Alpha-Dystrobrevin and its associated proteins in human promyelocytic leukemia cells induced to apoptosis.

Abstract:

:Dystrobrevin is a dystrophin-related component of the dystrophin-associated protein complex (DAPC). Using alpha-dystrobrevin as indicator, we aimed to elucidate the interaction network of the DAPC with other proteins during apoptosis of promyelocytic HL-60 cells. The precise role(s) of DBs are not known, but we and others have shown that they play a role in intracellular signal transduction and cellular organization. Apoptosis was induced with etoposide in the absence or presence of Z-VAD to block caspase activity, and we then followed the cellular distribution of α-DB and its association with other proteins, using confocal imaging and cell fractions analyses after immune-precipitation with anti-α-DB and mass spectrometry. Confocal imaging revealed distinct spatial relocalizations of α-DB between the cell membrane, cytosol and nucleus after induction of apoptosis. The expression levels of the identified proteins were evaluated with computer-assisted image analysis of the gels. We thus identified associations with structural and transport proteins (tropomyosin, myosin), membrane (ADAM21, syntrophin), ER-Golgi (TGN51, eIF38) and nuclear (Lamins, ribonucleoprotein C1/C2) proteins. These results suggest that apoptosis-induction in HL-60 cells involves not only classical markers of apoptosis but also a network α-DB-associated proteins at the cell membrane, the cytoplasm and nucleus, affecting key cellular transport processes and cellular structure.

journal_name

J Proteomics

journal_title

Journal of proteomics

authors

Navakauskienė R,Treigytė G,Borutinskaitė VV,Matuzevičius D,Navakauskas D,Magnusson KE

doi

10.1016/j.jprot.2012.03.041

subject

Has Abstract

pub_date

2012-06-18 00:00:00

pages

3291-303

issue

11

eissn

1874-3919

issn

1876-7737

pii

S1874-3919(12)00192-3

journal_volume

75

pub_type

杂志文章
  • Quantitative proteomics reveals a role of JAZ7 in plant defense response to Pseudomonas syringae DC3000.

    abstract::Jasmonate ZIM-domain (JAZ) proteins are key transcriptional repressors regulating various biological processes. Although many studies have studied JAZ proteins by genetic and biochemical analyses, little is known about JAZ7-associated global protein networks and how JAZ7 contributes to bacterial pathogen defense. In t...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.01.002

    authors: Zhang T,Meng L,Kong W,Yin Z,Wang Y,Schneider JD,Chen S

    更新日期:2018-03-20 00:00:00

  • Molecular mass sorting of proteome using hollow fiber flow field-flow fractionation for proteomics.

    abstract::Hollow fiber flow field-flow fractionation (HF FlFFF) has been demonstrated as a tool for pre-fractionating proteomes by differences in molecular mass (Mr), where the resulting protein fractions are subsequently digested and analyzed by shotgun proteomics using two-dimensional liquid chromatography-electrospray ioniza...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2008.02.001

    authors: Kim KH,Kang D,Koo HM,Moon MH

    更新日期:2008-04-30 00:00:00

  • Method and platform standardization in MRM-based quantitative plasma proteomics.

    abstract:UNLABELLED:There exists a growing demand in the proteomics community to standardize experimental methods and liquid chromatography-mass spectrometry (LC/MS) platforms in order to enable the acquisition of more precise and accurate quantitative data. This necessity is heightened by the evolving trend of verifying and va...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.07.026

    authors: Percy AJ,Chambers AG,Yang J,Jackson AM,Domanski D,Burkhart J,Sickmann A,Borchers CH

    更新日期:2013-12-16 00:00:00

  • Serine protease isoforms in Gloydius intermedius venom: Full sequences, molecular phylogeny and evolutionary implications.

