The mitochondrial genome of the soybean cyst nematode, Heterodera glycines.

Abstract:

:We sequenced the entire coding region of the mitochondrial genome of Heterodera glycines. The sequence obtained comprised 14.9 kb, with PCR evidence indicating that the entire genome comprised a single, circular molecule of approximately 21-22 kb. The genome is the most T-rich nematode mitochondrial genome reported to date, with T representing over half of all nucleotides on the coding strand. The genome also contains the highest number of poly(T) tracts so far reported (to our knowledge), with 60 poly(T) tracts ≥ 12 Ts. All genes are transcribed from the same mitochondrial strand. The organization of the mitochondrial genome of H. glycines shows a number of similarities compared with Radopholus similis, but fewer similarities when compared with Meloidogyne javanica. Very few gene boundaries are shared with Globodera pallida or Globodera rostochiensis. Partial mitochondrial genome sequences were also obtained for Heterodera cardiolata (5.3 kb) and Punctodera chalcoensis (6.8 kb), and these had identical organizations compared with H. glycines. We found PCR evidence of a minicircular mitochondrial genome in P. chalcoensis, but at low levels and lacking a noncoding region. Such circularised genome fragments may be present at low levels in a range of nematodes, with multipartite mitochondrial genomes representing a shift to a condition in which these subgenomic circles predominate.

journal_name

Genome

journal_title

Genome

authors

Gibson T,Farrugia D,Barrett J,Chitwood DJ,Rowe J,Subbotin S,Dowton M

doi

10.1139/g11-024

subject

Has Abstract

pub_date

2011-07-01 00:00:00

pages

565-74

issue

7

eissn

0831-2796

issn

1480-3321

journal_volume

54

pub_type

杂志文章

相关文献

GENOME文献大全
  • Recombination nodule mapping and chiasma distribution in spermatocytes of the pigeon, Columba livia.

    abstract::Pigeon spermatocytes were processed with a drying-down technique and their synaptonemal complex (SC) complements were analyzed by electron microscopy. The synaptonemal complex karyotype of the macrobivalents shows an excellent correspondence with the mitotic karyotype. The number and distribution of recombination nodu...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g98-138

    authors: Pigozzi MI,Solari AJ

    更新日期:1999-04-01 00:00:00

  • Colocalization of antisense RNAs and ribozymes with their target mRNAs.

    abstract::The use of complementary RNA sequences such as antisense RNAs and ribozymes to regulate the expression of specific genes in eukaryotic cells has been well-documented, particularly with their application to both human gene therapy and plant biotechnology. Despite the simplicity of this approach, this technique usually ...

    journal_title:Genome

    pub_type: 杂志文章,评审

    doi:10.1139/g97-802

    authors: Arndt GM,Rank GH

    更新日期:1997-12-01 00:00:00

  • Soybean genomic survey: BAC-end sequences near RFLP and SSR markers.

    abstract::We are building a framework physical infrastructure across the soybean genome by using SSR (simple sequence repeat) and RFLP (restriction fragment length polymorphism) markers to identify BACs (bacterial artificial chromosomes) from two soybean BAC libraries. The libraries were prepared from two genotypes, each digest...

    journal_title:Genome

    pub_type: 杂志文章

    doi:

    authors: Marek LF,Mudge J,Darnielle L,Grant D,Hanson N,Paz M,Huihuang Y,Denny R,Larson K,Foster-Hartnett D,Cooper A,Danesh D,Larsen D,Schmidt T,Staggs R,Crow JA,Retzel E,Young ND,Shoemaker RC

    更新日期:2001-08-01 00:00:00

  • Assessment of genetic variation and differentiation of hop genotypes by microsatellite and AFLP markers.

    abstract::Microsatellites have many desirable marker properties and have been increasingly used in crop plants in genetic diversity studies. Here we report on the characterisation of microsatellite markers and on their use for the determination of genetic identities and the assessment of genetic variability among accessions fro...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-44-5-773

    authors: Jakse J,Kindlhofer K,Javornik B

    更新日期:2001-10-01 00:00:00

  • Development of RNA-seq-based molecular markers for characterizing Thinopyrum bessarabicum and Secale introgressions in wheat.

    abstract::Sequence-based markers have added a new dimension in the efficiency of identifying alien introgressions in wheat. Expressed sequence tag-sequence tagged sites (EST-STS) markers have proved useful in tracing alien chromatin. In this study, we report the development of Thinopyrum bessarabicum- and Secale anatolicum-spec...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2020-0057

    authors: Singh AK,Lo K,Dong C,Zhang P,Trethowan RM,Sharp PJ

    更新日期:2020-11-01 00:00:00

  • Population dynamics of the 2 major mitochondrial DNA haplotypes in experimental populations of Drosophila subobscura.

