Partial volume segmentation of brain magnetic resonance images based on maximum a posteriori probability.

Abstract:

:Noise, partial volume (PV) effect, and image-intensity inhomogeneity render a challenging task for segmentation of brain magnetic resonance (MR) images. Most of the current MR image segmentation methods focus on only one or two of the above-mentioned effects. The objective of this paper is to propose a unified framework, based on the maximum a posteriori probability principle, by taking all these effects into account simultaneously in order to improve image segmentation performance. Instead of labeling each image voxel with a unique tissue type, the percentage of each voxel belonging to different tissues, which we call a mixture, is considered to address the PV effect. A Markov random field model is used to describe the noise effect by considering the nearby spatial information of the tissue mixture. The inhomogeneity effect is modeled as a bias field characterized by a zero mean Gaussian prior probability. The well-known fuzzy C-mean model is extended to define the likelihood function of the observed image. This framework reduces theoretically, under some assumptions, to the adaptive fuzzy C-mean (AFCM) algorithm proposed by Pham and Prince. Digital phantom and real clinical MR images were used to test the proposed framework. Improved performance over the AFCM algorithm was observed in a clinical environment where the inhomogeneity, noise level, and PV effect are commonly encountered.

journal_name

Med Phys

journal_title

Medical physics

authors

Li X,Li L,Lu H,Liang Z

doi

10.1118/1.1944912

subject

Has Abstract

pub_date

2005-07-01 00:00:00

pages

2337-45

issue

7

eissn

0094-2405

issn

2473-4209

journal_volume

32

pub_type

杂志文章
  • Technical note: A novel boundary condition using contact elements for finite element based deformable image registration.

    abstract::Deformable image registration is an important tool for image-guided radiotherapy. Physics-model-based deformable image registration using finite element analysis is one of the methods currently being investigated. The calculation accuracy of finite element analysis is dependent on given boundary conditions, which are ...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.1774131

    authors: Zhang T,Orton NP,Mackie TR,Paliwal BR

    更新日期:2004-09-01 00:00:00

  • Automation of routine elements for spot-scanning proton patient-specific quality assurance.

    abstract:PURPOSE:At our institution, all proton patient plans undergo patient-specific quality assurance (PSQA) prior to treatment delivery. For intensity-modulated proton beam therapy, quality assurance is complex and time consuming, and it may involve multiple measurements per field. We reviewed our PSQA workflow and identifi...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.13246

    authors: Hernandez Morales D,Shan J,Liu W,Augustine KE,Bues M,Davis MJ,Fatyga M,Johnson JE,Mundy DW,Shen J,Younkin JE,Stoker JB

    更新日期:2019-01-01 00:00:00

  • Single shot MR tagging to quantify local tissue deformation during MRI-guided needle interventions: a feasibility study.

    abstract:PURPOSE:In MRI-guided needle interventions, such as biopsies and brachytherapy, tissue deformation caused by needle movement may result in localization errors and thus hamper the outcome of the procedure. Monitoring the local tissue deformation provides the ability to compensate for it, e.g., by increasing the needle i...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.3633906

    authors: van den Bosch MR,de Leeuw H,Zwanenburg JJ,Lagendijk JJ,Moerland MA

    更新日期:2011-10-01 00:00:00

  • L-curve analysis of radiotherapy optimization problems.

    abstract::We attempt to select an optimal value of regularization parameter in the optimization problems for intensity-modulated radiotherapy which are solved using a variational regularization technique. We apply to inverse treatment planning the L-curve method which was developed to determine the regularization parameter in t...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.1949750

    authors: Chvetsov AV

    更新日期:2005-08-01 00:00:00

  • Inspection of visible components in urine based on deep learning.

    abstract:PURPOSE:Urinary particles are particularly important parameters in clinical urinalysis, especially for the diagnosis of nephropathy. Therefore, it is highly important to precisely detect urinary particles in the clinical setting. However, artificial microscopy is subjective and time consuming, and various previous dete...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.14118

    authors: Li Q,Yu Z,Qi T,Zheng L,Qi S,He Z,Li S,Guan H

    更新日期:2020-07-01 00:00:00

  • Direct digitization of optical images using a photostimulable phosphor system.

