Evaluation of Chlamydia trachomatis and Neisseria gonorrhoeae detection in urine, endocervical, and vaginal specimens by a multiplexed isothermal thermophilic helicase-dependent amplification (tHDA) assay.

Abstract:

:We have developed a new research assay that combines sequence-specific sample preparation and isothermal amplification for the detection of Chlamydia trachomatis and Neisseria gonorrhoeae infections. The assay targets both the omp gene and the cryptic plasmid of C. trachomatis and the multicopy opa gene of N. gonorrhoeae, which are amplified and detected in a single reaction. We evaluated the ability of the assay to detect C. trachomatis and N. gonorrhoeae infections in first-catch urine, swab, and liquid-based cytology samples. Total agreement between the new assay and APTIMA Combo 2 varied between 95.3% and 100%, depending on the sample type and target detected. Total agreement between the new assay and BD ProbeTec varied between 96.7% and 100%, depending on the sample type and target detected. The assay has a simple work flow, and endpoint results can be achieved in 3 h, including sample preparation. The assay described here was evaluated for research use and was compared to commercially available assays.

journal_name

J Clin Microbiol

authors

O'Neil D,Doseeva V,Rothmann T,Wolff J,Nazarenko I

doi

10.1128/JCM.00952-11

subject

Has Abstract

pub_date

2011-12-01 00:00:00

pages

4121-5

issue

12

eissn

0095-1137

issn

1098-660X

pii

JCM.00952-11

journal_volume

49

pub_type

杂志文章
  • Serotyping of Canadian isolates of Treponema hyodysenteriae and description of two new serotypes.

    abstract::A total of 30 isolates of Treponema hyodysenteriae collected in the Saint-Hyacinthe (Quebec, Canada) area were serotyped by agar gel double immunodiffusion by using extracted lipopolysaccharide and hyperimmune rabbit antisera. Only 17% (5 of 30) of the isolates were typed with antisera specific for each of the seven k...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.29.12.2794-2797.1991

    authors: Li ZS,Bélanger M,Jacques M

    更新日期:1991-12-01 00:00:00

  • Isolation of influenza virus in human lung embryonated fibroblast cells (MRC-5) from clinical samples.

    abstract::Ninety-four pharyngeal swab samples corresponding to 94 patients with suspected influenza virus infection were inoculated in Madin-Darby canine kidney (MDCK) cells, the conventional cell system for the isolation of influenza virus, and in fibroblastic human embryo lung (MRC-5) cells, a cell system less commonly used f...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.33.7.1948-1949.1995

    authors: de Oña M,Melón S,de la Iglesia P,Hidalgo F,Verdugo AF

    更新日期:1995-07-01 00:00:00

  • Diagnosis of placental malaria.

    abstract::In a group of 596 delivering Ghanaian women, the sensitivities of peripheral blood thick film microscopy, ICT Malaria P.f/P.v test, and PCR in detecting microscopically confirmed placental Plasmodium falciparum infection were 42, 80, and 97%, respectively. In addition to the gross underestimation of placental malaria ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/jcm.40.1.306-308.2002

    authors: Mockenhaupt FP,Ulmen U,von Gaertner C,Bedu-Addo G,Bienzle U

    更新日期:2002-01-01 00:00:00

  • Clonal groups of Salmonella typhimurium in New York State.

    abstract::The epidemiology of 278 strains of Salmonella typhimurium isolated from 1973 to 1981 from animals in New York State was studied by using four "fingerprinting" techniques, bacteriophage type (B.R. Callow, J. Hyg. 57:346-359, 1959), biotype (J. P. Duguid, E. S. Anderson, G. A. Alfredsson, R. Barker, and D. C. Old, J. Me...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.27.4.622-627.1989

    authors: McDonough PL,Timoney JF,Jacobson RH,Khakhria R

    更新日期:1989-04-01 00:00:00

  • Characterization of Leuconostoc lactis strains from human sources.

    abstract::An examination of 23 vancomycin-resistant, streptococcuslike isolates of clinical origin revealed a group of 14 to be related to Leuconostoc lactis (type strain, CIP 102422) on the basis of chemotaxonomic studies. These isolates were initially shown to be atypical by classical biochemical tests. However, they were cha...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.28.8.1728-1733.1990

    authors: Barreau C,Wagener G

    更新日期:1990-08-01 00:00:00

  • Novel antigens of Helicobacter pylori correspond to ulcer-related antibody pattern of sera from infected patients.