    abstract::Nine distinct venom serine proteases (vSPs) of Gloydius intermedius were studied by transcriptomic, sub-proteomic and phylogenetic analyses. Their complete amino acid sequences were deduced after Expression Sequence Tag (EST) analyses followed by cDNA cloning and sequencing. These vSPs appear to be paralogs and contai...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.05.024

    authors: Yang ZM,Yu H,Liu ZZ,Pei JZ,Yang YE,Yan SX,Zhang C,Zhao WL,Wang ZZ,Wang YM,Tsai IH

    更新日期:2017-07-05 00:00:00

  • Recombinant glycoproteins: The impact of cell lines and culture conditions on the generation of protein species.

    abstract:UNLABELLED:Glycosylation is the most complex post-translational modification. Thus, it contributes to versatile chemical compositions of proteins, leading to high amounts of protein species. The structural heterogeneity of glycoproteins was also described by the definition of glycoforms. We therefore introduced a new t...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.08.011

    authors: Rosenlöcher J,Sandig G,Kannicht C,Blanchard V,Reinke SO,Hinderlich S

    更新日期:2016-02-16 00:00:00

  • Systematic identification of mitochondrial lysine succinylome in silkworm (Bombyx mori) midgut during the larval gluttonous stage.

    abstract::Lysine succinylation is a newly identified protein post-translational modification (PTM) of lysine residues. Increasing evidences demonstrate that this modification is prevalent in mitochondria and regulates many vital cellular processes, especially metabolism. Here, we determined the succinylome of the silkworm (Bomb...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.12.019

    authors: Chen J,Li F,Liu Y,Shen W,Du X,He L,Meng Z,Ma X,Wang Y

    更新日期:2018-03-01 00:00:00

  • Reductive chemical release of N-glycans as 1-amino-alditols and subsequent 9-fluorenylmethyloxycarbonyl labeling for MS and LC/MS analysis.

    abstract::Glycoproteins play pivotal roles in a series of biological processes and their glycosylation patterns need to be structurally and functionally characterized. However, the lack of versatile methods to release N-glycans as functionalized forms has been undermining glycomics studies. Here a novel method is developed for ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.06.002

    authors: Wang C,Qiang S,Jin W,Song X,Zhang Y,Huang L,Wang Z

    更新日期:2018-09-15 00:00:00

  • The proteomics of heavy metal hyperaccumulation by plants.

    abstract::Hyperaccumulators are distinguished from non-hyperaccumulators on the basis of their capacity to extract heavy metal ions from the soil, their more efficient root-to-shoot translocation of these ions and their greater ability to detoxify and sequester heavy metals in the shoot. The understanding of the mechanisms unde...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2012.12.006

    authors: Visioli G,Marmiroli N

    更新日期:2013-02-21 00:00:00

  • Proteomic analysis and protein carbonylation profile in trained and untrained rat muscles.

    abstract::Understanding the relationship between physical exercise, reactive oxygen species and skeletal muscle modification is important in order to better identify the benefits or the damages that appropriate or inappropriate exercise can induce. Unbalanced ROS levels can lead to oxidation of cellular macromolecules and a maj...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.10.017

    authors: Magherini F,Abruzzo PM,Puglia M,Bini L,Gamberi T,Esposito F,Veicsteinas A,Marini M,Fiorillo C,Gulisano M,Modesti A

    更新日期:2012-01-04 00:00:00

  • MHC class I presented antigens from malignancies: A perspective on analytical characterization & immunogenicity.

    abstract::The field of cancer immunotherapy has expanded rapidly in the past few years, with many new approaches entering the clinic for T cell mediated killing of tumors. Several of these clinical approaches involve the exploitation of a CD8 + T cell response against MHC I presented tumor antigens. Here, we describe the types ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2018.04.021

    authors: Schmidt M,Lill JR

    更新日期:2019-01-16 00:00:00

  • Clinical use of phosphorylated proteins in blood serum analysed by immobilised metal ion affinity chromatography and mass spectrometry.