    abstract::The authors describe a method for directly digitizing optical images with a photostimulable phosphor (PSP) system. A PSP plate is initially charged with an exposure to a uniform x-ray field, and is then exposed to an optical image which discharges the plate in relation to the amount of incident light. Two applications...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.596917

    authors: Dobbins JT 3rd,Chotas HG,Benveniste H

    更新日期:1992-07-01 00:00:00

  • Magnetic resonance spectroscopy.

    abstract::The nuclear magnetic resonance phenomenon has given rise to both magnetic resonance imaging, which yields morphologic data, and magnetic resonance spectroscopy (MRS), which yields chemical data. In humans these data are derived principally from the resonances of the hydrogen nucleus in the low molecular weight compoun...

    journal_title:Medical physics

    pub_type: 杂志文章,评审

    doi:10.1118/1.2975225

    authors: Prost RW

    更新日期:2008-10-01 00:00:00

  • Simplifying volumes-of-interest (VOIs) definition in quantitative SPECT: Beyond manual definition of 3D whole-organ VOIs.

    abstract:PURPOSE:We investigated the feasibility of using simpler methods than manual whole-organ volume-of-interest (VOI) definition to estimate the organ activity concentration in single photon emission computed tomography (SPECT) in cases where the activity in the organ can be assumed to be uniformly distributed on the scale...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.12164

    authors: Vicente EM,Lodge MA,Rowe SP,Wahl RL,Frey EC

    更新日期:2017-05-01 00:00:00

  • JADA: a graphical user interface for comprehensive internal dose assessment in nuclear medicine.

    abstract:PURPOSE:The main objective of this work was to design a comprehensive dosimetry package that would keep all aspects of internal dose calculation within the framework of a single software environment and that would be applicable for a variety of dose calculation approaches. METHODS:Our MATLAB-based graphical user inter...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.4810963

    authors: Grimes J,Uribe C,Celler A

    更新日期:2013-07-01 00:00:00

  • The influence of phantom size on output, peak scatter factor, and percentage depth dose in large-field photon irradiation.

    abstract::Machine outputs, peak scatter factors, and central axis percentage depth dose distributions were measured for various phantom sizes in large radiation fields produced at extended distances by cobalt, 6-MV, and 10-MV photon beams. The results can be applied to practical total body irradiation procedures which usually i...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.595686

    authors: Podgorsak EB,Pla C,Evans MD,Pla M

    更新日期:1985-09-01 00:00:00

  • Experimental assessment of microwave ablation computational modeling with MR thermometry.

    abstract:PURPOSE:Computational models are widely used during the design and characterization of microwave ablation (MWA) devices, and have been proposed for pretreatment planning. Our objective was to assess three-dimensional (3D) transient temperature and ablation profiles predicted by MWA computational models with temperature...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.14318

    authors: Faridi P,Keselman P,Fallahi H,Prakash P

    更新日期:2020-09-01 00:00:00

  • Computation of beam quality parameters for Mo/Mo, Mo/Rh, Rh/Rh, and W/Al target/filter combinations in mammography.

    abstract::A computer program was implemented to predict mammography x-ray beam parameters in the range 20-40 kV for Mo/Mo, Mo/Rh, Rh/Rh, and W/Al target/filter combinations. The computation method used to simulate mammography x-ray spectra is based on the Boone et al. model. The beam quality parameters such as the half-value la...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.1608498

    authors: Kharrati H,Zarrad B

    更新日期:2003-10-01 00:00:00

  • Monte Carlo simulations on the water-to-air stopping power ratio for carbon ion dosimetry.

    abstract::Many papers discussed the I value for water given by the ICRU, concluding that a value of about 80 +/- 2 eV instead of 67.2 eV would reproduce measured ion depth-dose curves. A change in the I value for water would have an effect on the stopping power and, hence, on the water-to-air stopping power ratio, which is impo...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.3085877

    authors: Henkner K,Bassler N,Sobolevsky N,Jäkel O

    更新日期:2009-04-01 00:00:00

  • Development of optical process for accessing three-dimensional patient topology.

    abstract::A commercial optical system developed by Solid Photography, Inc., has been used to generate precise paraffin--polyethylene tissue compensators. A program with the objective of constructing a medical facility has been undertaken to access patient topology for treatment planning, tissue-compensator fabrication, and pati...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.594447

    authors: Lerch IA,Barish RJ,Stern H

    更新日期:1978-11-01 00:00:00

  • High-speed photography during ultrasound illustrates potential therapeutic applications of microbubbles.

