Applications and research advance of genome shuffling for industrial microbial strains improvement.

Abstract:

:Genome shuffling, an efficient and practical strain improvement technology via recursive protoplasts fusion, can break through the limits of species even genus to accelerate the directed evolution of microbial strains, without requiring the comprehensively cognized genetic background and operable genetic system. Hence this technology has been widely used for many important strains to obtain the desirable industrial phenotypes. In this review, we introduce the procedure of genome shuffling, discuss the new aid strategies of genome shuffling, summarize the applications of genome shuffling for increasing metabolite yield, improving strain tolerance, enhancing substrate utilization, and put forward the outlook to the future development of this technology.

authors

Chen L,Xin QH,Ma LM,Li RF,Bian K

doi

10.1007/s11274-020-02936-w

subject

Has Abstract

pub_date

2020-09-24 00:00:00

pages

158

issue

10

eissn

0959-3993

issn

1573-0972

pii

10.1007/s11274-020-02936-w

journal_volume

36

pub_type

杂志文章,评审
  • Effects of the detergent Tween 80 on Thermomonospora curvata.

    abstract::Tween 80 (0.1%, v/v) added to Thermomonospora curvata growing in minimal medium caused a transient lowering of the dry cell mass, decreased the optimal growth temperature of the thermophile from 62 to 54°C, and increased extracellular esterase activity. Cells grown in the presence of Tween 80 had decreased concentrati...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/BF00327954

    authors: Thies E,Jenkins T,Stutzenberger F

    更新日期:1994-11-01 00:00:00

  • Constitutive expression, purification and characterization of bovine prochymosin in Pichia pastoris GS115.

    abstract::Chymosin can specifically break down the Phe105-Met106 peptide bond of milk κ-casein to form insoluble para-κ-casein, resulting in milk coagulation, a process that is used in making cheese. In this study, in order to obtain an alternative milk coagulant which is safe and efficient, and simultaneously can produce chees...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-012-1012-7

    authors: Jiang XP,Yin ML,Chen P,Yang Q

    更新日期:2012-05-01 00:00:00

  • Lipid content and fatty acid composition in N2-fixing cyanobacterium Anabaena doliolum as affected by molybdenum deficiency.

    abstract::Anabaena doliolum grown under molybdenum deficiency produced less biomass (on a dry wt basis) and the cells had lower protein content but higher carbohydrate content than Mo-grown material. Molybdenum deficiency led to a slight decrease in chlorophyll a, a 1.5-fold increase in carotenoids and a 1.4-fold increase in to...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/BF00386284

    authors: Rathore DS,Kumar A,Kumar HD

    更新日期:1993-09-01 00:00:00

  • Composition and variation of sediment bacterial and nirS-harboring bacterial communities at representative sites of the Bohai Gulf coastal zone, China.

    abstract::With rapid urbanization, anthropogenic activities are increasingly influencing the natural environment of the Bohai Bay. In this study, the composition and variation of bacterial and nirS-harboring bacterial communities in the coastal zone sediments of the Bohai Gulf were analyzed using PCR-based clone libraries. A to...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-013-1553-4

    authors: Guan X,Zhu L,Li Y,Xie Y,Zhao M,Luo X

    更新日期:2014-04-01 00:00:00

  • An efficient ABC transporter signal peptide directs heterologous protein secretion in food-grade hosts.

    abstract::An efficient expression-secretion system for heterologous protein production in food-grade hosts, Lactobacillus plantarum and Bacillus subtilis, is still required to broaden their applications. The optimal signal peptide compatible with both the desired protein and the target host is important for the system. Here, we...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-020-02932-0

    authors: Promchai R,Visessanguan W,Luxananil P

    更新日期:2020-09-19 00:00:00

  • Microbiological and environmental issues in show caves.

    abstract::Cultural tourism expanded in the last half of the twentieth century, and the interest of visitors has come to include caves containing archaeological remains. Some show caves attracted mass tourism, and economical interests prevailed over conservation, which led to a deterioration of the subterranean environment and t...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章,评审

    doi:10.1007/s11274-012-1070-x

    authors: Saiz-Jimenez C

    更新日期:2012-07-01 00:00:00

  • Induction of laccases in Trametes versicolor by aqueous wood extracts.

    abstract::The induction of laccase isoforms in Trametes versicolor HEMIM-9 by aqueous extracts (AE) from softwood and hardwood was studied. Samples of sawdust of Pinus sp., Cedrela sp., and Quercus sp. were boiled in water to obtain AE. Different volumes of each AE were added to fungal cultures to determine the amount of AE nee...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-013-1420-3

    authors: Bertrand B,Martínez-Morales F,Tinoco R,Rojas-Trejo S,Serrano-Carreón L,Trejo-Hernández MR