    abstract::Recently, we reported that the patterns of antibodies to Helicobacter pylori protein antigens in serum may be useful for screening patients at high risk for ulcers (P. Aucher et al., J. Clin. Microbiol. 36:931-936, 1998). Here we report the identification, by a combination of electrophoretic, immunochemical, and prote...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/jcm.40.2.547-552.2002

    authors: Atanassov C,Pezennec L,d'Alayer J,Grollier G,Picard B,Fauchère JL

    更新日期:2002-02-01 00:00:00

  • Quantification of proviral load of human immunodeficiency virus type 2 subtypes A and B using real-time PCR.

    abstract::We have developed and evaluated a new method to quantify human immunodeficiency virus type 2 (HIV-2) proviral DNA based on LightCycler real-time PCR. The assay has a detection limit of 5 copies/10(5) peripheral blood mononuclear cells (PBMC) and is insensitive to HIV-2 strain variability: HIV-2 subtypes A and B are bo...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.39.12.4264-4268.2001

    authors: Damond F,Descamps D,Farfara I,Telles JN,Puyeo S,Campa P,Leprêtre A,Matheron S,Brun-Vezinet F,Simon F

    更新日期:2001-12-01 00:00:00

  • Usefulness of High-Quality Core Genome Single-Nucleotide Variant Analysis for Subtyping the Highly Clonal and the Most Prevalent Salmonella enterica Serovar Heidelberg Clone in the Context of Outbreak Investigations.

    abstract::Salmonella enterica serovar Heidelberg is the second most frequently occurring serovar in Quebec and the third-most prevalent in Canada. Given that conventional pulsed-field gel electrophoresis (PFGE) subtyping for common Salmonella serovars, such as S. Heidelberg, yields identical subtypes for the majority of isolate...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.02200-15

    authors: Bekal S,Berry C,Reimer AR,Van Domselaar G,Beaudry G,Fournier E,Doualla-Bell F,Levac E,Gaulin C,Ramsay D,Huot C,Walker M,Sieffert C,Tremblay C

    更新日期:2016-02-01 00:00:00

  • Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei.

    abstract::A collection of 147 isolates of Burkholderia pseudomallei, B. mallei, and B. thailandensis was characterized by multilocus sequence typing (MLST). The 128 isolates of B. pseudomallei, the causative agent of melioidosis, were obtained from diverse geographic locations, from humans and animals with disease, and from the...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/jcm.41.5.2068-2079.2003

    authors: Godoy D,Randle G,Simpson AJ,Aanensen DM,Pitt TL,Kinoshita R,Spratt BG

    更新日期:2003-05-01 00:00:00

  • Identification of Pneumocystis carinii f. sp. hominis gene sequences in filtered air in hospital environments.

    abstract::To evaluate the risk of a nosocomial spread of Pneumocystis carinii f. sp. hominis (P. carinii hominis), air filter samples from rooms of P. carinii pneumonia (PCP) patients, adjacent corridors, and other hospital environments have been investigated for the presence of P. carinii hominis. Amplified DNA from air filter...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.36.6.1737-1740.1998

    authors: Olsson M,Lidman C,Latouche S,Björkman A,Roux P,Linder E,Wahlgren M

    更新日期:1998-06-01 00:00:00

  • Cellular fatty acids of Brucella canis and Brucella suis.

    abstract::The cellular fatty acid composition of Brucella canis and Brucella suis was determined by gas-liquid chromatography. The presence of relatively large amounts of a 19-carbon cyclopropane fatty acid in B. suis was a major distinguishing feature between these organisms. The gas-liquid chromatography test for cellular fat...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.14.1.111-112.1981

    authors: Dees SB,Hollis DG,Weaver RE,Moss CW

    更新日期:1981-07-01 00:00:00

  • Characterization of Streptococcus agalactiae strains by randomly amplified polymorphic DNA analysis.

    abstract::A collection of 54 unrelated Streptococcus agalactiae strains isolated from cerebrospinal fluid samples from neonates and 60 unrelated strains isolated from carriers that had been previously studied by multilocus enzyme electrophoresis (R. Quentin, H. Huet, F.-S. Wang, P. Geslin, A. Goudeau, and R. K. Selander, J. Cli...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.35.10.2573-2579.1997

    authors: Chatellier S,Ramanantsoa C,Harriau P,Rolland K,Rosenau A,Quentin R

    更新日期:1997-10-01 00:00:00

  • Reverse transcription-PCR detection of hepatitis G virus.

    abstract::Hepatitis G virus (HGV) was recently identified as a new member of the Flaviviridae, but its clinical significance is still unclear. Since no immunoassay for the diagnosis of HGV is available, we developed a sensitive reverse transcription-PCR (RT-PCR) assay to facilitate the detection of the viral genome by mass scre...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.34.11.2660-2664.1996

    authors: Schlueter V,Schmolke S,Stark K,Hess G,Ofenloch-Haehnle B,Engel AM

    更新日期:1996-11-01 00:00:00

  • Colistin-oxolinic acid-blood agar: a new selective medium for streptococci.