    abstract::Ultrasound contrast agents consist of microscopically small encapsulated bubbles that oscillate upon insonification. To enhance diagnostic ultrasound imaging techniques and to explore therapeutic applications, these medical microbubbles have been studied with the aid of high-speed photography. We filmed medical microb...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.2133718

    authors: Postema M,van Wamel A,ten Cate FJ,de Jong N

    更新日期:2005-12-01 00:00:00

  • Medical applications of shortwave FM radar: remote monitoring of cardiac and respiratory motion.

    abstract:PURPOSE:This article introduces the use of low power continuous wave frequency modulated radar for medical applications, specifically for remote monitoring of vital signs in patients. METHODS:Gigahertz frequency radar measures the electromagnetic wave signal reflected from the surface of a human body and from tissue b...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.3267038

    authors: Mostov K,Liptsen E,Boutchko R

    更新日期:2010-03-01 00:00:00

  • Energy spectrum based calculation of the half and the tenth value layers for brachytherapy sources using a semiempirical parametrized mass attenuation coefficient formulism.

    abstract::As different types of radionuclides (e.g., 131Cs source) are introduced for clinical use in brachytherapy, the question is raised regarding whether a relatively simple method exists for the derivation of values of the half value layer (HVL) or the tenth value layer (TVL). For the radionuclide that has been clinically ...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.2905356

    authors: Yue NJ

    更新日期:2008-06-01 00:00:00

  • Poster - Thur Eve - 77: Coordinate transformation from DICOM to DOSXYZnrc.

    abstract::DICOM format is the de facto standard for communications between therapeutic and diagnostic modalities. A plan generated by a treatment planning system (TPS) is often exported to DICOM format. BEAMnrc/DOSXYZnrc is a widely used Monte Carlo (MC) package for beam and dose simulations in radiotherapy. It has its own defi...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.4740186

    authors: Zhan L,Jiang R,Osei EK

    更新日期:2012-07-01 00:00:00

  • A dosimetry study of the Oncoseed 6711 using glass rod dosimeters and EGS5 Monte Carlo code in a geometry lacking radiation equilibrium scatter conditions.

    abstract:PURPOSE:The aim of this study was to develop a dose calculation method which is applicable to the interseed attenuation and the geometry lacking the equilibrium radiation scatter conditions in brachytherapy. METHODS:The dose obtained from measurement with a radiophotoluminescent glass rod dosimeter (GRD) was compared ...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.3590370

    authors: Tanaka K,Tateoka K,Asanuma O,Kamo K,Bengua G,Sato K,Ueda T,Takeda H,Takagi M,Hareyama M,Takada J

    更新日期:2011-06-01 00:00:00

  • Ultrasonic Nakagami-parameter characterization of parotid-gland injury following head-and-neck radiotherapy: a feasibility study of late toxicity.

    abstract:PURPOSE:The study aims to investigate whether Nakagami parameters--estimated from the statistical distribution of the backscattered ultrasound radio-frequency (RF) signals--could provide a means for quantitative characterization of parotid-gland injury resulting from head-and-neck radiotherapy. METHODS:A preliminary c...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.4862507

    authors: Yang X,Tridandapani S,Beitler JJ,Yu DS,Wu N,Wang Y,Bruner DW,Curran WJ,Liu T

    更新日期:2014-02-01 00:00:00

  • Investigating energy deposition in glandular tissues for mammography using multiscale Monte Carlo simulations.

    abstract:PURPOSE:To investigate energy deposition in glandular tissues of the breast on macro- and microscopic length scales in the context of mammography. METHODS:Multiscale mammography models of breasts are developed, which include segmented, voxelized macroscopic tissue structure as well as nine regions of interest (ROIs) e...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.13372

    authors: Oliver PAK,Thomson RM

    更新日期:2019-03-01 00:00:00

  • Technical Note: Imaging dose resulting from optimized procedures with limited-angle intrafractional verification system during stereotactic body radiation therapy lung treatment.

    abstract:PURPOSE:The limited-angle intrafractional verification (LIVE) system was developed to track tumor movement during stereotactic body radiation therapy (SBRT). However, the four-dimensional (4D) MV/kV imaging procedure results in additional radiation dose to patients. This study is to quantify imaging radiation dose from...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.13511

    authors: Ding GX,Zhang Y,Ren L

    更新日期:2019-06-01 00:00:00

  • Penetration quality measurement for standardization of radiographic image quality.