    更新日期:2014-01-01 00:00:00

  • Lichen secondary metabolite evernic acid as potential quorum sensing inhibitor against Pseudomonas aeruginosa.

    abstract::Cystic Fibrosis is a genetic disease and it affects the respiratory and digestive systems. Pseudomonas aeruginosa infections in Cystic Fibrosis are presented as the main cause for high mortality and morbidity rates. Pseudomonas aeruginosa populations can regulate their virulence gene expressions via the bacterial comm...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-016-2105-5

    authors: Gökalsın B,Sesal NC

    更新日期:2016-09-01 00:00:00

  • Characterization of a Rhizobium etli chromosomal gene required for nodule development on Phaseolus vulgaris L.

    abstract::A chromosomal gene, required for nodule development on Phaseolus bean, was characterized from Rhizobium etli strain TAL182. MLC640 is a Tn5 insertion mutant of TAL182 which shows decreased motility in soft TY agar and is defective in nodule development. The site of Tn5 insertion in MLC640 mapped to a 3.6-kb EcoRI chro...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/BF00367673

    authors: Pooyan S,George ML,Borthakur D

    更新日期:1994-09-01 00:00:00

  • Candida identification: a journey from conventional to molecular methods in medical mycology.

    abstract::The incidence of Candida infections have increased substantially in recent years due to aggressive use of immunosuppressants among patients. Use of broad-spectrum antibiotics and intravascular catheters in the intensive care unit have also attributed with high risks of candidiasis among immunocompromised patients. Amo...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章,评审

    doi:10.1007/s11274-013-1574-z

    authors: Alam MZ,Alam Q,Jiman-Fatani A,Kamal MA,Abuzenadah AM,Chaudhary AG,Akram M,Haque A

    更新日期:2014-05-01 00:00:00

  • Enhanced efficacy of nitrifying biomass by modified PVA_SB entrapment technique.

    abstract::In this study, we developed a novel technique for preparing polyvinyl alcohol (PVA) hydrogel as an immobilizing matrix by the addition of sodium bicarbonate. This resulted in an increase in the specific surface area of PVA_sodium bicarbonate (PVA_SB) hydrogel beads to 65.23 m(2) g(-1) hydrogel beads, which was approxi...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-014-1621-4

    authors: Qiao S,Duan X,Zhou J,Cheng Y,Bhatti Z

    更新日期:2014-07-01 00:00:00

  • Genetic diversity in Monilinia laxa populations in stone fruit species in Hungary.

    abstract::The objectives of this study were firstly, to determine the genetic diversity of Monilinia laxa isolates from Hungary, using the PCR-based inter-simple sequence repeat (ISSR) and randomly amplified polymorphic DNA (RAPD) technique; secondly, to prepare genetic diversity groups based on the dendrograms; and finally, to...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-014-1613-4

    authors: Fazekas M,Madar A,Sipiczki M,Miklós I,Holb IJ

    更新日期:2014-06-01 00:00:00

  • Lactonase-expressing Lactobacillus plantarum NC8 attenuates the virulence factors of multiple drug resistant Pseudomonas aeruginosa in co-culturing environment.

    abstract::Pseudomonas aeruginosa possesses an arcade of both cell-associated and extracellular cytotoxic virulence factors which are regulated by a multi-component quorum sensing system. Many research studies report success of lactonase in combating the pathogenicity of P. aeruginosa but delivery of lactonase remains a challeng...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-014-1645-9

    authors: Joshi S,Kaur A,Sharma P,Harjai K,Capalash N

    更新日期:2014-08-01 00:00:00

  • Characterization of a symbiotic, heterocystous, N2-fixing cyanobacterium fromCycas coralloid roots.

    abstract::A symbiotic, heterocystous, N2-fixing blue-green alga, isolated from the coralloid roots of a xerophytic plant,Cycas revoluta, grew best in liquid medium supplemented with 4 mM NO 3 (-) . Morphologically, the isolated alga was identical to that of the natural endophyte but the cell size had decreased markedly. The alg...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/BF01201954

    authors: Sharma A,Mishra DP,Kumar A

    更新日期:1992-09-01 00:00:00

  • Biochemical tests to determine the biodegradability potential of bacterial strains in PAH polluted sites.

