N-(5-Phosphoribosyl)anthranilate isomerase-indoleglycerol-phosphate synthase. 2. Fast-reaction studies show that a fluorescent substrate analogue binds independently to two different sites.

Abstract:

:The mechanism of binding of reduced 1-(2-carboxyphenylamino)-1-deoxyribulose 5-phosphate (rCdRP) to two different binding sites on the bifunctional enzyme is determined by kinetic studies, using temperature-jump and stopped-flow equipment with fluorescence detection. Two rapid binding processes and a comparatively slow isomerization process are observed over a wide range of enzyme and rCdRP concentrations. Kinetic measurements with low concentrations of rCdRP show that the isomerization is coupled only to the more rapid of the two binding reactions that involves the active site of indoleglycerol-phosphate synthase. The slower of the two binding reactions represents rCdRP binding in one step to the active site of (phosphoribosyl)anthranilate isomerase. The simplest mechanism explaining quantitatively the dependence of the relaxation times on concentration consists of rCdRP binding to two sites on the enzyme that are intrinsically different and independent, even to the extent that a ligand-induced isomerization of one site is not transmitted to the other site. Simulation studies show that the concentration dependences of the amplitudes of the three relaxation processes are also consistent with the mechanism. The results are discussed in terms of two autonomous domains of folding of the polypeptide chain.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Cohn W,Kirschner K,Paul C

doi

10.1021/bi00593a030

subject

Has Abstract

pub_date

1979-12-25 00:00:00

pages

5953-9

issue

26

eissn

0006-2960

issn

1520-4995

journal_volume

18

pub_type

杂志文章
  • Engineering protein stability and specificity using fluorous amino acids: the importance of packing effects.

    abstract::The incorporation of extensively fluorinated, or fluorous, analogues of hydrophobic amino acids into proteins potentially provides the opportunity to modulate the physicochemical properties of proteins in a predictable manner. On the basis of the properties of small fluorocarbon molecules, extensively fluorinated prot...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901481k

    authors: Buer BC,de la Salud-Bea R,Al Hashimi HM,Marsh EN

    更新日期:2009-11-17 00:00:00

  • New class of bacterial membrane oxidoreductases.

    abstract::A new class of bacterial multisubunit membrane-bound electron-transfer complexes has been identified based on biochemical and bioinformatic data. It contains subunits homologous to the three-subunit molybdopterin oxidoreductases and four additional subunits, two of which are c-type cytochromes. The complex was purifie...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi047267l

    authors: Yanyushin MF,del Rosario MC,Brune DC,Blankenship RE

    更新日期:2005-08-02 00:00:00

  • Activity-dependent phosphorylation of dynamin 1 at serine 857.

    abstract::Dynamin 1 is thought to mediate synaptic transmission through interactions with multiple endocytic accessory proteins in a phosphorylation-dependent manner. Previously, we have shown that DYRK1A, a chromosome 21-encoded kinase implicated in the mental retardation of Down syndrome, phosphorylates primarily serine 857 (...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi2017798

    authors: Xie W,Adayev T,Zhu H,Wegiel J,Wieraszko A,Hwang YW

    更新日期:2012-08-28 00:00:00

  • Formation of monomeric S100B and S100A11 proteins at low ionic strength.

    abstract::The S100 proteins comprise a group of EF-hand proteins that undergo a calcium-induced conformational change allowing them to interact with other proteins and produce a biological response. A unique feature of these proteins is the fact that they can form both homo- and heterodimers independent of calcium binding. The ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi802086a

    authors: Marlatt NM,Boys BL,Konermann L,Shaw GS

    更新日期:2009-03-10 00:00:00

  • Single-turnover kinetics of helicase-catalyzed DNA unwinding monitored continuously by fluorescence energy transfer.

    abstract::We describe a fluorescence assay that can be used to monitor helicase-catalyzed unwinding of duplex DNA continuously in real time. The assay is based on the observation that fluorescence resonance energy transfer (FRET) occurs between donor (fluorescein) and acceptor (hexachlorofluorescein) fluorophores that are in cl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00251a044

    authors: Bjornson KP,Amaratunga M,Moore KJ,Lohman TM

    更新日期:1994-11-29 00:00:00

  • Molecular mechanism of action of β-hairpin antimicrobial peptide arenicin: oligomeric structure in dodecylphosphocholine micelles and pore formation in planar lipid bilayers.

    abstract::The membrane-active, cationic, β-hairpin peptide, arenicin, isolated from marine polychaeta Arenicola marina exhibits a broad spectrum of antimicrobial activity. The peptide in aqueous solution adopts the significantly twisted β-hairpin conformation without pronounced amphipathicity. To assess the mechanism of arenici...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200746t

    authors: Shenkarev ZO,Balandin SV,Trunov KI,Paramonov AS,Sukhanov SV,Barsukov LI,Arseniev AS,Ovchinnikova TV

