Human papillomavirus type 16 variant analysis of E6, E7, and L1 [corrected] genes and long control region in [corrected] cervical carcinomas in patients in northeast China.

Abstract:

:Human papillomavirus type 16 (HPV 16) plays a cardinal role in the pathogenesis of cervical cancer. HPV 16 has intratypic variants which show different geographical distributions and different oncogenic potentials. To analyze the presence of sequence variations of HPV 16 variants in northeast China, 71 cervical carcinomas were identified by HPV typing. HPV 16-positive specimens were analyzed by PCR-directed sequencing in the E6, E7, and L1 genes and the LCR (long control region). The variation data were compared with those of neighboring districts. In this hospital-based study, HPV 16 was the most common type (73.24%). In HPV 16-positive specimens, 67.31% belonged to the European (E) lineage, while 32.69% were Asian (As) variants. The Asian-American (AA), African-1 (Af-1), African-2 (Af-2), and northern American (NA) lineages were not detected. The most frequently observed variation sites were T178G (32.69%) in E6; A647G (34.62%), G666A (38.46%), and T846C (32.69%) in E7; C6826T (36.17%) and G7060A (61.70%) in L1; and G7521A (98.08%) in the LCR. The most prevalent amino acid variations were D25E in E6 and N29S in E7. In addition, 28 novel variations of HPV 16 were reported. Some covariations between different genes were obtained. In this study, HPV 16 variants belonged to the European lineage and the Asian lineage. Compared with neighboring districts, the distribution of HPV 16 variants in northeast China had a typical pattern. As the first report on HPV 16 variants in northeast China, it should be helpful for designing a HPV vaccine and HPV vaccination program in China.

journal_name

J Clin Microbiol

authors

Shang Q,Wang Y,Fang Y,Wei L,Chen S,Sun Y,Li B,Zhang F,Gu H

doi

10.1128/JCM.02203-10

subject

Has Abstract

pub_date

2011-07-01 00:00:00

pages

2656-63

issue

7

eissn

0095-1137

issn

1098-660X

pii

JCM.02203-10

journal_volume

49

pub_type

杂志文章
  • Isolation of nontoxigenic Vibrio cholerae O1 from a human wound infection.

    abstract::Vibrio cholerae serotype O1 organisms that do not produce cholera toxin and, in fact, lack the genetic material encoding the enterotoxin have recently been detected in coastal regions of the United States. Although these organisms have been assumed to be nonpathogenic, they have been considered a potential reservoir o...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.17.5.918-920.1983

    authors: Johnston JM,McFarland LM,Bradford HB,Caraway CT

    更新日期:1983-05-01 00:00:00

  • Name Changes for Fungi of Medical Importance, 2018 to 2019.

    abstract::The current article summarizes recent changes in nomenclature for fungi of medical importance published in the years 2018 to 2019, including new species and revised names for existing ones. Many of the revised names have been widely adopted without further discussion. However, those that concern common pathogens of hu...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章,评审

    doi:10.1128/JCM.01811-20

    authors: Borman AM,Johnson EM

    更新日期:2021-01-21 00:00:00

  • Novel IS711 chromosomal location useful for identification of marine mammal Brucella genotype ST27, which is associated with zoonotic infection.

    abstract::We report a novel IS711 chromosomal location that is specific for the Brucella genotype ST27 previously associated with Pacific marine mammals and human zoonotic infection in New Zealand and Peru. Our data support the previous observation that this peculiar genotype is distinct from those commonly isolated from the At...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.05238-11

    authors: Cloeckaert A,Bernardet N,Koylass MS,Whatmore AM,Zygmunt MS

    更新日期:2011-11-01 00:00:00

  • Interpretive criteria and quality control parameters for testing bacterial susceptibility to the fluoroquinolone PD131628.

