Targeted systems biology profiling of tomato fruit reveals coordination of the Yang cycle and a distinct regulation of ethylene biosynthesis during postclimacteric ripening.

Abstract:

:The concept of system 1 and system 2 ethylene biosynthesis during climacteric fruit ripening was initially described four decades ago. Although much is known about fruit development and climacteric ripening, little information is available about how ethylene biosynthesis is regulated during the postclimacteric phase. A targeted systems biology approach revealed a novel regulatory mechanism of ethylene biosynthesis of tomato (Solanum lycopersicum) when fruit have reached their maximal ethylene production level and which is characterized by a decline in ethylene biosynthesis. Ethylene production is shut down at the level of 1-aminocyclopropane-1-carboxylic acid oxidase. At the same time, 1-aminocyclopropane-1-carboxylic acid synthase activity increases. Analysis of the Yang cycle showed that the Yang cycle genes are regulated in a coordinated way and are highly expressed during postclimacteric ripening. Postclimacteric red tomatoes on the plant showed only a moderate regulation of 1-aminocyclopropane-1-carboxylic acid synthase and Yang cycle genes compared with the regulation in detached fruit. Treatment of red fruit with 1-methylcyclopropane and ethephon revealed that the shut-down mechanism in ethylene biosynthesis is developmentally programmed and only moderately ethylene sensitive. We propose that the termination of autocatalytic ethylene biosynthesis of system 2 in ripe fruit delays senescence and preserves the fruit until seed dispersal.

journal_name

Plant Physiol

journal_title

Plant physiology

authors

Van de Poel B,Bulens I,Markoula A,Hertog ML,Dreesen R,Wirtz M,Vandoninck S,Oppermann Y,Keulemans J,Hell R,Waelkens E,De Proft MP,Sauter M,Nicolai BM,Geeraerd AH

doi

10.1104/pp.112.206086

subject

Has Abstract

pub_date

2012-11-01 00:00:00

pages

1498-514

issue

3

eissn

0032-0889

issn

1532-2548

pii

pp.112.206086

journal_volume

160

pub_type

杂志文章
  • Observations on the mechanism of copper damage in chlorella.

    abstract::Addition of excess copper to nongrowing cells of a normal, green Chlorella caused a reduction in total pigments and a blue shift of chlorophyll absorption, concurrent with the inhibition of photosynthesis. Chlorophylless yellow and white mutant strains of the same alga showed a rise in nonspecific absorption (i.e., ch...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.46.2.183

    authors: Gross RE,Pugno P,Dugger WM

    更新日期:1970-08-01 00:00:00

  • TWS1, a Novel Small Protein, Regulates Various Aspects of Seed and Plant Development.

    abstract::Small proteins have long been overlooked due to their poor annotation and the experimental challenges they pose. However, in recent years, their role in various processes has started to emerge, opening new research avenues. Here, we present the isolation and characterization of two allelic mutants, twisted seed1-1 (tw...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.16.00915

    authors: Fiume E,Guyon V,Remoué C,Magnani E,Miquel M,Grain D,Lepiniec L

    更新日期:2016-11-01 00:00:00

  • Phytoalexin Elicitor Activity of Carbohydrates from Phytophthora megasperma f.sp. glycinea and Other Sources.

    abstract::Three unique classes of carbohydrates were isolated from the hyphal cell walls of Phytophthora megasperma f.sp. glycinea (Pmg) and compared with other substances for their activity as elicitors of the phytoalexin glyceollin in soybean tissues. Glucomannans extracted from cell walls with soybean beta-1,3-endoglucanase ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.71.3.466

    authors: Keen NT,Yoshikawa M,Wang MC

    更新日期:1983-03-01 00:00:00

  • Isolation of Intact and Functional Chloroplasts from Mesophyll and Bundle Sheath Protoplasts of the C(4) Plant Panicum miliaceum.

