Automated size-specific dose estimates using deep learning image processing.

Abstract:

:An automated vendor-independent system for dose monitoring in computed tomography (CT) medical examinations involving ionizing radiation is presented in this paper. The system provides precise size-specific dose estimates (SSDE) following the American Association of Physicists in Medicine regulations. Our dose management can operate on incomplete DICOM header metadata by retrieving necessary information from the dose report image by using optical character recognition. For the determination of the patient's effective diameter and water equivalent diameter, a convolutional neural network is employed for the semantic segmentation of the body area in axial CT slices. Validation experiments for the assessment of the SSDE determination and subsequent stages of our methodology involved a total of 335 CT series (60 352 images) from both public databases and our clinical data. We obtained the mean body area segmentation accuracy of 0.9955 and Jaccard index of 0.9752, yielding a slice-wise mean absolute error of effective diameter below 2 mm and water equivalent diameter at 1 mm, both below 1%. Three modes of the SSDE determination approach were investigated and compared to the results provided by the commercial system GE DoseWatch in three different body region categories: head, chest, and abdomen. Statistical analysis was employed to point out some significant remarks, especially in the head category.

journal_name

Med Image Anal

journal_title

Medical image analysis

authors

Juszczyk J,Badura P,Czajkowska J,Wijata A,Andrzejewski J,Bozek P,Smolinski M,Biesok M,Sage A,Rudzki M,Wieclawek W

doi

10.1016/j.media.2020.101898

subject

Has Abstract

pub_date

2021-02-01 00:00:00

pages

101898

eissn

1361-8415

issn

1361-8423

pii

S1361-8415(20)30262-0

journal_volume

68

pub_type

杂志文章
  • Comparison of atlas-based techniques for whole-body bone segmentation.

    abstract::We evaluate the accuracy of whole-body bone extraction from whole-body MR images using a number of atlas-based segmentation methods. The motivation behind this work is to find the most promising approach for the purpose of MRI-guided derivation of PET attenuation maps in whole-body PET/MRI. To this end, a variety of a...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2016.11.003

    authors: Arabi H,Zaidi H

    更新日期:2017-02-01 00:00:00

  • A novel deformation method for fast simulation of biological tissue formed by fibers and fluid.

    abstract::This paper presents a new approach to the simulation of soft tissues deformation suitable for real time computation, particularly intriguing for medical applications. The approach implements a quasi-static solution for elastic global deformations of objects filled with fluid and fibers, which can be a good approximati...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2012.04.002

    authors: Costa IF

    更新日期:2012-07-01 00:00:00

  • Automatic detection of over 100 anatomical landmarks in medical CT images: A framework with independent detectors and combinatorial optimization.

    abstract::An automatic detection method for 197 anatomically defined landmarks in computed tomography (CT) volumes is presented. The proposed method can handle missed landmarks caused by detection failure, a limited imaging range and other problems using a novel combinatorial optimization framework with a two-stage sampling alg...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2016.04.001

    authors: Hanaoka S,Shimizu A,Nemoto M,Nomura Y,Miki S,Yoshikawa T,Hayashi N,Ohtomo K,Masutani Y

    更新日期:2017-01-01 00:00:00

  • Sequential conditional reinforcement learning for simultaneous vertebral body detection and segmentation with modeling the spine anatomy.

    abstract::Accurate vertebral body (VB) detection and segmentation are critical for spine disease identification and diagnosis. Existing automatic VB detection and segmentation methods may cause false-positive results to the background tissue or inaccurate results to the desirable VB. Because they usually cannot take both the gl...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2020.101861

    authors: Zhang D,Chen B,Li S

    更新日期:2021-01-01 00:00:00

  • Unmixing dynamic PET images with variable specific binding kinetics.

    abstract::To analyze dynamic positron emission tomography (PET) images, various generic multivariate data analysis techniques have been considered in the literature, such as principal component analysis (PCA), independent component analysis (ICA), factor analysis and nonnegative matrix factorization (NMF). Nevertheless, these c...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2018.07.011

    authors: Cavalcanti YC,Oberlin T,Dobigeon N,Stute S,Ribeiro M,Tauber C

    更新日期:2018-10-01 00:00:00

  • Segmentation of lumen and outer wall of abdominal aortic aneurysms from 3D black-blood MRI with a registration based geodesic active contour model.