    abstract::Interchange or transfer of radiographic techniques through measurement of penetration quality is discussed. The usefulness of this achievement is verified using an aluminum step wedge. Also, the procedure described provides a method for performance evaluation of kVp compensation on diagnostic x-ray installations. ...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.594156

    authors: Lin PJ

    更新日期:1975-01-01 00:00:00

  • Ultrasound viscoelasticity assessment using an adaptive torsional shear wave propagation method.

    abstract:PURPOSE:Different approaches have been used in dynamic elastography to assess mechanical properties of biological tissues. Most techniques are based on a simple inversion based on the measurement of the shear wave speed to assess elasticity, whereas some recent strategies use more elaborated analytical or finite elemen...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.4942813

    authors: Ouared A,Kazemirad S,Montagnon E,Cloutier G

    更新日期:2016-04-01 00:00:00

  • Development and validation of a CT-3D rotational angiography registration method for AVM radiosurgery.

    abstract::In this paper a novel technique is proposed and validated for radiosurgery treatment planning of arteriovenous malformations (AVMs). The technique was developed for frameless radiosurgery by means of the CyberKnife, a nonisocentric, linac-based system which allows highly conformed isodose surfaces to be obtained, whil...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.1751252

    authors: Stancanello J,Cavedon C,Francescon P,Cerveri P,Ferrigno G,Colombo F,Perini S

    更新日期:2004-06-01 00:00:00

  • Mineralization in calcified plaque is like that of cortical bone--further evidence from ultrashort echo time (UTE) magnetic resonance imaging of carotid plaque calcification and cortical bone.

    abstract:PURPOSE:This study aims to investigate carotid plaque calcification (CPC) using two-dimensional (2D) and 3D ultrashort echo time (UTE) magnetic resonance imaging (MRI) sequences and compare T1, T2*, water concentration, and bone mineral density (BMD) of CPC with those of cortical bone. METHODS:Twelve carotid plaque sp...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.4819944

    authors: Du J,Peterson M,Kansal N,Bydder GM,Kahn A

    更新日期:2013-10-01 00:00:00

  • Principles in positioning cross-projecting lasers.

    abstract::With the increased sophistication of lasers used for patient positioning in radiotherapy comes increased possibilities for mistakes in installing the lasers, which can result in serious patient positioning errors. Two principles must be followed when mounting cross-projecting lasers: (1) the horizontal line must be on...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.594960

    authors: Thomadsen BR

    更新日期:1981-05-01 00:00:00

  • Correcting TG 119 confidence limits.

    abstract:PURPOSE:Task Group 119 (TG-119) has been adopted for evaluating the adequacy of intensity-modulated radiation therapy (IMRT) commissioning and for establishing patient-specific IMRT quality assurance (QA) passing criteria in clinical practice. TG-119 establishes 95% confidence limits (CLs), which help clinics identify ...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1002/mp.12759

    authors: Kearney V,Solberg T,Jensen S,Cheung J,Chuang C,Valdes G

    更新日期:2018-03-01 00:00:00

  • The tracks of the Compton effect.

    abstract::The observation of scattered radiations of larger wavelength than the primary had been repeatedly rejected or explained away by many researchers, including Compton. After years of vacillations, he recognized the effect named after him and was the first to develop a quantal equation predicting the wavelength of scatter...

    journal_title:Medical physics

    pub_type: 传,历史文章,杂志文章

    doi:10.1118/1.595046

    authors: del Regato JA

    更新日期:1981-11-01 00:00:00

  • Performance characteristics of A 150 plastic-equivalent gases in A 150 plastic proportional counters for 14.8-MeV neutrons.

    abstract::Two recently developed A 150 plastic-equivalent gas mixtures have been tested for suitability in proportional counter applications. Methane- and propane-based "tissue-equivalent" gases were also included for comparison purposes. Event-size weighted dose distributions were measured in a 14.8-MeV neutron beam. Resolutio...

    journal_title:Medical physics

    pub_type: 杂志文章

    doi:10.1118/1.595536

    authors: DeLuca PM Jr,Schell MC,Pearson DW,Higgins PD,Attix FH

    更新日期:1984-07-01 00:00:00