    abstract::The process of protein phosphorylation in cells is well studied in the context of a wide range of biologic functions such as signalling, cell cycle, cell growth and differentiation, and others. In contrast, little progress has been made in the investigation of protein phosphorylation specifically in blood. Here, we fo...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章,多中心研究

    doi:10.1016/j.jprot.2012.02.015

    authors: Jaros JA,Guest PC,Ramoune H,Rothermundt M,Leweke FM,Martins-de-Souza D,Bahn S

    更新日期:2012-12-05 00:00:00

  • SWATH-MS based quantitative proteomics analysis to evaluate the antileishmanial effect of Commiphora wightii- Guggul and amphotericin B on a clinical isolate of Leishmania donovani.

    abstract::Drug resistance and relapse after treatment of visceral leishmaniasis (VL) with the chemotherapeutic drugs has impeded the VL elimination programme especially, in the endemic region of Bihar, India. Currently, Antimonials (Sbv) have been rendered obsolete (Bihar) as frequent treatment failure and relapse in Sbv treate...

    journal_title:Journal of proteomics

    pub_type: 已发布勘误

    doi:10.1016/j.jprot.2020.104017

    authors: Routaray CB,Bhor R,Bai S,Kadam NS,Jagtap S,Doshi PJ,Sundar S,Sawant S,Kulkarni MJ,Pai K

    更新日期:2021-02-10 00:00:00

  • Proteome characterization of small extracellular vesicles from spared nerve injury model of neuropathic pain.

    abstract::Exosomes are 30-150 nm extracellular vesicles mediating intercellular communication. Disease states can alter exosome composition affecting the message carried and thereby, its functional impact. The objective of this study was to identify proteins present in these vesicles in a mouse model of neuropathic pain induced...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103540

    authors: Jean-Toussaint R,Tian Y,Chaudhuri AD,Haughey NJ,Sacan A,Ajit SK

    更新日期:2020-01-16 00:00:00

  • Leaf proteome profiling of transgenic mint infected with Alternaria alternata.

    abstract:UNLABELLED:The genus Mentha has been widely used in food, flavor, culinary, cosmetic and pharmaceutical industries. Substantial damage to this crop happened regularly due to environmental stresses like metal toxicity and pathogen attack. Here, an approach has been taken to raise transgenic mint over-expressing γ-glutam...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.01.020

    authors: Sinha R,Bhattacharyya D,Majumdar AB,Datta R,Hazra S,Chattopadhyay S

    更新日期:2013-11-20 00:00:00

  • Comparative phosphoproteomic analysis of intestinal phosphorylated proteins in active versus aestivating sea cucumbers.

    abstract:UNLABELLED:The sea cucumber Apostichopus japonicus is becoming an excellent model marine invertebrate for studies of environmentally-induced aestivation. Reversible protein phosphorylation as a regulatory mechanism in aestivation is known for some terrestrial aestivators but has never before been documented in sea cucu...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.09.016

    authors: Chen M,Zhu A,Storey KB

    更新日期:2016-03-01 00:00:00

  • Design and expression of a QconCAT protein to validate Hi3 protein quantification of influenza vaccine antigens.

    abstract:UNLABELLED:Quantification of the antigens hemagglutinin and neuraminidase in influenza vaccines has been reported using an antibody-free liquid chromatography-mass spectrometry (LC-MS) based method known as MS(E) "Hi3". This approach is based on the average signal intensity of the three most intense tryptic peptides re...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.06.024

    authors: Smith DG,Gingras G,Aubin Y,Cyr TD

    更新日期:2016-09-02 00:00:00

  • Identification and validation of platelet low biological variation proteins, superior to GAPDH, actin and tubulin, as tools in clinical proteomics.