    更新日期:2011-07-19 00:00:00

  • Intramolecular proton transfer from multiple sites in catalysis by murine carbonic anhydrase V.

    abstract::The hydration of CO2 catalyzed by carbonic anhydrase requires proton transfer from the zinc-bound water at the active site to solution for each cycle of catalysis. In the most efficient of the mammalian carbonic anhydrases, isozyme II, this transfer is facilitated by a proton shuttle residue, His 64. Murine carbonic a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9729209

    authors: Earnhardt JN,Qian M,Tu C,Laipis PJ,Silverman DN

    更新日期:1998-05-19 00:00:00

  • DNA sequencing of the seven remaining structural genes of the gene cluster encoding the energy-transducing NADH-quinone oxidoreductase of Paracoccus denitrificans.

    abstract::In our previous papers, seven structural genes (NQO1-7) of the energy-transducing NADH-quinone (Q) oxidoreductase of Paracoccus denitrificans were characterized [Xu, X., Matsuno-Yagi, A., & Yagi, T. (1991a) Biochemistry 30, 8678-8684; (1991b) Biochemistry 30, 6422-6428; (1992a) Biochemistry 31, 6925-6932; (1992b) Arch...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00054a030

    authors: Xu X,Matsuno-Yagi A,Yagi T

    更新日期:1993-01-26 00:00:00

  • Physical basis of the effect of hemoglobin on the 31P NMR chemical shifts of various phosphoryl compounds.

    abstract::The marked difference between the intra- and extracellular 31P NMR chemical shifts of various phosphoryl compounds when added to a red cell suspension may be largely understood in terms of the effects of hemoglobin on the 31P NMR chemical shifts. The presence of [oxy- or (carbonmonoxy)-] hemoglobin inside the red cell...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00424a017

    authors: Kirk K,Kuchel PW

    更新日期:1988-11-29 00:00:00

  • Fourier-transform infrared spectroscopy of phytochrome: difference spectra of the intermediates of the photoreactions.

    abstract::The photocycle of 124 kDa phytochrome A from Avena sativa was studied by Fourier-transform infrared spectroscopy at low temperatures. Difference spectra between the parent state Pr and the intermediates of the Pr-->Pfr pathway, i.e. lumi-R, meta-Ra, and meta-Rc, and between Pfr and the intermediates of the Pfr-->Pr pa...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi960960r

    authors: Foerstendorf H,Mummert E,Schäfer E,Scheer H,Siebert F

    更新日期:1996-08-20 00:00:00

  • Location of the catalytic site for phosphoenolpyruvate formation within the primary structure of Clostridium symbiosum pyruvate phosphate dikinase. 2. Site-directed mutagenesis of an essential arginine contained within an apparent P-loop.

    abstract::Pyruvate phosphate dikinase catalyzes the interconversion of adenosine 5'-triphosphate (ATP), orthophosphate (P(i)), and pyruvate with adenosine 5'-monophosphate (AMP), pyrophosphate (PP(i)), and phosphoenolpyruvate (PEP). The Arg 561 residue of Clostridium symbiosum PPDK is contained within a Gly-rich stretch of sequ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00007a012

    authors: Yankie L,Xu Y,Dunaway-Mariano D

    更新日期:1995-02-21 00:00:00

  • Determination of the rate-limiting steps for malic enzyme by the use of isotope effects and other kinetic studies.

    abstract::Isotope effects have been measured with Mg2+ as the activator and L-malate labeled with deuterium or tritium at carbon 2 as the substrate over the pH range 4-10. Comparison of the nearly pH-independent deuterium-isotope effect on V/Kmalate of 1.5 with the tritium effect of 2.0 by the method of Northrop (Northrop, D.B....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00623a002

    authors: Schimerlik MI,Grimshaw CE,Cleland WW

    更新日期:1977-02-22 00:00:00

  • 2D NMR studies of aminoglycoside antibiotics. Use of relayed coherence transfer for 1H resonance assignment and in situ structure elucidation of amikacin derivatives in reaction mixtures.

    abstract::Phase-sensitive 2D 1H/1H COSY spectra can be used to identify the structures of individual pure specimens of the aminoglycoside antibiotic amikacin and its N-hemisuccinyl derivatives. However, even at 500 MHz the 2D chemical shift dispersion does not allow for unambiguous assignment of all cross-peaks. By use of 2D re...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00408a019

    authors: Andersen NH,Eaton HL,Nguyen KT,Hartzell C,Nelson RJ,Priest JH

    更新日期:1988-04-19 00:00:00

  • Predominant interactions between mu-conotoxin Arg-13 and the skeletal muscle Na+ channel localized by mutant cycle analysis.