    abstract::The development and evaluation of a new selective medium (colistin-oxolinic acid-blood agar) for streptococci is described. Streptococci of medical and veterinary importance grew well on the medium. Gram-negative organisms, staphylococci. Bacillus spp., and coryneforms are all inhibited. It was concluded that the medi...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.19.1.4-7.1984

    authors: Petts DN

    更新日期:1984-01-01 00:00:00

  • Enzymatic and immunological characterization of the Mycobacterium fortuitum complex.

    abstract::The arylsulfatase isozymes of Mycobacterium fortuitum, M. peregrinum, M. chelonei subsp. chelonei, and M. chelonei subsp. abscessus were examined to determine the isozymal and immunological relationship among the members of the M. fortuitum complex. Cell extracts were subjected to electrophoresis on agarose and polyac...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:

    authors: Binko BP,Bartholomew WR

    更新日期:1978-08-01 00:00:00

  • Rapid and sensitive assay for detection of enterotoxigenic Bacteroides fragilis.

    abstract::Bacteroides fragilis is an obligatory anaerobic, gram-negative bacterium found among the normal intestinal flora of humans. Enterotoxigenic strains of B. fragilis (ETBF) have been associated with diarrheal diseases in humans and animals. The enterotoxin of ETBF induces fluid changes in ligated intestinal segments and ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.36.12.3545-3548.1998

    authors: Zhang G,Weintraub A

    更新日期:1998-12-01 00:00:00

  • Septic arthritis of the knee due to Fusobacterium necrophorum.

    abstract::Gram-negative, anaerobic bacilli are unusual organisms to be isolated in cases of acute septic arthritis. We report the isolation of Fusobacterium necrophorum from joint aspirate in a case of acute septic arthritis, which presented 3 weeks after the drainage of a dental abscess. ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.42.7.3369-3370.2004

    authors: Sonsale PD,Philipson MR,Bowskill J

    更新日期:2004-07-01 00:00:00

  • Infection of a hip prosthesis by Actinomyces naeslundii.

    abstract::We present the case of a 77-year-old woman who developed an Actinomyces naeslundii infection of a hip prosthesis. The isolate grew well aerobically with 5% CO(2). Possible diagnostic problems may arise in the microbiological laboratory because aerobic growth is not sufficiently accounted for in some of the traditional...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.38.2.929-930.2000

    authors: Wüst J,Steiger U,Vuong H,Zbinden R

    更新日期:2000-02-01 00:00:00

  • Temporal changes in outer surface proteins A and C of the lyme disease-associated spirochete, Borrelia burgdorferi, during the chain of infection in ticks and mice.

    abstract::The Lyme disease-associated spirochete, Borrelia burgdorferi, is maintained in enzootic cycles involving Ixodes ticks and small mammals. Previous studies demonstrated that B. burgdorferi expresses outer surface protein A (OspA) but not OspC when residing in the midgut of unfed ticks. However, after ticks feed on blood...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:

    authors: Schwan TG,Piesman J

    更新日期:2000-01-01 00:00:00

  • Development and evaluation of a coculture technique for identification of anaerobic organisms.

    abstract::We investigated a method to reduce oxygen tension and produce anaerobic conditions conveniently by coculture with a nonfermentative organism. The biochemical reactions of 94 strains representing 41 different species were determined using prereduced media and gas chromatography according to standard methods. The standa...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.19.2.215-217.1984

    authors: Hussain Z,Bürger H,Lannigan R,Groves DJ

    更新日期:1984-02-01 00:00:00

  • Intravitam diagnosis of human rabies by PCR using saliva and cerebrospinal fluid.

    abstract::An optimized reverse transcription (RT)-PCR protocol for the intravitam detection of rabies virus genomic RNA was tested with clinical samples obtained from 28 patients suspected of having rabies, 9 of whom were confirmed to have had rabies by postmortem examination. RT-PCR using saliva combined with an immunofluoresc...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.36.4.1117-1121.1998

    authors: Crepin P,Audry L,Rotivel Y,Gacoin A,Caroff C,Bourhy H

    更新日期:1998-04-01 00:00:00

  • Nested duplex PCR to detect Bordetella pertussis and Bordetella parapertussis and its application in diagnosis of pertussis in nonmetropolitan Southeast Queensland, Australia.

    abstract::A duplex PCR to detect Bordetella pertussis and Bordetella parapertussis was developed with the insertion sequences IS481 (B. pertussis) and IS1001 (B. parapertussis) and evaluated with specimens from 520 consecutive patients presenting with possible pertussis. No culture-positive-PCR-negative results occurred, giving...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.37.3.606-610.1999

    authors: Farrell DJ,Daggard G,Mukkur TK

    更新日期:1999-03-01 00:00:00

  • Evaluation of the Sofia S. pneumoniae FIA for Detection of Pneumococcal Antigen in Patients with Bloodstream Infection.