    abstract::Segmentation of the geometric morphology of abdominal aortic aneurysm is important for interventional planning. However, the segmentation of both the lumen and the outer wall of aneurysm in magnetic resonance (MR) image remains challenging. This study proposes a registration based segmentation methodology for efficien...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2017.05.005

    authors: Wang Y,Seguro F,Kao E,Zhang Y,Faraji F,Zhu C,Haraldsson H,Hope M,Saloner D,Liu J

    更新日期:2017-08-01 00:00:00

  • An accurate, fast and robust method to generate patient-specific cubic Hermite meshes.

    abstract::In-silico continuum simulations of organ and tissue scale physiology often require a discretisation or mesh of the solution domain. Cubic Hermite meshes provide a smooth representation of anatomy that is well-suited for simulating large deformation mechanics. Models of organ mechanics and deformation have demonstrated...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2011.06.010

    authors: Lamata P,Niederer S,Nordsletten D,Barber DC,Roy I,Hose DR,Smith N

    更新日期:2011-12-01 00:00:00

  • A deep network for tissue microstructure estimation using modified LSTM units.

    abstract::Diffusion magnetic resonance imaging (dMRI) offers a unique tool for noninvasively assessing tissue microstructure. However, accurate estimation of tissue microstructure described by complicated signal models can be challenging when a reduced number of diffusion gradients are used. Deep learning based microstructure e...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.04.006

    authors: Ye C,Li X,Chen J

    更新日期:2019-07-01 00:00:00

  • Regularized siamese neural network for unsupervised outlier detection on brain multiparametric magnetic resonance imaging: Application to epilepsy lesion screening.

    abstract::In this study, we propose a novel anomaly detection model targeting subtle brain lesions in multiparametric MRI. To compensate for the lack of annotated data adequately sampling the heterogeneity of such pathologies, we cast this problem as an outlier detection problem and introduce a novel configuration of unsupervis...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.101618

    authors: Alaverdyan Z,Jung J,Bouet R,Lartizien C

    更新日期:2020-02-01 00:00:00

  • A gradient-based optical-flow cardiac motion estimation method for cine and tagged MR images.

    abstract::A new method is proposed to quantify the myocardial motion from both 2D C(ine)-MRI and T(agged)-MRI sequences. The tag pattern offers natural landmarks within the image that makes it possible to accurately quantify the motion within the myocardial wall. Therefore, several methods have been proposed for T-MRI. However,...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.06.016

    authors: Wang L,Clarysse P,Liu Z,Gao B,Liu W,Croisille P,Delachartre P

    更新日期:2019-10-01 00:00:00

  • Understanding the phase contrast optics to restore artifact-free microscopy images for segmentation.

    abstract::Phase contrast, a noninvasive microscopy imaging technique, is widely used to capture time-lapse images to monitor the behavior of transparent cells without staining or altering them. Due to the optical principle, phase contrast microscopy images contain artifacts such as the halo and shade-off that hinder image segme...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2011.12.006

    authors: Yin Z,Kanade T,Chen M

    更新日期:2012-07-01 00:00:00

  • Pseudo-healthy synthesis with pathology disentanglement and adversarial learning.

    abstract::Pseudo-healthy synthesis is the task of creating a subject-specific 'healthy' image from a pathological one. Such images can be helpful in tasks such as anomaly detection and understanding changes induced by pathology and disease. In this paper, we present a model that is encouraged to disentangle the information of p...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2020.101719

    authors: Xia T,Chartsias A,Tsaftaris SA

    更新日期:2020-08-01 00:00:00

  • Computerized detection of pulmonary nodules in chest radiographs based on morphological features and wavelet snake model.

    abstract::We have developed a new computer-aided diagnosis scheme for automated detection of lung nodules in digital chest radiographs based on a combination of morphological features and the wavelet snake. In our scheme, two processes were applied in parallel to reduce the false-positive detections after initial nodule candida...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/s1361-8415(02)00064-6

    authors: Keserci B,Yoshida H

    更新日期:2002-12-01 00:00:00

  • A spatiotemporal statistical atlas of motion for the quantification of abnormal myocardial tissue velocities.

    abstract::In this paper, we present a new method for the automatic comparison of myocardial motion patterns and the characterization of their degree of abnormality, based on a statistical atlas of motion built from a reference healthy population. Our main contribution is the computation of atlas-based indexes that quantify the ...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2010.12.006

    authors: Duchateau N,De Craene M,Piella G,Silva E,Doltra A,Sitges M,Bijnens BH,Frangi AF

