based on the atomic structures of the mitochondrial cytochrome bc(1) complex, it has been proposed that the soluble domain of the [2Fe-2S] Rieske iron-sulfur protein (ISP) must rotate by ca. 60 degrees and translate through an appreciable distance between two binding sites, proximal to cytochrome c(1) and to the lumen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9921992

    authors: Heimann S,Ponamarev MV,Cramer WA

    更新日期:2000-03-14 00:00:00

  • A new pathway for transmembrane electron transfer in photosynthetic reaction centers of Rhodobacter sphaeroides not involving the excited special pair.

    abstract::It is generally accepted that electron transfer in bacterial photosynthesis is driven by the first singlet excited state of a special pair of bacteriochlorophylls (P*). We have examined the first steps of electron transfer in a mutant of the Rhodobacter sphaeroides reaction center in which charge separation from P* is...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9703756

    authors: Van Brederode ME,Jones MR,Van Mourik F,Van Stokkum IH,Van Grondelle R

    更新日期:1997-06-10 00:00:00

  • Melting behavior of a covalently closed, single-stranded, circular DNA.

    abstract::We synthesized the 26-residue deoxynucleotide sequence d(TTCCT5GGAATTCCT5GGAA) which folds intramolecularly to form a dumbbell-shaped, double-hairpin structure with a gap between the 3' and the 5' ends. We used T4 polynucleotide kinase to phosphorylate the 5' end followed by T4 DNA ligase to close the 3' and 5' ends. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00427a037

    authors: Erie DA,Jones RA,Olson WK,Sinha NK,Breslauer KJ

    更新日期:1989-01-10 00:00:00

  • Competing Protonation and Halide Elimination as a Probe of the Character of Thiamin-Derived Reactive Intermediates.

    abstract::Decarboxylation reactions from comparable thiamin diphosphate- and thiamin-derived adducts of p-(halomethyl)benzoylformic acids in enzymic and non-enzymic reactions, respectively, reveal critical distinctions in otherwise similar Breslow intermediates. The ratio of protonation to chloride elimination from the Breslow ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00298

    authors: Bielecki M,Howe GW,Kluger R

    更新日期:2019-08-27 00:00:00

  • Functional epitopes for site 1 of human prolactin.

    abstract::Human prolactin (hPRL) binds two human prolactin receptor molecules, creating active heterotrimeric complexes. Receptors bind dissimilar hormone surfaces termed site 1 and site 2 in an obligate ordered process. We sought to map the functional epitopes in site 1 of hPRL. Extensive alanine mutagenesis (102 of the 199 re...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101838s

    authors: Rao GV,Brooks CL

    更新日期:2011-03-01 00:00:00

  • Phospholipid lateral phase separation and the partition of cis-parinaric acid and trans-parinaric acid among aqueous, solid lipid, and fluid lipid phases.

    abstract::The partition of cis-parinaric acid (9,11,13,15-cis, trans, trans,cis-octadecatetraenoic acid, cis-PnA) and trans-parinaric acid (9,11,13,15-all-trans-octadecatetraenoic acid, trans-PnA) among aqueous, solid lipid, and fluid lipid phases has been measured by three spectroscopic parameters: absorption spectral shifts, ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00576a012

    authors: Sklar LA,Miljanich GP,Dratz EA

    更新日期:1979-05-01 00:00:00

  • Efficient and selective photoaffinity labeling of the estrogen receptor using two nonsteroidal ligands that embody aryl azide or tetrafluoroaryl azide photoreactive functions.

    abstract::3-(4-Azido-2,3,5,6-tetrafluorobenzoyl)-6-hydroxy-2-(4- hydroxyphenyl)benzo[b]thiophene 1 (tetrafluoroaryl azide, TFAA) and its protio analogue 3-(4-azidobenzoyl)-6- hydroxy-2-(4-hydroxyphenyl)benzo[b]thiophene 2 (protioaryl azide, PAA), photoaffinity labeling (PAL) reagents for the estrogen receptor (ER), have been pr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00223a018

    authors: Pinney KG,Carlson KE,Katzenellenbogen BS,Katzenellenbogen JA

    更新日期:1991-03-05 00:00:00

  • Protein influences on porphyrin structure in cytochrome c: evidence from Raman difference spectroscopy.

