Transmembrane topography of the mitochondrial oxoglutarate carrier assessed by peptide-specific antibodies and enzymatic cleavage.

Abstract:

:The folding of the peptide chain of the bovine heart oxoglutarate carrier in the inner mitochondrial membrane and in the membrane of reconstituted proteoliposomes has been investigated by enzymatic and immunochemical approaches using proteinase K and polyclonal site-directed antibodies, respectively. Two peptides corresponding to the amino acid sequences 2-12 (N-terminal peptide) and 303-314 (C-terminal peptide) have been synthesized and coupled to ovalbumin before being used to immunize rabbits. The specificity of the generated antibodies was tested by enzyme-linked immunosorbent assay (ELISA) and by Western blot analysis. Both anti-N-terminal and anti-C-terminal antibodies reacted specifically with the corresponding peptides and with the isolated oxoglutarate carrier, whereas only anti-C-terminal antibodies immunodetected the carrier in mitochondrial lysates and reacted with the membrane-bound carrier in mitoplasts and in freeze-thawed mitochondria. This result indicated that the last 12 C-terminal amino acid residues of the oxoglutarate carrier protein are accessible from the cytosolic side of the inner mitochondrial membrane. Anti-C-terminal antibodies did not recognize the oxoglutarate carrier in reconstituted proteoliposomes unless the membrane was inverted, indicating that the carrier was inserted unidirectionally in proteoliposomes, with an orientation opposite that found in mitochondria. The immunological data were complemented by data from a limited proteolysis study performed on the membrane-bound oxoglutarate carrier in proteoliposomes, using proteinase K. Cleavage of the carrier caused a time-dependent inhibition of the oxoglutarate-oxoglutarate exchange activity of the reconstituted system. Four cleavage sites were identified, between Val-39 and Gln-40, between Tyr-61 and Lys-62, between Phe-169 and Arg-170, and between Arg-182 and Gly-183.(ABSTRACT TRUNCATED AT 250 WORDS)

journal_name

Biochemistry

journal_title

Biochemistry

authors

Bisaccia F,Capobianco L,Brandolin G,Palmieri F

doi

10.1021/bi00178a030

subject

Has Abstract

pub_date

1994-03-29 00:00:00

pages

3705-13

issue

12

eissn

0006-2960

issn

1520-4995

journal_volume

33

pub_type

杂志文章
  • Molecular structure of a fibrillar Alzheimer's A beta fragment.

    abstract::Amyloid-beta (Abeta) peptide deposition as fibrillar senile plaques is a key element in the pathology of Alzheimer's disease. Here we present a high-resolution structure of an Abeta amyloid fibril using magnetically aligned preparations of a central Abeta domain which forms representative amyloid fibrils. Diffraction ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000637v

    authors: Serpell LC,Blake CC,Fraser PE

    更新日期:2000-10-31 00:00:00

  • Site-directed mutagenesis identifies catalytic residues in the active site of Escherichia coli phosphofructokinase.

    abstract::Six active site mutants of Escherichia coli phosphofructokinase have been constructed and characterized using steady-state kinetics. All but one of the mutants (ES222) have significantly lower maximal activity, implicating these residues in the catalytic process. Replacement of Asp127, the key catalytic residue in the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00153a017

    authors: Berger SA,Evans PR

    更新日期:1992-09-29 00:00:00

  • Orientation of Human Microprocessor on Primary MicroRNAs.

    abstract::Single-stranded microRNAs (miRNAs) regulate gene expression by triggering mRNA degradation and/or inhibiting mRNA translation. miRNAs play important roles in various critical cellular processes and are associated with numerous human diseases, including cancer and neurodegenerative diseases. miRNA sequences are embedde...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.8b00944

    authors: Nguyen HM,Nguyen TD,Nguyen TL,Nguyen TA

    更新日期:2019-01-29 00:00:00

  • Evidence for partial secondary structure formation in the transition state for arc repressor refolding and dimerization.

    abstract::Structure formation and dimerization are concerted processes in the refolding of Arc repressor. The integrity of secondary structure in the transition state of Arc refolding has been investigated here by determining the changes in equilibrium stability and refolding/unfolding kinetics for a set of Ala --> Gly mutation...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000423d

    authors: Srivastava AK,Sauer RT

    更新日期:2000-07-18 00:00:00

  • Microtubule dynamic instability does not result from stabilization of microtubules by tubulin-GDP-Pi subunits.

    abstract::The proposal that microtubule dynamic instability results from stabilization of microtubule ends by tubulin-GDP-Pi subunits (where Pi is inorganic phosphate) [Melki et al. (1996) Biochemistry 35, 12038] was based on studies of GTP hydrolysis and microtubule assembly that showed that tubulin-GDP-Pi subunits can transie...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi972602+

    authors: Caplow M,Shanks J

    更新日期:1998-09-15 00:00:00

  • The photosystem of Rhodobacter sphaeroides assembles with zinc bacteriochlorophyll in a bchD (magnesium chelatase) mutant.