    abstract::A procedure is described for isolating and purifying mesophyll protoplasts and bundle sheath protoplasts of the C(4) plant Panicum miliaceum. Following enzymic digestion of leaf tissue, mesophyll protoplasts and bundle sheath protoplasts are released and purified by density centrifugation. The lower density of mesophy...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.63.5.821

    authors: Edwards GE

    更新日期:1979-05-01 00:00:00

  • A Ca/H Antiport System Driven by the Proton Electrochemical Gradient of a Tonoplast H-ATPase from Oat Roots.

    abstract::Two types of ATP-dependent calcium (Ca(2+)) transport systems were detected in sealed microsomal vesicles from oat roots. Approximately 80% of the total Ca(2+) uptake was associated with vesicles of 1.11 grams per cubic centimeter and was insensitive to vanadate or azide, but inhibited by NO(3) (-). The remaining 20% ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.79.4.1111

    authors: Schumaker KS,Sze H

    更新日期:1985-12-01 00:00:00

  • Enhancement of protein synthesis in isolated chloroplasts by irradiation of fern gametophytes with blue light.

    abstract::Irradiation of the gametophytes of Pteridium aquilinum with blue light led to a nearly 5-fold increase in the amino acid-incorporating activity of isolated chloroplasts. The blue light effect was not due to increased synthesis of ATP or other energy donors by the chloroplasts but was probably related to an increased p...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.48.1.82

    authors: Raghavan V,Demaggio AE

    更新日期:1971-07-01 00:00:00

  • Inhibition by auxins of 4-methyleneglutamic Acid synthesis in tissue cultures of peanut seeds.

    abstract::Callus cultures of peanut (Arachis hypogaea L. cv Valencia Tennessee Red) cotyledons grown on Linsmaier and Skoog medium containing normal levels of auxin and cytokinin do not synthesize either 4-methyl-eneglutamic acid or 4-methyleneglutamine, which nonprotein amino acids are normally found in significant amounts in ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.76.1.161

    authors: Winter HC,Dekker EE

    更新日期:1984-09-01 00:00:00

  • Light-Dependent Tyrosine Phosphorylation in the Cyanobacterium Prochlorothrix hollandica.

    abstract::A light-dependent tyrosine kinase activity is present in soluble extracts from the cyanobacterium Prochlorothrix hollandica. The substrate of this tyrosine kinase activity is a soluble 88-kD protein that is phosphorylated when cultures of P. hollandica are adapted to high-light conditions. This phosphoprotein was iden...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.105.2.629

    authors: Warner KM,Bullerjahn GS

    更新日期:1994-06-01 00:00:00

  • Sequence and comparative analysis of the maize NB mitochondrial genome.

    abstract::The NB mitochondrial genome found in most fertile varieties of commercial maize (Zea mays subsp. mays) was sequenced. The 569,630-bp genome maps as a circle containing 58 identified genes encoding 33 known proteins, 3 ribosomal RNAs, and 21 tRNAs that recognize 14 amino acids. Among the 22 group II introns identified,...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.104.044602

    authors: Clifton SW,Minx P,Fauron CM,Gibson M,Allen JO,Sun H,Thompson M,Barbazuk WB,Kanuganti S,Tayloe C,Meyer L,Wilson RK,Newton KJ

    更新日期:2004-11-01 00:00:00

  • Sorbitol metabolism and sink-source interconversions in developing apple leaves.

    abstract::In apple (Malus domestica Borkh.) sorbitol is the primary product of photosynthesis, the major translocated form of carbon, and a common fruit constituent and storage compound. Previous work on sorbitol metabolism has revealed a NADPH-dependent aldose 6-phosphate reductase (A6PR) in green tissues, and a NAD-dependent ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.70.2.335

    authors: Loescher WH,Marlow GC,Kennedy RA

    更新日期:1982-08-01 00:00:00

  • Cooperative function of PLDδ and PLDα1 in abscisic acid-induced stomatal closure in Arabidopsis.