    abstract::To probe the details of protein heme interactions, we have developed a Raman difference spectroscopic technique, which allows reliable detection of very small, approximately equal to 0.01 cm-1, frequency differences. When this technique is applied to heme proteins, structural differences in the protein which perturb t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00525a030

    authors: Shelnutt JA,Rousseau DL,Dethmers JK,Margoliash E

    更新日期:1981-10-27 00:00:00

  • Turnover and orientation of the major neural retina cell surface protein protected from tryptic cleavage by calcium.

    abstract::Calcium protects a limited number of embryonic chick neural retina cell surface proteins from tryptic cleavage. One glycoprotein of Mr approximately 1.3 X 10(5) and pI approximately 4.8 (gp130) is present in intact retinas and, in the presence of Ca2+, is both resistant to tryptic cleavage and poorly iodinated. When c...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00300a016

    authors: Cook JH,Pratt RS,Lilien J

    更新日期:1984-02-28 00:00:00

  • Mutagenesis of E477 or K505 in the B' domain of human topoisomerase II beta increases the requirement for magnesium ions during strand passage.

    abstract::A type II topoisomerase is essential for decatenating DNA replication products, and it accomplishes this task by passing one DNA duplex through a transient break in a second duplex. The B' domain of topoisomerase II contains three highly conserved motifs, EGDSA, PL(R/K)GK(I/L/M)LNVR, and IMTD(Q/A)DXD. We have investig...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi991328b

    authors: West KL,Meczes EL,Thorn R,Turnbull RM,Marshall R,Austin CA

    更新日期:2000-02-15 00:00:00

  • Phosphorylation-dependent sumoylation of estrogen-related receptor alpha1.

    abstract::We previously showed that estrogen-related receptor alpha1 (ERRalpha1) can compete with estrogen receptor alpha (ERalpha) for binding to estrogen response elements (EREs), repressing transcription in the mammary carcinoma cell line MCF-7. Given that ERRalpha1 can function in the absence of ligands and exists as a phos...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700316g

    authors: Vu EH,Kraus RJ,Mertz JE

    更新日期:2007-08-28 00:00:00

  • Affinity and sequence specificity of DNA binding and site selection for primer synthesis by Escherichia coli primase.

    abstract::Primase is an essential DNA replication enzyme in Escherichia coli and responsible for primer synthesis during lagging strand DNA replication. Although the interaction of primase with single-stranded DNA plays an important role in primer RNA and Okazaki fragment synthesis, the mechanism of DNA binding and site selecti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026711m

    authors: Khopde S,Biswas EE,Biswas SB

    更新日期:2002-12-17 00:00:00

  • Systematic comparison of statistical analyses of electronic and vibrational circular dichroism for secondary structure prediction of selected proteins.

    abstract::The electronic (ultraviolet) circular dichroism (UVCD) and vibrational circular dichroism (VCD) of 20 proteins are systematically compared as to their relationship to the secondary structures of these proteins. The UVCD spectra are statistically treated by use of the same factor analysis methods used previously for VC...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00242a012

    authors: Pancoska P,Keiderling TA

    更新日期:1991-07-16 00:00:00

  • Effects of an anti-beta monoclonal antibody on the interaction of the Escherichia coli RNA polymerase with the lac and TAC promoters.

    abstract::The effects of an inhibitory monoclonal antibody (mAb) raised against the beta subunit of the Escherichia coli RNA polymerase were determined on the kinetics and structural interactions during formation of the open promoter complex (RPo). Analysis of the kinetics of abortive initiation on linear and supercoiled templa...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00409a058

    authors: Rockwell P,Krakow JS

    更新日期:1988-05-03 00:00:00

  • Urea Mimics Nucleobases by Preserving the Helical Integrity of B-DNA Duplexes via Hydrogen Bonding and Stacking Interactions.

    abstract::Urea lesions are formed in DNA because of free radical damage of the thymine base, and their occurrence in DNA blocks DNA polymerases, which has deleterious consequences. Recently, it has been shown that urea is capable of forming hydrogen bonding and stacking interactions with nucleobases, which are responsible for t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00309

    authors: Suresh G,Padhi S,Patil I,Priyakumar UD

    更新日期:2016-10-11 00:00:00

  • Fucoxanthin-chlorophyll a/c light-harvesting complexes of Laminaria saccharina: partial amino acid sequences and arrangement in thylakoid membranes.

    abstract::The N-terminus of the major polypeptide component of the light-harvesting complex (LHC) from the brown alga Laminaria saccharina is blocked. Two partial sequences, one near the N-terminus and the other near the C-terminus, have been obtained by chemical cleavage with acetic acid and N-chlorosuccinimide. Four peptides ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00177a004

    authors: Douady D,Rousseau B,Caron L

    更新日期:1994-03-22 00:00:00

  • Chloroperoxidase, a janus enzyme.