    abstract::High-affinity mu-conotoxin block of skeletal muscle Na+ channels depends on an arginine at position 13 (Arg-13). To understand both the mechanism of toxin interaction and the general structure of its binding site in the channel mouth, we examined by thermodynamic mutant cycle analysis the interaction between the criti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9724927

    authors: Chang NS,French RJ,Lipkind GM,Fozzard HA,Dudley S Jr

    更新日期:1998-03-31 00:00:00

  • Nuclear deoxyribonucleic acid characterization of the marine chromophyte Olisthodiscus luteus.

    abstract::Nuclear DNA of the marine chromophytic alga Olisthodiscus luteus was analyzed in this study. Reassociation kinetics analysis has shown that 440-nucleotide DNA fragments from the genome of this alga contain 4% foldback, 58% repetitive, and 34% single-copy sequences. Precise analysis using isolated single-copy DNA revea...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00527a023

    authors: Ersland DR,Cattolico RA

    更新日期:1981-11-24 00:00:00

  • Multiple forms of phosphodeoxyribomutase from Escherichia coli. Physical and chemical characterization.

    abstract::Phosphodeoxyribomutase from Escherichia coli has been purified to homogeneity. Chromatography on DEAE-Sephadex revealed three peaks of enzyme activity, designated form I, form II, and form III. Form III could be further separated into form III-1 and form III-2 by polyacrylamide gel electrophoresis. The four different ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00674a021

    authors: Leer JC,Hammer-Jespersen K

    更新日期:1975-02-11 00:00:00

  • Differential susceptibility of transferrin glycoforms to chymotrypsin: a proteomics approach to the detection of carbohydrate-deficient transferrin.

    abstract::Transferrin exhibits heterogeneity in glycosylation characteristic of pathological changes in alcohol abuse and congenital disorders in glycosylation. This study investigated an alternative approach in the detection of carbohydrate-deficient transferrin based on the premise that glycosylation may afford some degree of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051749v

    authors: Valmu L,Kalkkinen N,Husa A,Rye PD

    更新日期:2005-12-13 00:00:00

  • Evaluation of copper2+ affinities for the prion protein.

    abstract::The prion protein (PrP) is a cell-surface Cu2+ binding glycoprotein which can bind six copper ions. The role of Cu2+ in PrP function, misfolding, and prion disease has generated much interest; however, the field has been hampered by a lack of consensus with regard to the affinity of Cu2+ for PrPC. Here we build on our...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9011397

    authors: Nadal RC,Davies P,Brown DR,Viles JH

    更新日期:2009-09-29 00:00:00

  • Cloning and expression of three rabbit kidney cDNAs encoding lauric acid omega-hydroxylases.

    abstract::cDNAs encoding three cytochrome P-450 enzymes were cloned from a rabbit kidney cDNA library. These three cDNAs exhibit greater than 90% nucleotide sequence identity across the coding region. This degree of sequence identity is also seen with P450IVA4, an enzyme that catalyzes the omega-hydroxylation of prostaglandins ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00456a004

    authors: Johnson EF,Walker DL,Griffin KJ,Clark JE,Okita RT,Muerhoff AS,Masters BS

    更新日期:1990-01-30 00:00:00

  • Catalytic reaction profile for alcohol oxidation by galactose oxidase.

    abstract::Galactose oxidase is a remarkable enzyme containing a metalloradical redox cofactor capable of oxidizing a variety of primary alcohols during enzyme turnover. Recent studies using 1-O-methyl alpha-D-galactopyranoside have revealed an unusually large kinetic isotope effect (KIE) for oxidation of the alpha-deuterated al...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010303l

    authors: Whittaker MM,Whittaker JW

    更新日期:2001-06-19 00:00:00

  • Specific binding of ATP to extracellular sites on Torpedo acetylcholine receptor.

    abstract::The beta- and delta-subunits of the nicotinic acetylcholine receptor from Torpedo californica were covalently photolabeled at the synaptic surface with the ATP photoaffinity analogue [alpha-32P]-8-azido-ATP. The specificity of labeling for nucleotide binding sites was demonstrated by the saturation of labeling with in...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00080a002

    authors: Carlson BJ,Raftery MA

    更新日期:1993-07-27 00:00:00

  • β-propeller phytase hydrolyzes insoluble Ca(2+)-phytate salts and completely abrogates the ability of phytate to chelate metal ions.

