Gene expression effects of lithium and valproic acid in a serotonergic cell line.

Abstract:

:Valproic acid (VPA) and lithium are widely used in the treatment of bipolar disorder. However, the underlying mechanism of action of these drugs is not clearly understood. We used RNA-Seq analysis to examine the global profile of gene expression in a rat serotonergic cell line (RN46A) after exposure to these two mood stabilizer drugs. Numerous genes were differentially regulated in response to VPA (log2 fold change ≥ 1.0; i.e., odds ratio of ≥2, at false discovery rate <5%), but only two genes ( Dynlrb2 and Cdyl2) showed significant differential regulation after exposure of the cells to lithium, with the same analysis criteria. Both of these genes were also regulated by VPA. Many of the differentially expressed genes had functions of potential relevance to mood disorders or their treatment, such as several serpin family genes (including neuroserpin), Nts (neurotensin), Maob (monoamine oxidase B), and Ap2b1, which is important for synaptic vesicle function. Pathway analysis revealed significant enrichment of Gene Ontology terms such as extracellular matrix remodeling, cell adhesion, and chemotaxis. This study in a cell line derived from the raphe nucleus has identified a range of genes and pathways that provide novel insights into potential therapeutic actions of the commonly used mood stabilizer drugs.

journal_name

Physiol Genomics

journal_title

Physiological genomics

authors

Balasubramanian D,Pearson JF,Kennedy MA

doi

10.1152/physiolgenomics.00069.2018

subject

Has Abstract

pub_date

2019-02-01 00:00:00

pages

43-50

issue

2

eissn

1094-8341

issn

1531-2267

journal_volume

51

pub_type

杂志文章
  • Reciprocal backcross mice confirm major loci linked to hyperoxic acute lung injury survival time.

    abstract::Morbidity and mortality associated with acute lung injury (ALI) and acute respiratory distress syndrome remain substantial. Although many candidate genes have been tested, a clear understanding of the pathogenesis is lacking, as is our ability to predict individual outcome. Because ALI is a complex disease, single gen...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.90392.2008

    authors: Prows DR,Winterberg AV,Gibbons WJ Jr,Burzynski BB,Liu C,Nick TG

    更新日期:2009-07-09 00:00:00

  • Cell dormancy plasticity: quiescence deepens into senescence through a dimmer switch.

    abstract::Both being dormant cellular states, quiescence and senescence are traditionally considered distinct. Quiescence is reversible to proliferation upon growth signals, whereas senescence is irreversible in physiological conditions. Recent findings, however, suggest that quiescence deepening with a decreased proliferative ...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00068.2020

    authors: Fujimaki K,Yao G

    更新日期:2020-11-01 00:00:00

  • Identification of genes whose expression is altered by obesity throughout the arterial tree.

    abstract::We used next-generation RNA sequencing (RNA-Seq) technology on the whole transcriptome to identify genes whose expression is consistently affected by obesity across multiple arteries. Specifically, we examined transcriptional profiles of the iliac artery as well as the feed artery, first, second, and third branch orde...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00091.2014

    authors: Padilla J,Jenkins NT,Thorne PK,Martin JS,Rector RS,Davis JW,Laughlin MH

    更新日期:2014-11-15 00:00:00

  • Transcriptome profiling and network analysis of genetically hypertensive mice identifies potential pharmacological targets of hypertension.

    abstract::Hypertension is a condition with major cardiovascular and renal complications, affecting nearly a billion patients worldwide. Few validated gene targets are available for pharmacological intervention, so there is a need to identify new biological pathways regulating blood pressure and containing novel targets for trea...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00010.2010

    authors: Puig O,Wang IM,Cheng P,Zhou P,Roy S,Cully D,Peters M,Benita Y,Thompson J,Cai TQ

    更新日期:2010-09-01 00:00:00

  • Insulin secretion and signaling in response to dietary restriction and subsequent re-alimentation in cattle.

    abstract::The objectives of this study were to examine systemic insulin response to a glucose tolerance test (GTT) and transcript abundance of genes of the insulin signaling pathway in skeletal muscle, during both dietary restriction and re-alimentation-induced compensatory growth. Holstein Friesian bulls were blocked to one of...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00002.2015

    authors: Keogh K,Kenny DA,Kelly AK,Waters SM

    更新日期:2015-08-01 00:00:00

  • Comparative gene array analyses of severe elastic fiber defects in late embryonic and newborn mouse aorta.