    abstract::Although the use of degrading-bacteria is one of the most efficient methods for the bioremediation of polluted sites, detection, selection and proliferation of the most efficient and competing bacteria is still a challenge. The objective of this multi-stage research was to investigate the effects of the selected bacte...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-020-02950-y

    authors: Naeim AH,Baharlouei J,Ataabadi M

    更新日期:2020-11-09 00:00:00

  • Chromate reduction by a chromate-resistant bacterium, Microbacterium sp.

    abstract::Heavy-metal chromium [Cr(VI)] is a ubiquitous environmental pollutant. Comparing with chemical reduction, microbiological reduction is considered to be a friendly and cheaper way to decrease the damage caused by chromate. A bacterial strain, CR-07, which is resistant to and capable of reducing chromate was isolated fr...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-011-0962-5

    authors: Liu Z,Wu Y,Lei C,Liu P,Gao M

    更新日期:2012-04-01 00:00:00

  • PCR-DGGE analysis of the bacterial composition of a kaolin slurry showing altered rheology.

    abstract::Kaolin is an important industrial raw material and a basis of a range of different products. Microbial spoilage is a detrimental process observed especially in kaolin slurries, leading to low quality products and economic loss. Although the alteration of kaolin slurries in ceramic industry was observed, the process an...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-011-0976-z

    authors: Papp I,Balázs M,Tombácz E,Babcsán N,Kesserű P,Kiss I,Szvetnik A

    更新日期:2012-04-01 00:00:00

  • Optimization of protease production by endophytic fungus, Alternaria alternata, isolated from an Australian native plant.

    abstract::Endophytes are recognised as potential sources of novel secondary metabolites, including enzymes and drugs, with applications in medicine, agriculture and industry. There is a growing need for new enzymes, including proteases, for use in industry that can function under a variety of conditions. In this study, three fu...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-014-1598-z

    authors: Zaferanloo B,Quang TD,Daumoo S,Ghorbani MM,Mahon PJ,Palombo EA

    更新日期:2014-06-01 00:00:00

  • Vertical distribution of ammonia-oxidizing archaea (AOA) in the hyporheic zone of a eutrophic river in North China.

    abstract::Nitrification plays a significant role in the global nitrogen cycle, and this concept has been challenged with the discovery of ammonia-oxidizing archaea (AOA) in the environment. In this paper, the vertical variations of the diversity and abundance of AOA in the hyporheic zone of the Fuyang River in North China were ...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-013-1559-y

    authors: Wang Z,Wang Z,Huang C,Pei Y

    更新日期:2014-04-01 00:00:00

  • Cloning, expression and functional characterization of a novel trehalose synthase from marine Pseudomonas sp. P8005.

    abstract::Trehalose synthase (TreS) catalyzes the reversible interconversion of maltose and trehalose. A novel treS gene with a length of 3,369 bp, encoding a protein of 1,122 amino acid residues with a predicted molecular mass of 126 kDa, was cloned from a marine Pseudomonas sp. P8005 (CCTCC: M2010298) and expressed in Escheri...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-013-1385-2

    authors: Gao Y,Xi Y,Lu XL,Zheng H,Hu B,Liu XY,Jiao BH

    更新日期:2013-11-01 00:00:00

  • Diversity and antimicrobial activity of culturable fungi from fishscale bamboo (Phyllostachys heteroclada) in China.

    abstract::An important and useful bamboo species, fishscale bamboo (Phyllostachys heteroclada Oliver), is broadly distributed in Southeast China and has multiple purposes, including uses in cuisine, weaving, Chinese medicine and ecological protection. However, no previous studies have focused on the endophytes of this plant. In...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-017-2267-9

    authors: Zhou YK,Shen XY,Hou CL

    更新日期:2017-06-01 00:00:00

  • Impact of plant-associated bacteria biosensors on plant growth in the presence of hexavalent chromium.

    abstract::Cr(VI) is a highly toxic metal produced by anthropogenic activity which may impact the environment, affecting plants and animals. In plants, chromium both as Cr(III) or Cr(VI) can be absorbed by roots, is poorly translocated and affects negatively plant growth. Plants used in phytoremediation need to cope with chromiu...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-017-2389-0

    authors: Francisco R,Branco R,Schwab S,Baldani JI,Morais PV

    更新日期:2017-12-18 00:00:00

  • Microbial flora and some chemical properties of ersho, a starter for teff (Eragrostis tef) fermentation.