    abstract::Phytate is an antinutritional factor that influences the bioavailability of essential minerals by forming complexes with them and converting them into insoluble salts. To further our understanding of the chemistry of phytate's binding interactions with biologically important metal cations, we determined the stoichiome...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi1010249

    authors: Kim OH,Kim YO,Shim JH,Jung YS,Jung WJ,Choi WC,Lee H,Lee SJ,Kim KK,Auh JH,Kim H,Kim JW,Oh TK,Oh BC

    更新日期:2010-11-30 00:00:00

  • Structures of gangliosides from bovine adrenal medulla.

    abstract::Five gangliosides, accounting for over 95% of the total ganglioside fraction, were isolated from bovine adrenal medulla by preparative thin-layer chromatography and the carbohydrate structures determined by a combination of periodate oxidation and permethylation techniques. Partially methylated alditol acetates were g...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00678a026

    authors: Price H,Kundu S,Ledeen R

    更新日期:1975-04-08 00:00:00

  • Homogeneity and variability in the structure of azurin molecules studied by fluorescence decay and circular polarization.

    abstract::The fluorescence decay of apoazurin derived from Pseudomonas aeruginosa is monoexponential. By this criterion the population of molecules of apoazurin is homogeneous. The emission anisotropy factor and the absorption anisotropy factor at the red edge of the absorption band assume similar values, showing that the trypt...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00680a018

    authors: Grinvald A,Schlessinger J,Pecht I,Steinberg IZ

    更新日期:1975-05-06 00:00:00

  • Stability effects of increasing the hydrophobicity of solvent-exposed side chains in staphylococcal nuclease.

    abstract::A total of fifty single site surface phenylalanine substitution mutants have been made in the model protein staphylococcal nuclease. The fifty residues that were replaced with phenylalanine were chosen to give a broad sampling of solvent accessibility, secondary structure, and backbone conformations. The change in the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9725069

    authors: Schwehm JM,Kristyanne ES,Biggers CC,Stites WE

    更新日期:1998-05-12 00:00:00

  • Linkage between operator binding and dimer to octamer self-assembly of bacteriophage lambda cI repressor.

    abstract::Cooperative binding of the bacteriophage lambda cI repressor dimer to specific sites of the phage operators OR and OL controls the developmental state of the phage. Cooperativity has long been thought to be mediated by self-assembly of repressor dimers to form tetramers which can bind simultaneously to adjacent operat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi971368k

    authors: Rusinova E,Ross JB,Laue TM,Sowers LC,Senear DF

    更新日期:1997-10-21 00:00:00

  • Revealing the allosterome: systematic identification of metabolite-protein interactions.

    abstract::Small molecule allostery modifies protein function but is not easily discovered. We introduce mass spectrometry integrated with equilibrium dialysis for the discovery of allostery systematically (MIDAS), a method for identifying physiologically relevant, low-affinity metabolite-protein interactions using unmodified pr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201313s

    authors: Orsak T,Smith TL,Eckert D,Lindsley JE,Borges CR,Rutter J

    更新日期:2012-01-10 00:00:00

  • Ubiquitinated proteasome inhibitor is a component of the 26 S proteasome complex.

    abstract::Western blot analysis, using a polyclonal antibody to the 240-kDa endogenous inhibitor of the 20 S proteasome, revealed that the inhibitor is a component of the 26 S complex. Although isolated inhibitor displayed a single 40-kDa band on SDS-PAGE, the antibody detected a 55-kDa component in the 26 S proteasome complex....

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00163a001

    authors: Li XS,Etlinger JD

    更新日期:1992-12-08 00:00:00

  • Expression of cytochrome P-450 and albumin genes in rat liver: effect of xenobiotics.

    abstract::Thioacetamide, a hepatocarcinogen and an inhibitor of heme synthesis, blocks the phenobarbitone-mediated increase in the transcription of cytochrome P-450b+e messenger RNA in rat liver. This property is also shared by CoCl2 and 3-amino-1,2,4-triazole, two other inhibitors of heme synthesis. Thus, it appears feasible t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00364a009

    authors: Satyabhama S,Seelan RS,Padmanaban G

    更新日期:1986-08-12 00:00:00

  • Double-strand break formation during nucleotide excision repair of a DNA interstrand cross-link.

    abstract::The DNA interstrand cross-link (ICL) resulting from the C4'-oxidized abasic site (C4-AP) is a unique clustered lesion comprised of a cross-link adjacent to a nick. The ICL is a substrate for the UvrABC nucleotide excision repair system. The strand containing the nick is preferentially incised, but the nick influences ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901006b

    authors: Sczepanski JT,Jacobs AC,Van Houten B,Greenberg MM

    更新日期:2009-08-18 00:00:00