    更新日期:2011-06-01 00:00:00

  • An efficient Riemannian statistical shape model using differential coordinates: With application to the classification of data from the Osteoarthritis Initiative.

    abstract::We propose a novel Riemannian framework for statistical analysis of shapes that is able to account for the nonlinearity in shape variation. By adopting a physical perspective, we introduce a differential representation that puts the local geometric variability into focus. We model these differential coordinates as ele...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2017.09.004

    authors: von Tycowicz C,Ambellan F,Mukhopadhyay A,Zachow S

    更新日期:2018-01-01 00:00:00

  • Computer aided diagnosis of thyroid nodules based on the devised small-datasets multi-view ensemble learning.

    abstract::With the development of deep learning, its application in diagnosis of benign and malignant thyroid nodules has been widely concerned. However, it is difficult to obtain medical images, resulting in insufficient number of data, which contradicts the large amount of data required for acquiring effective deep learning d...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2020.101819

    authors: Chen Y,Li D,Zhang X,Jin J,Shen Y

    更新日期:2021-01-01 00:00:00

  • Automated preoperative planning of femoral stem in total hip arthroplasty from 3D CT data: atlas-based approach and comparative study.

    abstract::Atlas-based methods for automated preoperative planning of the femoral stem implant in total hip arthroplasty are described. Statistical atlases are constructed from a number of past preoperative plans prepared by experienced surgeons in order to represent the surgeon's expertise of the planning. Two types of atlases ...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2011.10.005

    authors: Otomaru I,Nakamoto M,Kagiyama Y,Takao M,Sugano N,Tomiyama N,Tada Y,Sato Y

    更新日期:2012-02-01 00:00:00

  • Continuous diffusion signal, EAP and ODF estimation via Compressive Sensing in diffusion MRI.

    abstract::In this paper, we exploit the ability of Compressed Sensing (CS) to recover the whole 3D Diffusion MRI (dMRI) signal from a limited number of samples while efficiently recovering important diffusion features such as the Ensemble Average Propagator (EAP) and the Orientation Distribution Function (ODF). Some attempts to...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2013.02.010

    authors: Merlet SL,Deriche R

    更新日期:2013-07-01 00:00:00

  • Automated classification of lung bronchovascular anatomy in CT using AdaBoost.

    abstract::Lung CAD systems require the ability to classify a variety of pulmonary structures as part of the diagnostic process. The purpose of this work was to develop a methodology for fully automated voxel-by-voxel classification of airways, fissures, nodules, and vessels from chest CT images using a single feature set and cl...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2007.03.004

    authors: Ochs RA,Goldin JG,Abtin F,Kim HJ,Brown K,Batra P,Roback D,McNitt-Gray MF,Brown MS

    更新日期:2007-06-01 00:00:00

  • Major depressive disorder identification by referenced multiset canonical correlation analysis with clinical scores.

    abstract::A novel method based on multiset canonical correlation analysis (mCCA) and linear discriminant analysis (LDA) is presented to identify the major depressive disorder (MDD). The new method comprises two parts, namely, the mCCA-rreg and sparse LDA models. The mCCA-rreg model extends the classical canonical correlation mo...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2019.101600

    authors: Lin W,Lv D,Han Z,Dong J,Yang L

    更新日期:2020-02-01 00:00:00

  • Simulation of cardiac pathologies using an electromechanical biventricular model and XMR interventional imaging.

    abstract::Simulating cardiac electromechanical activity is of great interest for a better understanding of pathologies and for therapy planning. Design and validation of such models is difficult due to the lack of clinical data. XMR systems are a new type of interventional facility in which patients can be rapidly transferred b...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2005.05.003

    authors: Sermesant M,Rhode K,Sanchez-Ortiz GI,Camara O,Andriantsimiavona R,Hegde S,Rueckert D,Lambiase P,Bucknall C,Rosenthal E,Delingette H,Hill DL,Ayache N,Razavi R

    更新日期:2005-10-01 00:00:00

  • Local spatio-temporal encoding of raw perfusion MRI for the prediction of final lesion in stroke.

    abstract::We address the medical image analysis issue of predicting the final lesion in stroke from early perfusion magnetic resonance imaging. The classical processing approach for the dynamical perfusion images consists in a temporal deconvolution to improve the temporal signals associated with each voxel before performing pr...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2018.08.008

    authors: Giacalone M,Rasti P,Debs N,Frindel C,Cho TH,Grenier E,Rousseau D

    更新日期:2018-12-01 00:00:00

  • Global localization of 3D anatomical structures by pre-filtered Hough forests and discrete optimization.