    abstract:UNLABELLED:Accurate biomarker quantification requires carefully chosen normalisation procedures. When single proteins are used as loading controls (LCs), it is crucial that their expressional stability must be known. Platelets are an important biomarker source, especially for neurological diseases. We performed a syste...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2013.10.015

    authors: Baumgartner R,Umlauf E,Veitinger M,Guterres S,Rappold E,Babeluk R,Mitulović G,Oehler R,Zellner M

    更新日期:2013-12-06 00:00:00

  • Comparative proteomic analysis of four Bacillus clausii strains: proteomic expression signature distinguishes protein profile of the strains.

    abstract::A comparative proteomic approach, using two dimensional gel electrophoresis and mass spectrometry, has been developed to compare and elucidate the differences among the cellular proteomes of four closely related isogenic O/C, SIN, N/R and T, B. clausii strains during both exponential and stationary phases of growth. I...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.06.032

    authors: Lippolis R,Gnoni A,Abbrescia A,Panelli D,Maiorano S,Paternoster MS,Sardanelli AM,Papa S,Gaballo A

    更新日期:2011-11-18 00:00:00

  • Targeted mass spectrometry for Serum Amyloid A (SAA) isoform profiling in sequential blood samples from experimentally Staphylococcus aureus infected pigs.

    abstract::Serum amyloid A (SAA) is a well-described acute phase protein induced during the acute phase response (APR) to infection. Four isoform specific genes are found in most mammals. Depending on species, SAA3 and SAA4 are generally preferentially expressed extrahepatically whereas SAA1 and SAA2 are hepatic isoforms dominat...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103904

    authors: Leuchsenring AB,Karlsson C,Bundgaard L,Malmström J,Heegaard PMH

    更新日期:2020-09-15 00:00:00

  • Differential impacts of individual and combined exposures of deoxynivalenol and zearalenone on the HepaRG human hepatic cell proteome.

    abstract::Numerous surveys have highlighted the natural co-occurrence of deoxynivalenol (DON) and zearalenone (ZEA) mycotoxins in food and feed. Nevertheless, data regarding cellular mechanisms involved in response to their individual and simultaneous exposures are lacking. In this study, in order to analyze how low mycotoxin d...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.11.025

    authors: Smith MC,Timmins-Schiffman E,Coton M,Coton E,Hymery N,Nunn BL,Madec S

    更新日期:2018-02-20 00:00:00

  • An MRM-based workflow for quantifying cardiac mitochondrial protein phosphorylation in murine and human tissue.

    abstract::The regulation of mitochondrial function is essential for cardiomyocyte adaptation to cellular stress. While it has long been understood that phosphorylation regulates flux through metabolic pathways, novel phosphorylation sites are continually being discovered in all functionally distinct areas of the mitochondrial p...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.02.014

    authors: Lam MP,Scruggs SB,Kim TY,Zong C,Lau E,Wang D,Ryan CM,Faull KF,Ping P

    更新日期:2012-08-03 00:00:00

  • Qualitative and quantitative peptidomic and proteomic approaches to phenotyping chicken semen.

    abstract:UNLABELLED:Understanding of the avian male gamete biology is essential to improve the conservation of genetic resources and performance in farming. In this study, the chicken semen peptidome/proteome and the molecular phenotype related to sperm quality were investigated. Spermatozoa (SPZ) and corresponding seminal plas...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.07.024

    authors: Labas V,Grasseau I,Cahier K,Gargaros A,Harichaux G,Teixeira-Gomes AP,Alves S,Bourin M,Gérard N,Blesbois E

    更新日期:2015-01-01 00:00:00

  • A gel-based proteomic method reveals several protein pathway abnormalities in fetal Down syndrome brain.

    abstract::A large series of protein pathway components have been shown to be dysregulated in Down syndrome (DS) brain. No information about pathomechanisms linked to the trisomic state can be obtained from adult DS brain, however, as neurodegeneration occurs from the fourth decade. The aim of the study was to search for protein...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.01.009

    authors: Sun Y,Dierssen M,Toran N,Pollak DD,Chen WQ,Lubec G

    更新日期:2011-04-01 00:00:00

  • Use of ribosomal proteins as biomarkers for identification of Flavobacterium psychrophilum by MALDI-TOF mass spectrometry.