    abstract::Phospholipase D (PLD) is involved in responses to abiotic stress and abscisic acid (ABA) signaling. To investigate the roles of two Arabidopsis (Arabidopsis thaliana) PLDs, PLDα1 and PLDδ, in ABA signaling in guard cells, we analyzed ABA responses in guard cells using Arabidopsis wild type, pldα1 and pldδ single mutan...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.112.195578

    authors: Uraji M,Katagiri T,Okuma E,Ye W,Hossain MA,Masuda C,Miura A,Nakamura Y,Mori IC,Shinozaki K,Murata Y

    更新日期:2012-05-01 00:00:00

  • Extinction coefficients of chlorophyll a and B in n,n-dimethylformamide and 80% acetone.

    abstract::We found inconsistencies in the commonly used data for chlorophyll analysis in 80% acetone. Recently developed extinction coefficients for chlorophyll b in N,N-dimethylformamide (DMF) based on values from 80% acetone are low as a result of these inconsistencies. We determined extinction coefficients of chlorophyll a (...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.77.2.483

    authors: Inskeep WP,Bloom PR

    更新日期:1985-02-01 00:00:00

  • Characterization of P69E and P69F, two differentially regulated genes encoding new members of the subtilisin-like proteinase family from tomato plants.

    abstract::Subtilisin-like proteins represent an ancient family of serine proteases that are extremely widespread in living organisms. We report here the structure and genomic organization of two new transcriptionally active genes encoding proteins that belong to the P69 family of subtilisin-like proteases from tomato (Lycopersi...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.122.1.67

    authors: Jordá L,Conejero V,Vera P

    更新日期:2000-01-01 00:00:00

  • Modification of Herbicide Binding to Photosystem II in Two Biotypes of Senecio vulgaris L.

    abstract::THE PRESENT STUDY COMPARES THE BINDING AND INHIBITORY ACTIVITY OF TWO PHOTOSYSTEM II INHIBITORS: 3-(3,4-dichlorophenyl)-1,1-dimethylurea (diuron [DCMU]) and 2-chloro-4-(ethylamine)-6-(isopropyl amine)-S-triazene (atrazine). Chloroplasts isolated from naturally occurring triazine-susceptible and triazine-resistant biot...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.64.6.995

    authors: Pfister K,Radosevich SR,Arntzen CJ

    更新日期:1979-12-01 00:00:00

  • Structural Analysis of Secreted Root Slime from Maize (Zea mays L.).

    abstract::Secreted slime isolated from the incubation medium of Zea mays roots maintained axenically contains fucose, arabinose, xylose, galactose, and glucose as the major monosaccharides. The slime preparation contains low levels (3% weight/weight [w/w]) of uronic acids. Methylation analysis reveals an extraordinarily diverse...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.80.3.771

    authors: Bacic A,Moody SF,Clarke AE

    更新日期:1986-03-01 00:00:00

  • Oxidation of reduced nicotinamide adenine dinucleotide phosphate by isolated corn mitochondria.

    abstract::Isolated corn (Zea mays L.) mitochondria were found to oxidize reduced nicotinamide adenine dinucleotide phosphate in a KCl reaction medium. This oxidation was dependent on the presence of calcium or phosphate or both. Strontium and manganese substituted for calcium, but magnesium or barium did not. The oxidation of N...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.49.3.353

    authors: Koeppe DE,Miller RJ

    更新日期:1972-03-01 00:00:00

  • The ARF7 and ARF19 Transcription Factors Positively Regulate PHOSPHATE STARVATION RESPONSE1 in Arabidopsis Roots.