    abstract::For testing bacterial susceptibility to PD131628, a 5-micrograms disk and the following tentative interpretive criteria may be used: > or = 19 mm for susceptible (MIC, < or = 1.0 micrograms/ml), 16 to 18 mm for intermediate (MIC, 2.0 micrograms/ml), and < or = 15 mm for resistant (MIC, > or = 4.0 micrograms/ml). For s...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.33.1.235-238.1995

    authors: Barry AL,Fuchs PC,Allen SD,Tenover FC,Jorgensen JH,Reller LB

    更新日期:1995-01-01 00:00:00

  • Simple and rapid detection of Candida albicans DNA in serum by PCR for diagnosis of invasive candidiasis.

    abstract::A rapid and sensitive PCR assay for the detection of Candida albicans DNA in serum was established. DNA from human serum samples was purified using the QIAamp blood kit, which proved to be a fast and simple method for isolating minute amounts of Candida DNA from clinical specimens for diagnosis of invasive candidiasis...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.38.8.3016-3021.2000

    authors: Wahyuningsih R,Freisleben HJ,Sonntag HG,Schnitzler P

    更新日期:2000-08-01 00:00:00

  • Comparison between Saliva and Nasopharyngeal Swab Specimens for Detection of Respiratory Viruses by Multiplex Reverse Transcription-PCR.

    abstract::Nasopharyngeal swabs (NPSs) are being widely used as specimens for multiplex real-time reverse transcription (RT)-PCR for respiratory virus detection. However, it remains unclear whether NPS specimens are optimal for all viruses targeted by multiplex RT-PCR. In addition, the procedure to obtain NPS specimens causes co...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.01704-16

    authors: Kim YG,Yun SG,Kim MY,Park K,Cho CH,Yoon SY,Nam MH,Lee CK,Cho YJ,Lim CS

    更新日期:2016-12-28 00:00:00

  • Pseudoepidemic of Nocardia asteroides associated with a mycobacterial culture system.

    abstract::Nocardia isolations increased from 0.7 to 11.7/1,000 acid-fast bacillus and mycological cultures (P less than 0.000001). Only three isolations from one patient represented infection. Pseudoepidemic strain identity was confirmed by DNA fingerprinting; the isolate causing infection was distinct. The end of the pseudoepi...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.30.5.1357-1360.1992

    authors: Patterson JE,Chapin-Robertson K,Waycott S,Farrel P,McGeer A,McNeil MM,Edberg SC

    更新日期:1992-05-01 00:00:00

  • Multiplex PCR for rapid detection of Staphylococcus aureus isolates suspected to represent community-acquired strains.

    abstract::The continuous spread of community-acquired methicillin-resistant Staphylococcus aureus (caMRSA) and the introduction of these highly virulent isolates into hospitals represent increasing threats. The timely recognition of caMRSA strains is crucial for infection control purposes. Thus, we developed a PCR-based assay f...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.01600-07

    authors: Strommenger B,Braulke C,Pasemann B,Schmidt C,Witte W

    更新日期:2008-02-01 00:00:00

  • Multilocus sequence typing of methicillin-resistant Staphylococcus aureus from an area of low endemicity by real-time PCR.

    abstract::A protocol for multilocus sequence typing (MLST) of methicillin-resistant Staphylococcus aureus (MRSA) was adapted to real-time LightCycler System PCR for efficient and rapid amplification of seven housekeeping genes in the same PCR run and real-time detection of the products. The method was evaluated on a representat...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.43.9.4448-4454.2005

    authors: Berglund C,Mölling P,Sjöberg L,Söderquist B

    更新日期:2005-09-01 00:00:00

  • Comparison of agar dilution, broth microdilution, E-test, disk diffusion, and automated Vitek methods for testing susceptibilities of Enterococcus spp. to vancomycin.

    abstract::An evaluation was undertaken to determine the optimal method for testing the susceptibilities of 100 clinical isolates and two reference strains of Enterococcus spp. to vancomycin in vitro. Six testing methods were studied by using the following media and incubation times: agar screen with the Synergy Quad Plate (Reme...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.35.12.3258-3263.1997

    authors: Kohner PC,Patel R,Uhl JR,Garin KM,Hopkins MK,Wegener LT,Cockerill FR 3rd