    abstract::Ersho is a clear, yellow liquid that accumulates on the surface of fermenting teff-flour batter and is collected to serve as an inoculum for the next fermentation. The pH of ersho samples was about 3.5 and titratable acidity ranged between 3.1% and 5.7%. The mean aerobic mesophilic counts from four households varied b...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/BF00357567

    authors: Ashenafi M

    更新日期:1994-01-01 00:00:00

  • Production of microsclerotia by Brazilian strains of Metarhizium spp. using submerged liquid culture fermentation.

    abstract::We investigated the potential production and desiccation tolerance of microsclerotia (MS) by Brazilian strains of Metarhizium anisopliae (Ma), M. acridum (Mc) and M. robertsii (Mr). These fungi were grown in a liquid medium containing 16 g carbon l⁻¹ with a carbon:nitrogen ratio of 50:1. One hundred milliliters cultur...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-013-1581-0

    authors: Mascarin GM,Kobori NN,de Jesus Vital RC,Jackson MA,Quintela ED

    更新日期:2014-05-01 00:00:00

  • Physiological adaptations of yeasts living in cold environments and their potential applications.

    abstract::Yeasts, widely distributed across the Earth, have successfully colonized cold environments despite their adverse conditions for life. Lower eukaryotes play important ecological roles, contributing to nutrient recycling and organic matter mineralization. Yeasts have developed physiological adaptations to optimize their...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章,评审

    doi:10.1007/s11274-015-1900-8

    authors: Alcaíno J,Cifuentes V,Baeza M

    更新日期:2015-10-01 00:00:00

  • Microbiological quality of pork meat from local Hong Kong markets.

    abstract::Over a 3-week period, samples of fresh, chopped, pork meat were taken every morning and afternoon from 50 meat stalls. Microbiological examination revealed that the samples had (c.f.u./g): total microbes, 1×10(3) to 2.14×10(6); mean probable numbers of coliforms and Escherichia coli, 1.51×10(3) to 1.15×10(4); and yeas...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/BF00361025

    authors: O'Toole DK

    更新日期:1995-11-01 00:00:00

  • Gene cloning, expression and characterisation of a new β-agarase, AgWH50C, producing neoagarobiose from Agarivorans gilvus WH0801.

    abstract::agWH50C, a novel β-agarase gene, was cloned from Agarivorans gilvus WH0801 by degenerate PCR and nested PCR. The gene agWH50C comprized a 2,223-bp, encoding a protein of 740 amino acids. Sequencing results demonstrated that AgWH50C shared 45 % sequence identity with a well characterized β-agarase, Aga50D, from Sacchar...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-013-1591-y

    authors: Liu N,Mao X,Yang M,Mu B,Wei D

    更新日期:2014-06-01 00:00:00

  • Immobilization and characterization of carbonic anhydrase purified from E. coli MO1 and its influence on CO₂ sequestration.

    abstract::The present investigation entails the immobilisation and characterisation of Escherichia coli MO1-derived carbonic anhydrase (CA) and its influence on the transformation of CO₂ to CaCO₃. CA was purified from MO1 using a combination of Sephadex G-75 and DEAE cellulose column chromatography, resulting in 4.64-fold purif...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-013-1343-z

    authors: Oviya M,Sukumaran V,Giri SS

    更新日期:2013-10-01 00:00:00

  • Effect of ionic liquids alkyl chain length on horseradish peroxidase thermal inactivation kinetics and activity recovery after inactivation.

    abstract::The effects of different alkyl chain lengths of ionic liquids 1-ethyl-, 1-butyl- and 1-hexyl-3-methylimidazolium chloride, on the catalytic activity, thermal stability and deactivation kinetics of horseradish peroxidase were studied in the temperature range of 45-85 °C. The presence of 1-ethyl- and 1-butyl-ionic liqui...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-013-1466-2

    authors: Machado MF,Queirós RP,Santos MD,Fidalgo LG,Delgadillo I,Saraiva JA

    更新日期:2014-02-01 00:00:00

  • Absence of AfuXpot, the yeast Los1 homologue, limits Aspergillus fumigatus growth under amino acid deprived condition.

    abstract::In Saccharomyces cerevisiae, los1 encodes a nuclear tRNA exporter. Despite the non-essentiality, the deletion of los1 has been shown to extend replicative life span in yeast. Here, we characterized AfuXpot, the los1 homologue in human pathogen Aspergillus fumigatus and found that it is continuously expressed during fu...

    journal_title:World journal of microbiology & biotechnology

    pub_type: 杂志文章

    doi:10.1007/s11274-020-2805-8

    authors: Azizi A,SharifiRad A,Enayati S,Azizi M,Bayat M,Khalaj V

    更新日期:2020-01-30 00:00:00