    abstract::Elastic fibers provide reversible elasticity to the large arteries and are assembled during development when hemodynamic forces are increasing. Mutations in elastic fiber genes are associated with cardiovascular disease. Mice lacking expression of the elastic fiber genes elastin ( Eln-/-), fibulin-4 ( Efemp2-/-), or l...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00080.2018

    authors: Staiculescu MC,Cocciolone AJ,Procknow JD,Kim J,Wagenseil JE

    更新日期:2018-11-01 00:00:00

  • Localization of a blood pressure QTL on rat chromosome 1 using Dahl rat congenic strains.

    abstract::We previously reported that markers on rat chromosome 1 are genetically linked to blood pressure in an F(2) population derived from Dahl salt hypertension-sensitive (S) and Lewis (LEW) rats. Because there was evidence for more than one blood pressure quantitative trait locus (QTL) on chromosome 1, an initial congenic ...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.1999.1.3.119

    authors: Saad Y,Garrett MR,Lee SJ,Dene H,Rapp JP

    更新日期:1999-11-11 00:00:00

  • Biomarker discovery: proteome fractionation and separation in biological samples.

    abstract::Proteomics, analogous with genomics, is the analysis of the protein complement present in a cell, organ, or organism at any given time. While the genome provides information about the theoretical status of the cellular proteins, the proteome describes the actual content, which ultimately determines the phenotype. The ...

    journal_title:Physiological genomics

    pub_type: 杂志文章,评审

    doi:10.1152/physiolgenomics.00282.2007

    authors: Matt P,Fu Z,Fu Q,Van Eyk JE

    更新日期:2008-03-14 00:00:00

  • Genetic influence on exercise-induced changes in physical function among mobility-limited older adults.

    abstract::To date, physical exercise is the only intervention consistently demonstrated to attenuate age-related declines in physical function. However, variability exists in seniors' responsiveness to training. One potential source of variability is the insertion (I allele) or deletion (D allele) of a 287 bp fragment in intron...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00169.2013

    authors: Buford TW,Hsu FC,Brinkley TE,Carter CS,Church TS,Dodson JA,Goodpaster BH,McDermott MM,Nicklas BJ,Yank V,Johnson JA,Pahor M,LIFE Research Group.

    更新日期:2014-03-01 00:00:00

  • Identification of potential caloric restriction mimetics by microarray profiling.

    abstract::To facilitate the development of assays for the discovery of pharmaceuticals capable of mimicking the effects of caloric restriction (CR) on life- and healthspan (CR mimetics), we evaluated the effectiveness of glucoregulatory and putative cancer chemopreventatives in reproducing the hepatic gene expression profile pr...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00069.2005

    authors: Dhahbi JM,Mote PL,Fahy GM,Spindler SR

    更新日期:2005-11-17 00:00:00

  • Linkage of myostatin pathway genes with knee strength in humans.

    abstract::This study was the first to explore the potential role of the myostatin (GDF8) pathway in relation to muscle strength and estimated muscle cross-sectional area in humans using linkage analysis with a candidate gene approach. In young male sibs (n = 329) 11 polymorphic markers in or near 10 candidate genes from the myo...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00224.2003

    authors: Huygens W,Thomis MA,Peeters MW,Aerssens J,Janssen R,Vlietinck RF,Beunen G

    更新日期:2004-05-19 00:00:00

  • Age-related impairment of the transcriptional responses to oxidative stress in the mouse heart.

    abstract::To investigate the transcriptional response to oxidative stress in the heart and how it changes with age, we examined the cardiac gene expression profiles of young (5-mo-old), middle-aged (15-mo-old), and old (25-mo-old) C57BL/6 mice treated with a single intraperitoneal injection of paraquat (50 mg/kg). Mice were kil...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00172.2002

    authors: Edwards MG,Sarkar D,Klopp R,Morrow JD,Weindruch R,Prolla TA

    更新日期:2003-04-16 00:00:00

  • Transfer of the Rf-1 region from FHH onto the ACI background increases susceptibility to renal impairment.

    abstract::The genetically hypertensive fawn-hooded (FHH/Eur) rat is characterized by the early presence of systolic and glomerular hypertension, progressive proteinuria (UPV), and albuminuria (UAV), and focal glomerulosclerosis, resulting in premature death from renal failure. Previous studies showed that at least five genetic ...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00030.2000

    authors: Provoost AP,Shiozawa M,Van Dokkum RP,Jacob HJ

    更新日期:2002-02-28 00:00:00

  • Chicken genomics resource: sequencing and annotation of 35,407 ESTs from single and multiple tissue cDNA libraries and CAP3 assembly of a chicken gene index.