    abstract::A Rhodobacter sphaeroides bchD (magnesium chelatase) mutant was studied to determine the properties of its photosystem in the absence of bacteriochlorophyll (BChl). Western blots of reaction center H, M, and L (RC H/M/L) proteins from mutant membranes showed levels of 12% RC H, 32% RC L, and 46% RC M relative to those...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701407k

    authors: Jaschke PR,Beatty JT

    更新日期:2007-10-30 00:00:00

  • Sites of covalent attachment of CYP4 enzymes to heme: evidence for microheterogeneity of P450 heme orientation.

    abstract::Typical cytochrome P450s secure the heme prosthetic group with a cysteine thiolate ligand bound to the iron, electrostatic interactions with the heme propionate carboxylates, and hydrophobic interactions with the heme periphery. In addition to these interactions, CYP4B1 covalently binds heme through a monoester link f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051267j

    authors: Baer BR,Schuman JT,Campbell AP,Cheesman MJ,Nakano M,Moguilevsky N,Kunze KL,Rettie AE

    更新日期:2005-10-25 00:00:00

  • Binding to cisplatin-modified DNA by the Saccharomyces cerevisiae HMGB protein Nhp6A.

    abstract::Nhp6A is an abundant non-histone chromatin-associated protein in Saccharomyces cerevisiae that contains a minor groove DNA binding motif called the HMG box. In this report, we show that Nhp6Ap binds to cisplatin intrastrand cross-links on duplex DNA with a 40-fold greater affinity than to unmodified DNA with the same ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi012077l

    authors: Wong B,Masse JE,Yen YM,Giannikopoulos P,Feigon J,Johnson RC

    更新日期:2002-04-30 00:00:00

  • Polyisoprenol specificity in the Campylobacter jejuni N-linked glycosylation pathway.

    abstract::Campylobacter jejuni contains a general N-linked glycosylation pathway in which a heptasaccharide is sequentially assembled onto a polyisoprenyl diphosphate carrier and subsequently transferred to the asparagine side chain of an acceptor protein. The enzymes in the pathway function at a membrane interface and have in ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701956x

    authors: Chen MM,Weerapana E,Ciepichal E,Stupak J,Reid CW,Swiezewska E,Imperiali B

    更新日期:2007-12-18 00:00:00

  • Purification and immunogenicity of fusion VP1 protein of foot and mouth disease virus.

    abstract::A procedure has been developed to purify foot and mouth disease virus (FMDV) VP1 surface antigens from recombinant Escherichia coli. The VP1 antigens are expressed as fusion proteins derived from the E. coli Trp operon and VP1 surface protein of FMDV. The procedure is capable of recovering greater than 96% of the desi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00321a031

    authors: Shire SJ,Bock L,Ogez J,Builder S,Kleid D,Moore DM

    更新日期:1984-12-18 00:00:00

  • Structures of gangliosides from bovine adrenal medulla.

    abstract::Five gangliosides, accounting for over 95% of the total ganglioside fraction, were isolated from bovine adrenal medulla by preparative thin-layer chromatography and the carbohydrate structures determined by a combination of periodate oxidation and permethylation techniques. Partially methylated alditol acetates were g...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00678a026

    authors: Price H,Kundu S,Ledeen R

    更新日期:1975-04-08 00:00:00

  • Substrate specificity of homogeneous monkeypox virus uracil-DNA glycosylase.

    abstract::Weak or nonexistent smallpox immunity in today's human population raises concerns about the possibility of natural or provoked genetic modifications leading to re-emergence of variola virus and other poxviruses. Thus, the development of new antiviral strategies aimed at poxvirus infections in humans is a high priority...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700726a

    authors: Duraffour S,Ishchenko AA,Saparbaev M,Crance JM,Garin D

    更新日期:2007-10-23 00:00:00

  • Radiolabeling of natural adenosine triphosphatase inhibitor with phenyl (14C)isothiocyanate and study of its interaction with mitochondrial adenosine triphosphatase. Localization of inhibitor binding sites and stoichiometry of binding.

    abstract::The natural ATPase inhibitor (IF1) from beef heart mitochondria was labeled with phenyl (14C)isothiocyanate [(14C)PITC]. Chemical labeling by (14C)PITC does not modify the inhibitory properties of IF1, provided the number of residues of (14C)PITC bound per molecule of IF1 is lower than five to six, which corresponds t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00554a016

    authors: Klein G,Satre M,Dianoux AC,Vignais PV

    更新日期:1980-06-24 00:00:00

  • Entrapment of Water at the Transmembrane Helix-Helix Interface of Quiescin Sulfhydryl Oxidase 2.