    abstract::PHOSPHATE STARVATION RESPONSE1 (PHR1) is a key regulatory component of the response to phosphate (Pi) starvation. However, the regulation of PHR1 in this response remains poorly understood. Here, we report that PHR1 is a target of the transcription factors AUXIN RESPONSE FACTOR7 (ARF7) and ARF19 and is positively regu...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.17.01713

    authors: Huang KL,Ma GJ,Zhang ML,Xiong H,Wu H,Zhao CZ,Liu CS,Jia HX,Chen L,Kjorven JO,Li XB,Ren F

    更新日期:2018-09-01 00:00:00

  • Evidence for nuclear processing of plant micro RNA and short interfering RNA precursors.

    abstract::The Arabidopsis genome encodes four Dicer-like (DCL) proteins, two of which contain putative nuclear localization signals. This suggests one or more nuclear pathways for processing double-stranded (ds) RNA in plants. To study the subcellular location of processing of nuclear-encoded dsRNA involved in transcriptional s...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.103.021980

    authors: Papp I,Mette MF,Aufsatz W,Daxinger L,Schauer SE,Ray A,van der Winden J,Matzke M,Matzke AJ

    更新日期:2003-07-01 00:00:00

  • Phototropism and photoinhibition of basipolar transport of auxin in oat coleoptiles.

    abstract::We have proposed that the lateral inequality of auxin associated with the phototropic response is a consequence of a light-induced impairment of basipolar transport of the hormone. If this is so, the dose-response curve for photoinhibition of auxin transport should resemble that for phototropism. Further, the waveleng...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.44.4.491

    authors: Shen-Miller J,Cooper P,Gordon SA

    更新日期:1969-04-01 00:00:00

  • An imperfect heat shock element and different upstream sequences are required for the seed-specific expression of a small heat shock protein gene.

    abstract::Chimeric constructs containing the promoter and upstream sequences of Ha hsp17.6 G1, a small heat shock protein gene, reproduced in transgenic tobacco (Nicotiana tabacum) its unique seed-specific expression patterns previously reported in sunflower. These constructs did not respond to heat shock, but were expressed wi...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.121.3.723

    authors: Carranco R,Almoguera C,Jordano J

    更新日期:1999-11-01 00:00:00

  • Phytochrome Regulation of the Response to Exogenous Gibberellins by Epicotyls of Vigna sinensis.

    abstract::The elongation rate of cowpea epicotyls from whole cowpea (Vigna sinensis) seedlings and derooted and debladed plants (explants) increased after the main light period (8-hour duration) was extended with either continuous low intensity tungsten light or brief (5 minutes) far-red (FR) irradiation. This end-of-day FR eff...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.85.1.212

    authors: García-Martínez JL,Keith B,Bonner BA,Stafford AE,Rappaport L

    更新日期:1987-09-01 00:00:00

  • Isolation of a Putative Carboxysomal Carbonic Anhydrase Gene from the Cyanobacterium Synechococcus PCC7942.

    abstract::The Type II mutants of the cyanobacterium Synechococcus PCC7942 (G.D. Price, M.R. Badger [1989] Plant Physiol 91: 514-525) are able to accumulate a large pool of inorganic carbon inside the cell, but are unable to utilize it for CO(2) fixation, resulting in a high CO(2)-requiring phenotype. We have isolated a 3.5-kb B...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.100.2.794

    authors: Yu JW,Price GD,Song L,Badger MR

    更新日期:1992-10-01 00:00:00

  • Mode of action of gibberellic Acid and light on lettuce seed germination.

    abstract::The seeds of lettuce (Lactuca sativa L. cv. Grand Rapids) germinate in darkness at 25 C when treated by gibberellic acid (GA(3)) for 1 hour following 2 hours of imbibition. The time of GA(3) application influences the rate and the final percentage of seeds that germinate. In contrast, red light illumination given at d...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.60.4.575

    authors: Lewak S,Khan AA

    更新日期:1977-10-01 00:00:00

  • Architecture-based multiscale computational modeling of plant cell wall mechanics to examine the hydrogen-bonding hypothesis of the cell wall network structure model.