    abstract::Chloroperoxidase is a versatile fungal heme-thiolate protein that catalyzes a variety of one-electron and two-electron oxidations. We report here that the alkylation of an essential histidine residue showed no effect on the one-electron peroxidations but inhibited two-electron oxidations. The pH profiles of different ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7022656

    authors: Manoj KM,Hager LP

    更新日期:2008-03-04 00:00:00

  • Iterative optimization of high-affinity protease inhibitors using phage display. 2. Plasma kallikrein and thrombin.

    abstract::As discussed in the accompanying paper [Markland, W., Ley, A. C., & Ladner, R. C. (1996) Biochemistry 35, 8045-8057], we generated libraries from the first Kunitz domain of human lipoprotein-associated coagulation inhibitor (LACI-D1) using multivalent M13 III display and derived potent inhibitors of human plasmin (PLA...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952629y

    authors: Markland W,Ley AC,Ladner RC

    更新日期:1996-06-18 00:00:00

  • Epsilon amino caproic acid inhibits streptokinase-plasminogen activator complex formation and substrate binding through kringle-dependent mechanisms.

    abstract::Lysine side chains induce conformational changes in plasminogen (Pg) that regulate the process of fibrinolysis or blood clot dissolution. A lysine side-chain mimic, epsilon amino caproic acid (EACA), enhances the activation of Pg by urinary-type and tissue-type Pg activators but inhibits Pg activation induced by strep...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992028x

    authors: Lin LF,Houng A,Reed GL

    更新日期:2000-04-25 00:00:00

  • Two homologues encoding human UDP-glucose:glycoprotein glucosyltransferase differ in mRNA expression and enzymatic activity.

    abstract::UDP-glucose:glycoprotein glucosyltransferase (UGT) is a soluble protein of the endoplasmic reticulum (ER) that operates as a gatekeeper for quality control by preventing transport of improperly folded glycoproteins out of the ER. We report the isolation of two cDNAs encoding human UDP-glucose:glycoprotein glucosyltran...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9916473

    authors: Arnold SM,Fessler LI,Fessler JH,Kaufman RJ

    更新日期:2000-03-07 00:00:00

  • The C-terminus of tissue factor pathway inhibitor is essential to its anticoagulant activity.

    abstract::Tissue factor pathway inhibitor (TFPI) from different cell lines shows up to 15-fold differences in the ratio of anticoagulant to chromogenic activity. The anticoagulant activity was dependent on the purification procedure used and it was possible to isolate two fractions of recombinant TFPI. Only one of these fractio...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00107a002

    authors: Nordfang O,Bjørn SE,Valentin S,Nielsen LS,Wildgoose P,Beck TC,Hedner U

    更新日期:1991-10-29 00:00:00

  • Binding and reactivity of Candida albicans estrogen binding protein with steroid and other substrates.

    abstract::In this report recombinant estrogen binding protein (EBP1), isolated originally from Candida albicans as a result of its high affinity for 17beta-estradiol, has been purified extensively using a modified affinity purification scheme originally developed for a homolog of EBP1, old yellow enzyme (OYE). It is shown that ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981106y

    authors: Buckman J,Miller SM

    更新日期:1998-10-06 00:00:00

  • Heme Gazing: Illuminating Eukaryotic Heme Trafficking, Dynamics, and Signaling with Fluorescent Heme Sensors.

    abstract::Heme (iron protoporphyrin IX) is an essential protein prosthetic group and signaling molecule required for most life on Earth. All heme-dependent processes require the dynamic and rapid mobilization of heme from sites of synthesis or uptake to hemoproteins present in virtually every subcellular compartment. The cytoto...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00007

    authors: Hanna DA,Martinez-Guzman O,Reddi AR

    更新日期:2017-04-04 00:00:00

  • Structural differences in the two agonist binding sites of the Torpedo nicotinic acetylcholine receptor revealed by time-resolved fluorescence spectroscopy.

    abstract::The nicotinic acetylcholine receptor (nAChR) from Torpedo marmorata carries two nonequivalent agonist binding sites at the alphadelta and alphagamma subunit interfaces. These sites have been characterized by time-resolved fluorescence with the partial nicotinic agonist dansyl-C(6)-choline (Dnscho). When bound to the d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi992811p

    authors: Martinez KL,Corringer PJ,Edelstein SJ,Changeux JP,Mérola F

    更新日期:2000-06-13 00:00:00