    abstract::Little is known about how a membrane can regulate interactions between transmembrane helices. Here, we show that strong self-interaction of the transmembrane helix of human quiescin sulfhydryl oxidase 2 rests on a motif of conserved amino acids comprising one face of the helix. Atomistic molecular dynamics simulations...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b01239

    authors: Ried CL,Scharnagl C,Langosch D

    更新日期:2016-03-08 00:00:00

  • Contribution of the active site histidine residues of ribonuclease A to nucleic acid binding.

    abstract::His12 and His119 are critical for catalysis of RNA cleavage by ribonuclease A (RNase A). Substitution of either residue with an alanine decreases the value of k(cat)/K(M) by more than 10(4)-fold. His12 and His119 are proximal to the scissile phosphoryl group of an RNA substrate in enzyme-substrate complexes. Here, the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0100182

    authors: Park C,Schultz LW,Raines RT

    更新日期:2001-04-24 00:00:00

  • The crystal structure of the C-terminal truncated apolipoprotein A-I sheds new light on amyloid formation by the N-terminal fragment.

    abstract::Apolipoprotein A-I (apoA-I) is the main protein of plasma high-density lipoproteins (HDL, or good cholesterol) that remove excess cell cholesterol and protect against atherosclerosis. In hereditary amyloidosis, mutations in apoA-I promote its proteolysis and the deposition of the 9-11 kDa N-terminal fragments as fibri...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi2017014

    authors: Gursky O,Mei X,Atkinson D

    更新日期:2012-01-10 00:00:00

  • Rate constants in two dimensions of electron transfer between pyruvate oxidase, a membrane enzyme, and ubiquinone (coenzyme Q8), its water-insoluble electron carrier.

    abstract::The functionality of the membrane-bound, ubiquinone-dependent pyruvate oxidase from the respiratory chain of Escherichia coli was reconstituted with a supported lipidic structure. The artificial structure was especially designed to allow the electrochemical control of the quinone pool through the lateral mobility of t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi002325y

    authors: Marchal D,Pantigny J,Laval JM,Moiroux J,Bourdillon C

    更新日期:2001-02-06 00:00:00

  • Conversion of a group II intron into a new multiple-turnover ribozyme that selectively cleaves oligonucleotides: elucidation of reaction mechanism and structure/function relationships.

    abstract::The self-splicing ai5g group II intron was transformed into a three-part ribozyme that site-specifically cleaves small oligonucleotide substrates with multiple turnover. The ribozyme is composed of intron domain 1 (D1, 425 nucleotides), with catalytically essential domain 5 (D5, 58 nucleotides) provided separately as ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00009a028

    authors: Michels WJ Jr,Pyle AM

    更新日期:1995-03-07 00:00:00

  • Mutation at active site lysine 212 to arginine uncouples the glycosylase activity from the lyase activity of human endonuclease III.

    abstract::The human endonuclease III (hNTH1) is an important DNA glycosylase with associated abasic lyase activity. We previously demonstrated that the K212Q mutant was totally inactive, while the K212R mutant had reduced DNA glycosylase/lyase activity and could form a covalent complex with the substrate DNA upon reduction. We ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi011053b

    authors: Liu X,Roy R

    更新日期:2001-11-13 00:00:00

  • Faithful initiation of ribosomal RNA transcription from cloned DNA by purified RNA polymerase I.

    abstract::A faithful transcription system for ribosomal RNA genes has been developed by using components from the small free-living amoeba Acanthamoeba castellanii. The system utilizes protein-free recombinant DNA as a template and in addition requires a crude cell-free extract containing RNA polymerase I and a transcription in...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00313a025

    authors: Paule MR,Iida CT,Perna PJ,Harris GH,Brown Shimer SL,Kownin P

    更新日期:1984-08-28 00:00:00

  • The role of Sp1 family members, the proximal GC-rich motifs, and the upstream enhancer region in the regulation of the human cell cycle inhibitor p21WAF-1/Cip1 gene promoter.

    abstract::In the present study we establish that specific members of the Sp1 family of transcription factors (Sp1 and Sp3) bind to all six GC-rich motifs (elements 1-6) present in the proximal promoter of the human cell cycle inhibitor p21(WAF-1/Cip1) gene. Competition analysis showed that Sp1 and Sp3 bound with high affinity t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026141q

    authors: Koutsodontis G,Moustakas A,Kardassis D

    更新日期:2002-10-22 00:00:00

  • A metastable state of Torpedo californica acetylcholinesterase generated by modification with organomercurials.

    abstract::Chemical modification of Torpedo californica acetylcholinesterase by various sulfhydryl reagents results in its conversion to one of two principal states. One of these states, viz., that produced by disulfides and alkylating agents, is stable. The second state, produced by mercury derivatives, is metastable. At room t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00252a006

    authors: Kreimer DI,Dolginova EA,Raves M,Sussman JL,Silman I,Weiner L

    更新日期:1994-12-06 00:00:00

  • Effect of Cholesterol on the Interaction of Cytochrome P450 Substrate Drug Chlorzoxazone with the Phosphatidylcholine Bilayer.