    abstract::Its accessibility, unique evolutionary position, and recently assembled genome sequence have advanced the chicken to the forefront of comparative genomics and developmental biology research as a model organism. Several chicken expressed sequence tag (EST) projects have placed the chicken in 10th place for accrued ESTs...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00207.2005

    authors: Carre W,Wang X,Porter TE,Nys Y,Tang J,Bernberg E,Morgan R,Burnside J,Aggrey SE,Simon J,Cogburn LA

    更新日期:2006-05-16 00:00:00

  • Exoelectrogenic capacity of host microbiota predicts lymphocyte recruitment to the gut.

    abstract::Electrotaxis, directional cell movement in response to an electric potential, has been demonstrated in a wide range of cell types including lymphocytes. Exoelectrogens, microorganisms capable of generating electrical currents, have been identified in microbial fuel cells. However, no studies have investigated exoelect...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00010.2015

    authors: Ericsson AC,Davis DJ,Franklin CL,Hagan CE

    更新日期:2015-07-01 00:00:00

  • Angiopoietin-1 and vascular endothelial growth factor induce expression of inflammatory cytokines before angiogenesis.

    abstract::The purpose of this study was to identify novel transcriptional events occurring in the aortic wall before angiogenesis. We used a defined tissue culture system that takes advantage of the capacity of rat aortic rings to generate neovessels ex vivo in response to angiogenic factor stimulation. Total RNA isolated from ...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00048.2006

    authors: Aplin AC,Gelati M,Fogel E,Carnevale E,Nicosia RF

    更新日期:2006-10-03 00:00:00

  • Changes in global gene expression in rat myometrium in transition from late pregnancy to parturition.

    abstract::The process of parturition involves the complex interplay of factors that change the excitability and contractile activity of the uterus. We have compared the relative gene expression profile of myometrium from rats before parturition (21 days pregnant) and during delivery, using high-density DNA microarray. Of 8,740 ...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00290.2007

    authors: Helguera G,Eghbali M,Sforza D,Minosyan TY,Toro L,Stefani E

    更新日期:2009-01-08 00:00:00

  • Gene selection heuristic algorithm for nutrigenomics studies.

    abstract::Large datasets from -omics studies need to be deeply investigated. The aim of this paper is to provide a new method (LEM method) for the search of transcriptome and metabolome connections. The heuristic algorithm here described extends the classical canonical correlation analysis (CCA) to a high number of variables (w...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00139.2012

    authors: Valour D,Hue I,Grimard B,Valour B

    更新日期:2013-07-15 00:00:00

  • Transcriptional reprogramming and ultrastructure during atrophy and recovery of mouse soleus muscle.

    abstract::This study investigated the use of the hindlimb suspension (HS) and reloading model of mice for the mapping of ultrastructural and gene expressional alterations underlying load-dependent muscular adaptations. Mice were hindlimb suspended for 7 days or kept as controls (n = 12). Soleus muscles were harvested after HS (...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00100.2004

    authors: Däpp C,Schmutz S,Hoppeler H,Flück M

    更新日期:2004-12-15 00:00:00

  • Rapid changes in gene expression direct rapid shifts in intestinal form and function in the Burmese python after feeding.

    abstract::Snakes provide a unique and valuable model system for studying the extremes of physiological remodeling because of the ability of some species to rapidly upregulate organ form and function upon feeding. The predominant model species used to study such extreme responses has been the Burmese python because of the extrem...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00131.2014

    authors: Andrew AL,Card DC,Ruggiero RP,Schield DR,Adams RH,Pollock DD,Secor SM,Castoe TA

    更新日期:2015-05-01 00:00:00

  • Functional and structural characterization of the zebrafish Na+-sulfate cotransporter 1 (NaS1) cDNA and gene (slc13a1).

    abstract::Sulfate plays an essential role during growth, development and cellular metabolism. In this study, we characterized the function and structure of the zebrafish (Danio rerio) Na+-sulfate cotransporter 1 (NaS1) cDNA and gene (slc13a1). Zebrafish NaS1 encodes a protein of 583 amino acids with 13 putative transmembrane do...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.90234.2008

    authors: Markovich D,Romano A,Storelli C,Verri T

    更新日期:2008-08-15 00:00:00

  • LncRNA IUR downregulates ZEB1 by upregulating miR-200 to inhibit prostate carcinoma.

    abstract::We in this study investigated the role of imatinib-upregulated lncRNA (IUR) in prostate carcinoma (PC). We observed that IUR was downregulated in PC, and its expression levels decreased with the increase of clinical stages. In PC tissues, microRNA (miR)-200 was positively, while ZEB1 was inversely correlated with IUR....