    abstract::The evolution of Drosophila subobscura mitochondrial DNA has been studied in experimental populations, founded with flies from a natural population from Calvià (Majorca, Balearic Islands, Spain). This population, like others founded in Europe, is characterized by the presence of 2 very common (>95%) mitochondrial hapl...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g05-077

    authors: Oliver P,Balanyà J,Ramon MM,Picornell A,Serra L,Moya A,Castro JA

    更新日期:2005-12-01 00:00:00

  • Genome flux in tomato cell clones cultured in vitro in different physiological equilibria. II. A RAPD analysis of variability.

    abstract::An analysis of the effect of changing physiological conditions on genome evolution in tomato cell populations has been carried out on long-term in vitro cultured clones grown on different auxin-cytokinin equilibria or selected for low-high competence for active defense against Fusarium oxysporum f.sp. lycopersici. RAP...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g96-107

    authors: Bogani P,Simoni A,Lio' P,Scialpi A,Buiatti M

    更新日期:1996-10-01 00:00:00

  • RAPD analysis of seed purity in a commercial hybrid cabbage (Brassica oleracea var. capitata) cultivar.

    abstract::The use of random amplified polymorphic DNA (RAPD) markers for evaluating seed purity in a commercial F1-hybrid cabbage (Brassica oleracea var. capitata) cultivar is demonstrated. Genomic DNA isolated from single ungerminated seed was found to be suitable for RAPD analysis. DNA from F1-hybrid and its parental lines wa...

    journal_title:Genome

    pub_type: 杂志文章

    doi:

    authors: Crockett PA,Bhalla PL,Lee CK,Singh MB

    更新日期:2000-04-01 00:00:00

  • Identification of enhancers that drive the spatially restricted expression of Vsx1 and Rx in the outer proliferation center of the developing Drosophila optic lobe.

    abstract::Combinatorial spatial and temporal patterning of stem cells is a powerful mechanism for the generation of neural diversity in insect and vertebrate nervous systems. In the developing Drosophila medulla, the neural stem cells of the outer proliferation center (OPC) are spatially patterned by the mutually exclusive expr...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2020-0034

    authors: Islam IM,Ng J,Valentino P,Erclik T

    更新日期:2021-02-01 00:00:00

  • Post-glacial recolonization of insular Newfoundland across the Strait of Belle Isle gave rise to an endemic subspecies of woodland caribou, Rangifer tarandus terranovae (Bangs, 1896): evidence from mtDNA haplotypes.

    abstract::Post-glacial origins of woodland caribou (Rangifer tarandus subsp.) on the island of Newfoundland and their relationship to mainland populations have been uncertain. Sequence analysis of 2223 bp of the mitochondrial DNA control region and cytochrome b gene from 233 Newfoundland caribou identified 32 haplotypes in four...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2017-0199

    authors: Wilkerson CD,Mahoney SP,Carr SM

    更新日期:2018-08-01 00:00:00

  • Simple sequence repeat primers used in polymerase chain reaction amplifications to study genetic diversity in barley.

    abstract::In combination with oligonucleotides of arbitrary sequence, 5' anchored oligonucleotides based on simple sequence repeats were used in polymerase chain reaction amplifications to produce barley DNA fingerprints. The aim of this work was (i) to develop a simple nonradioactive experimental procedure to reveal polymorphi...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g96-015

    authors: Sánchez de la Hoz MP,Dávila JA,Loarce Y,Ferrer E

    更新日期:1996-02-01 00:00:00

  • Molecular genetic aspects of sex determination in Drosophila melanogaster.

    abstract::The molecular analyses of three of the regulatory genes (transformer (tra), doublesex (dsx), and transformer-2 (tra-2)) controlling sexual differentiation in Drosophila have demonstrated that the control of RNA processing has a major role in regulating somatic sexual differentiation. The activities of both the tra and...

    journal_title:Genome

    pub_type: 杂志文章,评审

    doi:10.1139/g89-117

    authors: Baker BS,Burtis K,Goralski T,Mattox W,Nagoshi R

    更新日期:1989-01-01 00:00:00

  • Can butterflies cope with city life? Butterfly diversity in a young megacity in southern China.

    abstract::During 30 years of unprecedented urbanization, plant diversity in Shenzhen, a young megacity in southern China, has increased dramatically. Although strongly associated with plant diversity, butterfly diversity generally declines with urbanization, but this has not been investigated in Shenzhen. Considering the speed ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2015-0192

    authors: Sing KW,Dong H,Wang WZ,Wilson JJ

    更新日期:2016-09-01 00:00:00

  • Construction and characterization of two BAC libraries from Brachypodium distachyon, a new model for grass genomics.