    abstract::Many drugs are oxidized by membrane protein cytochrome P450 (CYP) enzymes during their metabolism process. CYPs are located mainly in endoplasmic reticulum (ER) membranes. Recent studies have suggested that CYP substrate drugs first bind the lipid bilayers of ER membranes and then the drugs reach the active site of CY...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00286

    authors: Yamada A,Shimizu N,Hikima T,Takata M,Kobayashi T,Takahashi H

    更新日期:2016-07-19 00:00:00

  • Kinetics of the initial steps of rabbit psoas myofibrillar ATPases studied by tryptophan and pyrene fluorescence stopped-flow and rapid flow-quench. Evidence that cross-bridge detachment is slower than ATP binding.

    abstract::The kinetics of the tryptophan fluorescence enhancement that occurs when myofibrils (rabbit psoas) are mixed with Mg-ATP were studied by stopped-flow in different solvents (water, 40% ethylene glycol, 20% methanol) at 4 degrees C. Under relaxing conditions (low Ca(2+)) in water (mu = 0.16 M, pH 7.4) and at high ATP co...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0004753

    authors: Stehle R,Lionne C,Travers F,Barman T

    更新日期:2000-06-27 00:00:00

  • Interfacial properties of the polyheme cytochrome c3 superfamily from Desulfovibrio.

    abstract::In order to compare the interfacial behavior of the polyheme cytochromes c which belong to the cytochrome c3 superfamily, the monomolecular film technique was used to determine whether and how these metalloproteins interact with (phospho)lipids). Measurements of the variations of surface pressure and surface potential...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00036a005

    authors: Florens L,Ivanova M,Dolla A,Czjzek M,Haser R,Verger R,Bruschi M

    更新日期:1995-09-12 00:00:00

  • Mechanistic studies with deuterated dihydroorotates on the dihydroorotate oxidase from Crithidia fasciculata.

    abstract::Deuterium-labeled dihydroorotates bearing one, two, or three deuteriums at the pair of C4 and C5 positions have been synthesized in high isotopic and chiral purity and characterized by NMR and mass spectroscopy. These substrates have been used with the FMN-containing biosynthetic dihydroorotate oxidase from Crithidia ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00307a033

    authors: Pascal RA Jr,Walsh CT

    更新日期:1984-06-05 00:00:00

  • Sequences of B-chain/domain 1-10/1-9 of insulin and insulin-like growth factor 1 determine their different folding behavior.

    abstract::Although insulin and insulin-like growth factor-1 (IGF-1) belong to one family, insulin folds into one thermodynamically stable structure, while IGF-1-folds into two thermodynamically stable structures (native and swap forms). We have demonstrated previously that the bifurcating folding behavior of IGF-1 is mainly con...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049710y

    authors: Chen Y,You Y,Jin R,Guo ZY,Feng YM

    更新日期:2004-07-20 00:00:00

  • Assessment of the number of free cysteines and isolation and identification of cystine-containing peptides from acetylcholine receptor.

    abstract::The number of free cysteines in each polypeptide of acetylcholine receptor from the electric organ of Torpedo californica has been assessed by alkylating the native protein with N-ethylmaleimide and iodoacetamide during homogenization of the tissue and alkylating the polypeptides with N-ethylmaleimide as they were unf...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00434a048

    authors: Kellaris KV,Ware DK,Smith S,Kyte J

    更新日期:1989-04-18 00:00:00

  • The conserved residues glutamate-37, aspartate-100, and arginine-269 are important for the structural stabilization of Escherichia coli aspartate transcarbamoylase.

    abstract::Aspartate transcarbamoylase from Escherichia coli is a dodecameric enzyme consisting of two trimeric catalytic subunits and three dimeric regulatory subunits. The X-ray structure of this enzyme indicates that the side chains of His-41, Asp-100, and Asp-90 from one catalytic chain form interactions with the side chains...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00089a034

    authors: Baker DP,Kantrowitz ER

    更新日期:1993-09-28 00:00:00

  • Characterization of the internal calcium(II) binding sites in dissolved insulin hexamer using europium(III) fluorescence.

    abstract::The fluorescence of Eu(III) is used to study the nature of the Ca(II) binding sites in the central cavity of the two-zinc(II) insulin hexamer. The dependence of the Eu(III) fluorescence lifetime upon Eu(III) stoichiometry indicates that there are three identical Eu(III) binding sites present in the two-zinc(II) insuli...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00328a028

    authors: Alameda GK,Evelhoch JL,Sudmeier JL,Birge RR

    更新日期:1985-03-26 00:00:00