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00062.2019

    authors: Sun L,Chen T,Li T,Yu J

    更新日期:2019-11-01 00:00:00

  • Gene expression in ductus arteriosus and aorta: comparison of birth and oxygen effects.

    abstract::Ductus arteriosus (DA) closure is initiated by oxygen rise postnatally and progresses in two, functional-to-permanent, stages. Here, using GeneChip Arrays in rats (normoxic and hyperoxic fetus, normoxic newborn), we examined whether oxygen alone duplicates the birth process in affecting DA genes. In addition, by compa...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00231.2005

    authors: Costa M,Barogi S,Socci ND,Angeloni D,Maffei M,Baragatti B,Chiellini C,Grasso E,Coceani F

    更新日期:2006-04-13 00:00:00

  • Evolution of ventricular myocyte electrophysiology.

    abstract::The relative importance of regulatory versus structural evolution for the evolution of different biological systems is a subject of controversy. The primacy of regulatory evolution in the diversification of morphological traits has been promoted by many evolutionary developmental biologists. For physiological traits, ...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00159.2007

    authors: Rosati B,Dong M,Cheng L,Liou SR,Yan Q,Park JY,Shiang E,Sanguinetti M,Wang HS,McKinnon D

    更新日期:2008-11-12 00:00:00

  • Mapping blood pressure loci in (A/J x B6)F2 mice.

    abstract::Although the genetics of rare, monogenic, forms of human hypertension are fairly well defined, the genetics of the common polygenic form of human essential hypertension is only emerging. With the ability to control environmental variables, animal models have provided valuable tools with which to study blood pressure (...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00027.2003

    authors: Woo DD,Kurtz I

    更新日期:2003-11-11 00:00:00

  • Modulation of the allergic asthma transcriptome following resiquimod treatment.

    abstract::Resiquimod is a compound belonging to the imidazoquinoline family of compounds known to signal through Toll-like receptor 7. Resiquimod treatment has been demonstrated to inhibit the development of allergen induced asthma in experimental models. The aim of the present study was to elucidate the molecular processes tha...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00057.2009

    authors: Camateros P,Kanagaratham C,Henri J,Sladek R,Hudson TJ,Radzioch D

    更新日期:2009-08-07 00:00:00

  • Stress-induced gene expression profiling in the black tiger shrimp Penaeus monodon.

    abstract::Cultured shrimp are continuously exposed to variable environmental conditions that have been associated with stress and subsequent outbreaks of disease. To investigate the effect of environmental stress on Penaeus monodon gene expression, a 3,853 random cDNA microarray chip was generated with clones originating from s...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00068.2007

    authors: de la Vega E,Hall MR,Wilson KJ,Reverter A,Woods RG,Degnan BM

    更新日期:2007-09-19 00:00:00

  • MicroRNAs in normal and psoriatic skin.

    abstract::Psoriasis is a chronic and common human skin disorder currently with no cure. Psoriatic skin displays inflammatory, raised, and scaly lesions with widely aberrant gene expression. Recent studies have revealed critical roles that microRNAs play as a class of posttranscriptional gene regulator in skin development and sk...

    journal_title:Physiological genomics

    pub_type: 杂志文章,评审

    doi:10.1152/physiolgenomics.00157.2013

    authors: Xia J,Zhang W

    更新日期:2014-02-15 00:00:00

  • Oxygen-dependent expression of hypoxia-inducible factor-1alpha in renal medullary cells of rats.

    abstract::Hypoxia-inducible factor-1alpha (HIF-1alpha) is a transcription factor that regulates the oxygen-dependent expression of a number of genes. This transcription factor may contribute to the abundant expression of many genes in renal medullary cells that function normally under hypoxic conditions. The present study was d...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.2001.6.3.159

    authors: Zou AP,Yang ZZ,Li PL,Cowley AW JR

    更新日期:2001-08-28 00:00:00

  • Changes in behavior and gene expression induced by caloric restriction in C57BL/6 mice.

    abstract::Caloric restriction (CR) is an effective method for prevention of age-associated diseases as well as overweight and obesity; however, there is controversy regarding the effects of dieting regimens on behavior. In this study, we investigated two different dieting regimens: repeated fasting and refeeding (RFR) and daily...

    journal_title:Physiological genomics

    pub_type: 杂志文章

    doi:10.1152/physiolgenomics.00082.2009

    authors: Yamamoto Y,Tanahashi T,Kawai T,Chikahisa S,Katsuura S,Nishida K,Teshima-Kondo S,Sei H,Rokutan K

    更新日期:2009-11-06 00:00:00