    abstract::Brachypodium is well suited as a model system for temperate grasses because of its compact genome and a range of biological features. In an effort to develop resources for genome research in this emerging model species, we constructed 2 bacterial artificial chromosome (BAC) libraries from an inbred diploid Brachypodiu...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g06-087

    authors: Huo N,Gu YQ,Lazo GR,Vogel JP,Coleman-Derr D,Luo MC,Thilmony R,Garvin DF,Anderson OD

    更新日期:2006-09-01 00:00:00

  • Structural and functional analyses of the wheat genomes based on expressed sequence tags (ESTs) related to abiotic stresses.

    abstract::To gain insights into the structure and function of the wheat (Triticum aestivum L.) genomes, we identified 278 ESTs related to abiotic stress (cold, heat, drought, salinity, and aluminum) from 7671 ESTs previously mapped to wheat chromosomes. Of the 278 abiotic stress related ESTs, 259 (811 loci) were assigned to chr...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g06-094

    authors: Ramalingam J,Pathan MS,Feril O,Miftahudin.,Ross K,Ma XF,Mahmoud AA,Layton J,Rodriguez-Milla MA,Chikmawati T,Valliyodan B,Skinner R,Matthews DE,Gustafson JP,Nguyen HT

    更新日期:2006-10-01 00:00:00

  • New karyotypes of Atlantic tree rats, genus Phyllomys (Rodentia: Echimyidae).

    abstract::Phyllomys (Echimyidae, Rodentia) is a genus of Neotropical rodents with available cytogenetic data restricted to six out of 13 species, mainly based on simple staining methods, without detailed analyses. In this work, we present new karyotypes for Phyllomys lamarum (diploid number 2n = 56, fundamental number or number...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2013-0168

    authors: Araújo NP,Loss AC,Cordeiro-Junior DA,da Silva KR,Leite YL,Svartman M

    更新日期:2014-01-01 00:00:00

  • S1 satellite DNA as a taxonomic marker in brown frogs: molecular evidence that Rana graeca graeca and Rana graeca italica are different species.

    abstract::The brown frog Rana graeca was believed to be present in two areas, the Balkan Peninsula and the Italian Apennines. We have characterised the S1 satellite DNA family from Rana graeca graeca and compared it with that of Rana graeca italica. On Southern blots, the patterns of S1 satellite DNA bands are very different be...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g01-125

    authors: Picariello O,Feliciello I,Bellinello R,Chinali G

    更新日期:2002-02-01 00:00:00

  • Authentication of official Da-huang by sequencing and multiplex allele-specific PCR of a short maturase K gene.

    abstract::Rhubarb (official Da-huang) is an important medicinal herb in Asia. Many adulterants of official Da-huang have been discovered in Chinese markets in recent years, which has resulted in adverse effects in medicinal treatment. Here, novel molecular markers based on a short maturase K (matK) gene were developed for authe...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2012-0182

    authors: Xu G,Wang X,Liu C,Li W,Wei S,Liu Y,Cheng X,Liu J

    更新日期:2013-02-01 00:00:00

  • Development and molecular cytogenetic identification of new winter wheat--winter barley ('Martonvásári 9 kr1' - 'Igri') disomic addition lines.

    abstract::This paper describes a series of winter wheat - winter barley disomic addition lines developed from hybrids between winter wheat line Triticum aestivum L. 'Martonvásári 9 kr1' and the German 2-rowed winter barley cultivar Hordeum vulgare L. 'Igri'. The barley chromosomes in a wheat background were identified from the ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g06-134

    authors: Szakács E,Molnár-Láng M

    更新日期:2007-01-01 00:00:00

  • Evolutionary distribution of light-harvesting complex-like proteins in photosynthetic eukaryotes.

    abstract::Light-harvesting-like (LIL) proteins are low-molecular-mass membrane proteins related to the light-harvesting complexes, which form the dominant antenna system in most photosynthetic eukaryotes. To analyze the LIL protein family, we mined a number of publicly available databases to identify members of this family in a...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g09-081

    authors: Neilson JA,Durnford DG

    更新日期:2010-01-01 00:00:00

  • Large-scale development of functional markers in Brassica species.

    abstract::Numerous quantitative trait loci (QTL) have been detected in Brassica species, but fine-mapping of major QTL has advanced slowly. The development of functional markers can overcome this barrier. We used publicly available PlantGDB-assembled unique transcripts (PUTs) from Brassica species to design 7836 functional simp...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g11-042

    authors: An Z,Gao C,Li J,Fu D,Tang Z,Ortegón O

    更新日期:2011-09-01 00:00:00

  • Genetic diversity and structure in the northern populations of European hazelnut (Corylus avellana L.).