    更新日期:1997-12-01 00:00:00

  • Colonization of Mexican patients by multiple Helicobacter pylori strains with different vacA and cagA genotypes.

    abstract::Helicobacter pylori virulence determinants have not previously been studied in detail in Latin Americans with H. pylori infections. We characterized the vacA (vacuolating cytotoxin gene A) and cagA (cytotoxin-associated gene A) types of more than 400 single-colony isolates from 20 patients in Mexico City. For 17 patie...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.37.9.3001-3004.1999

    authors: Morales-Espinosa R,Castillo-Rojas G,Gonzalez-Valencia G,Ponce de León S,Cravioto A,Atherton JC,López-Vidal Y

    更新日期:1999-09-01 00:00:00

  • Development and application of real-time PCR assay for quantification of Mycobacterium ulcerans DNA.

    abstract::Buruli ulcer, an infection caused by Mycobacterium ulcerans, is, after tuberculosis and leprosy, the third most common mycobacterial disease. The mode of transmission of M. ulcerans is not exactly known, but since Buruli ulcer often occurs in focalized swampy areas, it is assumed that there is a reservoir of the patho...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/jcm.41.9.4231-4237.2003

    authors: Rondini S,Mensah-Quainoo E,Troll H,Bodmer T,Pluschke G

    更新日期:2003-09-01 00:00:00

  • U.S. case report of cerebral phaeohyphomycosis caused by Ramichloridium obovoideum (R. mackenziei): criteria for identification, therapy, and review of other known dematiaceous neurotropic taxa.

    abstract::We report a case of cerebral phaeohyphomycosis in a 36-year-old male caused by the neurotropic fungus Ramichloridium obovoideum (Matushima) de Hoog 1977 (Ramichloridium mackenziei Campbell et Al-Hedaithy 1993). This man resided in the Middle East, where the fungus appears to be endemic and, possibly, geographically re...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章,评审

    doi:10.1128/JCM.36.3.708-715.1998

    authors: Sutton DA,Slifkin M,Yakulis R,Rinaldi MG

    更新日期:1998-03-01 00:00:00

  • Lack of utility of the lysis-centrifugation blood culture method for detection of fungemia in immunocompromised cancer patients.

    abstract::We retrospectively compared the utility of a fungal isolation device (Isolator) versus conventional techniques for recovering fungal organisms from blood cultures obtained from neutropenic cancer patients. Positive cultures were deemed true pathogens, possible pathogens, or contaminants according to laboratory and cli...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.36.1.290-293.1998

    authors: Creger RJ,Weeman KE,Jacobs MR,Morrissey A,Parker P,Fox RM,Lazarus HM

    更新日期:1998-01-01 00:00:00

  • Genotypic identification and characterization of species and strains within the genus Candida by using random amplified polymorphic DNA.

    abstract::Random amplified polymorphic DNA (RAPD) was used to better characterize the genotypic relatedness among medically important Candida species. By using short oligomer primers (10-mers) with arbitrarily chosen sequences in the polymerase chain reaction, distinctive and reproducible sets of polymerase chain reaction produ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.30.12.3249-3254.1992

    authors: Lehmann PF,Lin D,Lasker BA

    更新日期:1992-12-01 00:00:00

  • Evaluation of a microtiter plate fluorescent-antibody assay for rapid detection of human cytomegalovirus infection.

    abstract::The use of monoclonal antibody (MAb) p63-27, which is reactive with the major immediate-early human cytomegalovirus (HCMV) protein pp72, was explored for the rapid diagnosis of HCMV viruria. The rapid assay detected all but 1 of 19 specimens identified by standard virus isolation methods from 1,676 newborn urine speci...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.30.3.721-723.1992

    authors: Boppana SB,Smith RJ,Stagno S,Britt WJ

    更新日期:1992-03-01 00:00:00

  • Detection and quantification of latently infected B lymphocytes in Epstein-Barr virus-seropositive, healthy individuals by polymerase chain reaction.