    abstract::The accurate localization of anatomical landmarks is a challenging task, often solved by domain specific approaches. We propose a method for the automatic localization of landmarks in complex, repetitive anatomical structures. The key idea is to combine three steps: (1) a classifier for pre-filtering anatomical landma...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2013.02.004

    authors: Donner R,Menze BH,Bischof H,Langs G

    更新日期:2013-12-01 00:00:00

  • Nonlinear multiscale regularisation in MR elastography: Towards fine feature mapping.

    abstract::Fine-featured elastograms may provide additional information of radiological interest in the context of in vivo elastography. Here a new image processing pipeline called ESP (Elastography Software Pipeline) is developed to create Magnetic Resonance Elastography (MRE) maps of viscoelastic parameters (complex modulus ma...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2016.05.012

    authors: Barnhill E,Hollis L,Sack I,Braun J,Hoskins PR,Pankaj P,Brown C,van Beek EJR,Roberts N

    更新日期:2017-01-01 00:00:00

  • Automated comprehensive Adolescent Idiopathic Scoliosis assessment using MVC-Net.

    abstract::Automated quantitative estimation of spinal curvature is an important task for the ongoing evaluation and treatment planning of Adolescent Idiopathic Scoliosis (AIS). It solves the widely accepted disadvantage of manual Cobb angle measurement (time-consuming and unreliable) which is currently the gold standard for AIS...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2018.05.005

    authors: Wu H,Bailey C,Rasoulinejad P,Li S

    更新日期:2018-08-01 00:00:00

  • Dual-core steered non-rigid registration for multi-modal images via bi-directional image synthesis.

    abstract::In prostate cancer radiotherapy, computed tomography (CT) is widely used for dose planning purposes. However, because CT has low soft tissue contrast, it makes manual contouring difficult for major pelvic organs. In contrast, magnetic resonance imaging (MRI) provides high soft tissue contrast, which makes it ideal for...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2017.05.004

    authors: Cao X,Yang J,Gao Y,Guo Y,Wu G,Shen D

    更新日期:2017-10-01 00:00:00

  • Predicting the progression of mild cognitive impairment using machine learning: A systematic, quantitative and critical review.

    abstract::We performed a systematic review of studies focusing on the automatic prediction of the progression of mild cognitive impairment to Alzheimer's disease (AD) dementia, and a quantitative analysis of the methodological choices impacting performance. This review included 172 articles, from which 234 experiments were extr...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2020.101848

    authors: Ansart M,Epelbaum S,Bassignana G,Bône A,Bottani S,Cattai T,Couronné R,Faouzi J,Koval I,Louis M,Thibeau-Sutre E,Wen J,Wild A,Burgos N,Dormont D,Colliot O,Durrleman S

    更新日期:2021-01-01 00:00:00

  • Wavelet optimization for content-based image retrieval in medical databases.

    abstract::We propose in this article a content-based image retrieval (CBIR) method for diagnosis aid in medical fields. In the proposed system, images are indexed in a generic fashion, without extracting domain-specific features: a signature is built for each image from its wavelet transform. These image signatures characterize...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/j.media.2009.11.004

    authors: Quellec G,Lamard M,Cazuguel G,Cochener B,Roux C

    更新日期:2010-04-01 00:00:00

  • Stochastic finite element framework for simultaneous estimation of cardiac kinematic functions and material parameters.

    abstract::A stochastic finite element framework is presented for the simultaneous estimation of the cardiac kinematic functions and material model parameters from periodic medical image sequences. While existing biomechanics studies of the myocardial material constitutive laws have assumed known tissue kinematic measurements, a...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/s1361-8415(03)00066-5

    authors: Shi P,Liu H

    更新日期:2003-12-01 00:00:00

  • Adaptive, template moderated, spatially varying statistical classification.

    abstract::A novel image segmentation algorithm was developed to allow the automatic segmentation of both normal and abnormal anatomy from medical images. The new algorithm is a form of spatially varying statistical classification, in which an explicit anatomical template is used to moderate the segmentation obtained by statisti...

    journal_title:Medical image analysis

    pub_type: 杂志文章

    doi:10.1016/s1361-8415(00)00003-7

    authors: Warfield SK,Kaus M,Jolesz FA,Kikinis R

    更新日期:2000-03-01 00:00:00