    abstract::The usefulness of pneumococcal urinary antigen tests (UATs) in severe pneumococcal infection relies heavily on the performance in bacteremic patients. Fluorescence technology and automatic reading of test results may improve UAT performance. We evaluated the automatically read Sofia S. pneumoniae FIA for diagnosing pn...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.01535-18

    authors: Olofsson E,Özenci V,Athlin S

    更新日期:2019-07-26 00:00:00

  • Recurrent bacteremic peritonitis caused by Enterococcus cecorum in a patient with liver cirrhosis.

    abstract::Enterococcus cecorum (formerly Streptococcus cecorum), originally isolated from poultry intestines, has rarely been encountered in human diseases. A 60-year-old man with liver cirrhosis and hepatocellular carcinoma developed peritonitis on the seventh day of his hospitalization. Cultures of one blood sample and one as...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:

    authors: Hsueh PR,Teng LJ,Chen YC,Yang PC,Ho SW,Luh KT

    更新日期:2000-06-01 00:00:00

  • Impact of prolonged incubation on disk diffusion susceptibility test results for Staphylococcus aureus.

    abstract::Because strains of Staphylococcus aureus that are resistant to penicillinase-resistant penicillins may be difficult to detect in the clinical laboratory, a variety of changes in methodology have been suggested to increase their detection. In 1984, the West Los Angeles Veterans Administration Medical Center experienced...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.25.5.840-844.1987

    authors: Mulligan ME,Citron DM,Kwok RY,Wheelock JP,Farrohi FK,Hindler JA,Johnston L

    更新日期:1987-05-01 00:00:00

  • Endocarditis caused by Cardiobacterium valvarum.

    abstract::A fastidious, gram-negative bacterium was isolated from the blood of a 51-year-old man who had acute infectious endocarditis (IE). Characterization of the organism through phenotypic and genotypic analyses revealed the causative role of Cardiobacterium valvarum. This is the third reported case of IE caused by C. valva...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.44.2.657-658.2006

    authors: Bothelo E,Gouriet F,Fournier PE,Roux V,Habib G,Thuny F,Metras D,Raoult D,Casalta JP

    更新日期:2006-02-01 00:00:00

  • Characterization of a coronavirus isolated from a diarrheic foal.

    abstract::A coronavirus was isolated from feces of a diarrheic foal and serially propagated in human rectal adenocarcinoma (HRT-18) cells. Antigenic and genomic characterizations of the virus (isolate NC99) were based on serological comparison with other avian and mammalian coronaviruses and sequence analysis of the nucleocapsi...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.38.12.4523-4526.2000

    authors: Guy JS,Breslin JJ,Breuhaus B,Vivrette S,Smith LG

    更新日期:2000-12-01 00:00:00

  • Detection of Helicobacter pylori gene expression in human gastric mucosa.

    abstract::Mucosal and systemic immunologic recognition of cagA by Helicobacter pylori-infected individuals is associated with peptic ulcer disease; however, in the laboratory, expression of cagA is subject to artificial conditions which may not accurately reflect the conditions in host tissues. Gastric antral and body biopsy sp...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.33.1.28-32.1995

    authors: Peek RM Jr,Miller GG,Tham KT,Pérez-Pérez GI,Cover TL,Atherton JC,Dunn GD,Blaser MJ

    更新日期:1995-01-01 00:00:00

  • Outbreak of Saccharomyces cerevisiae subtype boulardii fungemia in patients neighboring those treated with a probiotic preparation of the organism.

    abstract::We report an outbreak of Saccharomyces cerevisiae subtype boulardii fungemia among three intensive care unit roommates of patients receiving lyophilized preparations of this fungus. The fungemia was probably due to central venous catheter contamination and resolved after fluconazole treatment. The need for stringent a...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章,评审

    doi:10.1128/jcm.41.11.5340-5343.2003

    authors: Cassone M,Serra P,Mondello F,Girolamo A,Scafetti S,Pistella E,Venditti M

    更新日期:2003-11-01 00:00:00

  • Simultaneous detection and identification of Candida, Aspergillus, and Cryptococcus species by reverse line blot hybridization.

    abstract::We report on a reverse line blot (RLB) assay, utilizing fungal species-specific oligonucleotide probes to hybridize with internal transcribed spacer 2 region sequences amplified using a nested panfungal PCR. Reference and clinical strains of 16 Candida species (116 strains), Cryptococcus neoformans (five strains of Cr...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.44.3.876-880.2006

    authors: Playford EG,Kong F,Sun Y,Wang H,Halliday C,Sorrell TC

    更新日期:2006-03-01 00:00:00