    abstract::We designed a highly sensitive and specific polymerase chain reaction assay for the detection of Epstein-Barr virus (EBV)-related sequences in B-cell DNA of EBV-seropositive healthy individuals. By using this assay, we were able to amplify at least 10 copies of a plasmid containing the BamHI-W region, which is repeate...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.30.11.2826-2829.1992

    authors: Wagner HJ,Bein G,Bitsch A,Kirchner H

    更新日期:1992-11-01 00:00:00

  • Brain abscess caused by Nocardia cyriacigeorgica in a patient with human immunodeficiency virus infection.

    abstract::Nocardia cyriacigeorgica is a recently characterized species within the genus of Nocardia. We report a brain abscess, following a primary pulmonary colonization, due to this species in a human immunodeficiency virus-infected patient. This case confirms that isolation of Nocardia in sputum is associated with a high ris...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.43.9.4895-4897.2005

    authors: Barnaud G,Deschamps C,Manceron V,Mortier E,Laurent F,Bert F,Boiron P,Vinceneux P,Branger C

    更新日期:2005-09-01 00:00:00

  • Fosfomycin and rifampin disk diffusion tests for detection of Escherichia coli mutator strains.

    abstract::A simple method, using commercial disks to detect Escherichia coli mutator strains, is proposed. The breakpoint for detecting strains with a mutation frequency >/=5 x 10(-7) was established at >/=70 and >/=20 colonies in the inhibition zone of fosfomycin and rifampin disks, respectively, after seeding 100 microl of an...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.42.9.4310-4312.2004

    authors: Galán JC,Tato M,Baquero MR,Turrientes C,Baquero F,Martinez JL

    更新日期:2004-09-01 00:00:00

  • Imferon agar: improved medium for isolation of pathogenic Neisseria.

    abstract::Imferon, an iron-dextran complex, enhances the growth of Neisseria gonorrhoeae and N. meningitidis. The use of Imferon as a replacement for ferric nitrate, in a defined supplement for GC agar significantly increased the average colony sizes of both gonococci and meningococci. In comparison with Thayer-Martin medium, I...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:

    authors: Payne SM,Finkelstein RA

    更新日期:1977-09-01 00:00:00

  • Comparison of indirect hemagglutination and indirect immunofluorescence tests with microneutralization tests for detection of type-specific Herpesvirus hominis antibody.

    abstract::Indirect hemagglutinating and immunofluorescent antibody responses to Herpesvirus hominis types 1 and 2 were compared to neutralizing antibody responses in infected humans from whom H. hominis type 1 or 2 was isolated. The indirect immunofluorescent antibody test was shown to be the most sensitive and specific for pri...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:

    authors: Johnson LD,Fuccillo DA,Stalder H,Oxman MA,Fraser CE,Madden DL

    更新日期:1979-03-01 00:00:00

  • Direct micromethod for diagnosis of acute and congenital Chagas' disease.

    abstract::A microhematocrit concentration method (MH) for immediate diagnosis of Chagas' disease during the acute stage or in congenital cases was standardized. Parasitemia as low as 1,000 parasites per ml was detected, after centrifugation of six 50-microliters capillary tubes, by 10-min microscopic observation of each buffy c...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.18.2.327-330.1983

    authors: Feilij H,Muller L,Gonzalez Cappa SM

    更新日期:1983-08-01 00:00:00

  • Enzyme-linked immunosorbent assay for detection of measles antibody.

    abstract::An enzyme-linked immunosorbent assay (ELISA) was developed for the detection of measles immunoglobulin G antibody (MEASELISA). This assay was found to be comparable to the measles hemagglutination inhibition (HAI) test. Approximately 500 sera from three centers were tested by MEASELISA and the HAI test. MEASELISA demo...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.17.5.814-818.1983

    authors: Boteler WL,Luipersbeck PM,Fuccillo DA,O'Beirne AJ

    更新日期:1983-05-01 00:00:00

  • Evaluation of the automicrobic system for susceptibility testing of Pseudomonas aeruginosa to gentamicin, tobramycin, and amikacin.