    abstract::A primary plant cell wall network was computationally modeled using the finite element approach to study the hypothesis of hemicellulose (HC) tethering with the cellulose microfibrils (CMFs) as one of the major load-bearing mechanisms of the growing cell wall. A computational primary cell wall network fragment (10 × 1...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.112.201228

    authors: Yi H,Puri VM

    更新日期:2012-11-01 00:00:00

  • Characterization of an endo-beta-1,4-glucanase gene induced by auxin in elongating pea epicotyls.

    abstract::A gene (EGL1) encoding an endo-beta-1,4-D-glucanase (EGase, EC 3.2.1.4) of pea (Pisum sativum) has been cloned and characterized. EGL1 encodes a 486-amino acid polypeptide, including a 24-mer putative signal peptide. The mature protein has a calculated molecular mass of 51.3 kD and an isoelectric point of 9.1. This pe...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.110.1.163

    authors: Wu SC,Blumer JM,Darvill AG,Albersheim P

    更新日期:1996-01-01 00:00:00

  • Roles of brassinosteroids and related mRNAs in pea seed growth and germination.

    abstract::The levels of endogenous brassinosteroids (BRs) and the expression of the biosynthesis/metabolism/perception genes involved have been investigated during the development and germination of pea (Pisum sativum) seeds. When seeds were rapidly growing, the level of biologically active BRs (brassinolide [BL] and castastero...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.106.093096

    authors: Nomura T,Ueno M,Yamada Y,Takatsuto S,Takeuchi Y,Yokota T

    更新日期:2007-04-01 00:00:00

  • Manipulation of in vivo sorbitol production alters boron uptake and transport in tobacco

    abstract::Recent evidence that some species can retranslocate boron as complexes with sugar alcohols in the phloem suggests a possible mechanism for enhancing boron efficiency. We investigated the relationship between sugar alcohol (sorbitol) content, boron uptake and distribution, and translocation of foliar-applied, isotopica...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.119.2.735

    authors: Bellaloui N,Brown PH,Dandekar AM

    更新日期:1999-02-01 00:00:00

  • Chloroplastic phosphoadenosine phosphosulfate metabolism regulates basal levels of the prohormone jasmonic acid in Arabidopsis leaves.

    abstract::Levels of the enzymes that produce wound response mediators have to be controlled tightly in unwounded tissues. The Arabidopsis (Arabidopsis thaliana) fatty acid oxygenation up-regulated8 (fou8) mutant catalyzes high rates of alpha -linolenic acid oxygenation and has higher than wild-type levels of the alpha -linoleni...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.109.150474

    authors: Rodríguez VM,Chételat A,Majcherczyk P,Farmer EE

    更新日期:2010-03-01 00:00:00

  • Oscillatory growth in lily pollen tubes does not require aerobic energy metabolism.

    abstract::Oscillatory tip growth in pollen tubes depends on prodigious amounts of energy. We have tested the hypothesis that oscillations in the electron transport chain lead to growth oscillations in lily (Lilium formosanum). Using three respiratory inhibitors, oligomycin, antimycin A, and cyanide, we find that pollen tube gro...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.109.150896

    authors: Rounds CM,Hepler PK,Fuller SJ,Winship LJ

    更新日期:2010-02-01 00:00:00

  • Germination Potential of Dormant and Nondormant Arabidopsis Seeds Is Driven by Distinct Recruitment of Messenger RNAs to Polysomes.

    abstract::Dormancy is a complex evolutionary trait that temporally prevents seed germination, thus allowing seedling growth at a favorable season. High-throughput analyses of transcriptomes have led to significant progress in understanding the molecular regulation of this process, but the role of posttranscriptional mechanisms ...

    journal_title:Plant physiology

    pub_type: 杂志文章

    doi:10.1104/pp.15.00510

    authors: Basbouss-Serhal I,Soubigou-Taconnat L,Bailly C,Leymarie J

    更新日期:2015-07-01 00:00:00