    abstract::Matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF-MS) is a rapid methodology for identification of bacteria that is increasingly used in diagnostic laboratories. This work aimed at evaluating the potential of MALDI-TOF-MS for identification of the main serotypes of Flavobacterium ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.09.007

    authors: Fernández-Álvarez C,Torres-Corral Y,Santos Y

    更新日期:2018-01-06 00:00:00

  • The egg white and yolk interactomes as gleaned from extensive proteomic data.

    abstract::Combinatorial peptide ligand libraries have recently allowed considerable advances in the mapping of chicken egg yolk and white proteomics. Data from literature have been regrouped and elaborated for network and pathway analyses in order to convey a unified view of these proteomes. Redundant proteins were excluded, wh...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2010.01.002

    authors: D'Alessandro A,Righetti PG,Fasoli E,Zolla L

    更新日期:2010-03-10 00:00:00

  • A proteomic analysis of the mechanism of action of naphthoimidazoles in Trypanosoma cruzi epimastigotes in vitro.

    abstract::Chagas' disease, caused by the protozoan Trypanosoma cruzi, is endemic in Latin America, which current treatment presents variable efficacy and serious side effects. A previous screening of naphthoquinone derivatives pointed to the naphthoimidazoles N1, N2 and N3 as the most active compounds against T. cruzi. In this ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2010.07.002

    authors: Menna-Barreto RF,Beghini DG,Ferreira AT,Pinto AV,De Castro SL,Perales J

    更新日期:2010-11-10 00:00:00

  • Proteomic analysis of human dental cementum and alveolar bone.

    abstract:UNLABELLED:Dental cementum (DC) is a bone-like tissue covering the tooth root and responsible for attaching the tooth to the alveolar bone (AB) via the periodontal ligament (PDL). Studies have unsuccessfully tried to identify factors specific to DC versus AB, in an effort to better understand DC development and regener...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.08.016

    authors: Salmon CR,Tomazela DM,Ruiz KG,Foster BL,Paes Leme AF,Sallum EA,Somerman MJ,Nociti FH Jr

    更新日期:2013-10-08 00:00:00

  • The correlation between cellular size and protein expression levels--normalization for global protein profiling.

    abstract::An automated image analysis system was used for protein quantification of 1862 human proteins in 47 cancer cell lines and 12 clinical cell samples using cell microarrays and immunohistochemistry. The analysis suggests that most proteins are expressed in a cell size dependent manner, and that normalization is required ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2008.06.014

    authors: Lundberg E,Gry M,Oksvold P,Kononen J,Andersson-Svahn H,Pontén F,Uhlén M,Asplund A

    更新日期:2008-10-07 00:00:00

  • Proteomic analysis of wheat contrasting genotypes reveals the interplay between primary metabolic and regulatory pathways in anthers under drought stress.

    abstract::Reproductive stage is very sensitive to various forms of environmental stresses such as drought stress. The proteomic analysis of anther during pollen development in response to drought stress was performed using a label-free quantitative shotgun proteomic technique to define the underlying molecular principles in two...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103895

    authors: Mehri N,Fotovat R,Mirzaei M,Fard EM,Parsamatin P,Hasan MT,Wu Y,Ghaffari MR,Salekdeh GH

    更新日期:2020-08-30 00:00:00

  • Mass spectrometry imaging for drug distribution studies.

    abstract::Since its introduction mass spectrometry imaging (MSI) has proven to be a powerful tool for the localization of molecules in biological tissues. In drug discovery and development, understanding the distribution of both drug and its metabolites is of critical importance. Traditional methods suffer from a lack of spatia...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2012.07.028

    authors: Prideaux B,Stoeckli M

    更新日期:2012-08-30 00:00:00