    abstract::The AutoMicrobic system (AMS; Vitek Systems, Inc., Hazelwood, Mo.) was studied for its ability to produce accurate and precise MIC interpretations for Pseudomonas aeruginosa susceptibility to gentamicin, tobramycin, and amikacin. MICs were determined in parallel on 200 selected P. aeruginosa isolates by using the AMS ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.19.4.502-505.1984

    authors: Woolfrey BF,Lally RT,Ederer MN,Quall CO

    更新日期:1984-04-01 00:00:00

  • Infection of the olecranon bursa by Anthopsis deltoidea.

    abstract::Anthopsis deltoidea was found to be the cause of an olecranon bursitis in a 79-year-old golfer. Serial histological sections of the olecranon bursa showed faintly stained, brown-walled, septate, hyphal elements in the centers of the necrotic debris. The combination of bursectomy and flucytosine treatment cured the inf...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.20.2.271-273.1984

    authors: Kwon-Chung KJ,Droller DD

    更新日期:1984-08-01 00:00:00

  • Evaluation of diagnostic assays for hepatitis E virus in outbreak settings.

    abstract::Hepatitis E virus (HEV) is a major cause of hepatitis. We evaluated five HEV antibody diagnostic assays by using outbreak specimens. The Abbott immunoglobulin G (IgG), Genelabs IgG, and Walter Reed Army Institute of Research (WRAIR) IgM assays were about 90% sensitive; the Abbott IgG and WRAIR total Ig and IgM assays ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.44.4.1581-1583.2006

    authors: Myint KS,Endy TP,Gibbons RV,Laras K,Mammen MP Jr,Sedyaningsih ER,Seriwatana J,Glass JS,Narupiti S,Corwin AL

    更新日期:2006-04-01 00:00:00

  • Identification of Vibrio vulnificus O serovars with antilipopolysaccharide monoclonal antibody.

    abstract::A serotyping scheme for Vibrio vulnificus predicated on the detection of lipopolysaccharide (LPS) antigens is proposed. The serovar O typing scheme used to type V. vulnificus employs polyclonal antisera raised in rabbits immunized with heat-killed whole-cell vaccines. Polyclonal typing sera produced in this manner cro...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.29.8.1684-1688.1991

    authors: Martin SJ,Siebeling RJ

    更新日期:1991-08-01 00:00:00

  • Diagnosis of streptococcal pharyngitis by detection of Streptococcus pyogenes in posterior pharyngeal versus oral cavity specimens.

    abstract::Carbohydrate antigen detection, nucleic acid probe detection, and bacterial culture are commonly used to confirm group A streptococcus (GAS) pharyngitis. Compared to standard throat swab specimens, the sensitivities of these tests with mouth specimens are poor. When testing for GAS pharyngitis, the throat remains the ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.00797-06

    authors: Fox JW,Marcon MJ,Bonsu BK

    更新日期:2006-07-01 00:00:00

  • Detection of kanamycin-resistant Mycobacterium tuberculosis by identifying mutations in the 16S rRNA gene.

    abstract::In Mycobacterium smegmatis and a limited number of Mycobacterium tuberculosis strains, the involvement of alterations of the 16S rRNA gene (rrs) in resistance to kanamycin has been shown. To investigate the extent to which mutations in a specific region of the rrs gene and the kanamycin-resistant phenotype in clinical...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.36.5.1220-1225.1998

    authors: Suzuki Y,Katsukawa C,Tamaru A,Abe C,Makino M,Mizuguchi Y,Taniguchi H

    更新日期:1998-05-01 00:00:00

  • Molecular detection and epidemiology of Sapporo-like viruses.

    abstract::Sapporo-like viruses (SLVs) are associated with acute gastroenteritis in humans. Due to a limited supply of available reagents for diagnosis, little is known about the incidence and pathogenicity of these viruses. We have developed a first-generation generic reverse transcriptase (RT) PCR assay based on a single prime...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.38.2.530-536.2000

    authors: Vinjé J,Deijl H,van der Heide R,Lewis D,Hedlund KO,Svensson L,Koopmans MP

    更新日期:2000-02-01 00:00:00