    abstract::European hazelnut (Corylus avellana L.) is a strictly cross-pollinated diploid tree species, which has its northernmost populations in Fennoscandia, and it was one of the first species to recolonize northern Europe after the last ice age. Hazelnut produces edible nuts in Finland but nowadays they are underutilized as ...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2018-0193

    authors: Tanhuanpää P,Heinonen M,Bitz L,Rokka VM

    更新日期:2019-08-01 00:00:00

  • Genetic and molecular features for hepadnavirus and plague infections in the Himalayan marmot.

    abstract::The Himalayan marmot (Marmota himalayana), a natural host and transmitter of plague, is also susceptible to the hepadnavirus infection. To reveal the genetic basis of the hepadnavirus susceptibility and the immune response to plague, we systematically characterized the features of immune genes in Himalayan marmot with...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2019-0161

    authors: Liu B,Bai L,Fu Y,Zhao S,Liu H,Wang R,Wang W,Li Y,Tao Y,Wang Z,Fan J,Liu E

    更新日期:2020-06-01 00:00:00

  • Bacterial diversity in the waterholes of the Kruger National Park: an eDNA metabarcoding approach 1.

    abstract::Bacteria are essential components of natural environments. They contribute to ecosystem functioning through roles as mutualists and pathogens for larger species, and as key components of food webs and nutrient cycles. Bacterial communities respond to environmental disturbances, and the tracking of these communities ac...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2018-0064

    authors: Farrell MJ,Govender D,Hajibabaei M,van der Bank M,Davies TJ

    更新日期:2019-03-01 00:00:00

  • Genome variation in the symbiotic nitrogen-fixing bacterium Sinorhizobium meliloti.

    abstract::Differences in genome size and gene content are among the most important signatures of microbial adaptation and genome evolution. Here, we investigated the patterns of genome variation among 10 natural strains of the symbiotic nitrogen-fixing bacterium Sinorhizobium meliloti, using pulse field gel electrophoresis (PFG...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g09-060

    authors: Guo H,Sun S,Eardly B,Finan T,Xu J

    更新日期:2009-10-01 00:00:00

  • Molecular marker analysis of hypoploid regenerants from cultures of barley x Canada wild rye.

    abstract::Canada wild rye (CWR, Elymus canadensis L., 2n = 4x = 28) is a potential source of genes for disease resistance and environmental tolerance in barley (Hordeum vulgare L., 2n = 2x = 14). Tissue cultures were initiated from immature inflorescences of CWR x 'Betzes' barley hybrids to promote CWR introgression into barley...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g96-047

    authors: Dahleen LS

    更新日期:1996-04-01 00:00:00

  • Analysis of QTLs for yield components, agronomic traits, and disease resistance in an advanced backcross population of spring barley.

    abstract::Hordeum vulgare subsp. spontaneum, the wild progenitor of barley, is a potential source of useful genetic variation for barley breeding programs. The objective of this study was to map quantitative trait loci (QTLs) in an advanced backcross population of barley. A total of 207 BC3 lines were developed using the 2-rowe...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g05-128

    authors: Li JZ,Huang XQ,Heinrichs F,Ganal MW,Röder MS

    更新日期:2006-05-01 00:00:00

  • Microsatellites in the silkworm, Bombyx mori: abundance, polymorphism, and strain characterization.

    abstract::We have isolated and characterized microsatellites (simple sequence repeat (SSR) loci) from the silkworm genome. The screening of a partial genomic library by the conventional hybridization method led to the isolation of 28 microsatellites harbouring clones. The abundance of (CA)n repeats in the silkworm genome was ak...

    journal_title:Genome

    pub_type: 杂志文章

    doi:

    authors: Reddy KD,Abraham EG,Nagaraju J

    更新日期:1999-12-01 00:00:00

  • Mitochondrial DNA variation in cultivated and wild potato species (Solanum spp.).

    abstract::The European cultivated potato, Solanum tuberosum subsp. tuberosum, has 6 related cultivated species and more than 200 wild relatives. In Solanum spp., studies of cytoplasmic organelles have been mainly confined to the plastid DNA composition of cultivated and wild species. In this study, 53 genotypes of 30 potato spe...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/g07-042

    authors: Scotti N,Cozzolino S,Cardi T

    更新日期:2007-08-01 00:00:00

  • Identification and analysis of copine/BONZAI proteins among evolutionarily diverse plant species.

    abstract::Copines are evolutionarily conserved calcium-dependent membrane-binding proteins with potentially critical biological functions. In plants, the function of these proteins has not been analyzed except for in Arabidopsis thaliana where they play critical roles in development and disease resistance. To facilitate functio...

    journal_title:Genome

    pub_type: 杂志文章

    doi:10.1139/gen-2016-0015

    authors: Zou B,Hong X,Ding Y,Wang X,Liu H,Hua J

    更新日期:2016-08-01 00:00:00