Comparison of false-negative rates and limits of detection following macrofoam-swab sampling of Bacillus anthracis surrogates via Rapid Viability PCR and plate culture.

Abstract:

AIMS:We evaluated the effects of Bacillus anthracis surrogates, low surface concentrations, surface materials and assay methods on false-negative rate (FNR) and limit of detection (LOD95 ) for recovering Bacillus spores using a macrofoam-swab sampling procedure. METHODS AND RESULTS:Bacillus anthracis Sterne or Bacillus atrophaeus Nakamura spores were deposited over a range of low target concentrations (2-500 per coupon) onto glass, stainless steel, vinyl tile and plastic. Samples were assayed using a modified Rapid Viability-PCR (mRV-PCR) method and the traditional plate culture method to obtain FNR and LOD95 results. CONCLUSIONS:Mean FNRs tended to be lower for mRV-PCR compared to culturing, and increased as spore concentration decreased for all surface materials. Surface material, but not B. anthracis surrogate, influenced FNRs with the mRV-PCR method. The mRV-PCR LOD95 was lowest for glass and highest for vinyl tile. LOD95 values overall were lower for mRV-PCR than for the culture method. SIGNIFICANCE AND IMPACT OF STUDY:This study adds to the limited data on FNR and LOD95 for mRV-PCR and culturing methods with low concentrations of B. anthracis sampled from various surface materials by the CDC macrofoam-swab method. These are key inputs for planning characterization and clearance studies for low contamination levels of B. anthracis.

journal_name

J Appl Microbiol

authors

Hutchison JR,Piepel GF,Amidan BG,Hess BM,Sydor MA,Deatherage Kaiser BL

doi

10.1111/jam.13706

subject

Has Abstract

pub_date

2018-05-01 00:00:00

pages

1092-1106

issue

5

eissn

1364-5072

issn

1365-2672

journal_volume

124

pub_type

杂志文章
  • Transmission routes of Salmonella Typhimurium DT 104 between 14 cattle and pig herds in Denmark demonstrated by molecular fingerprinting.

    abstract:AIMS:Salmonella Typhimurium DT 104 is generally assumed to be spread by contact between live animals, e.g. by trading. The aim of the present study was to assess the importance of other routes of transmission in the dissemination of this bacterium. METHODS AND RESULTS:An outbreak among 14 cattle and pig herds located ...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2006.02992.x

    authors: Langvad B,Skov MN,Rattenborg E,Olsen JE,Baggesen DL

    更新日期:2006-10-01 00:00:00

  • Formate and ethanol are the major products of glycerol fermentation produced by a Klebsiella planticola strain isolated from red deer.

    abstract::The rumen contents of red deer (Cervus elaphus) were used to isolate bacterial capable of fermenting glycerol. The biochemistry, physiology, morphology and phylogeny of one isolate were studied in detail. The isolate (DR3) was tentatively identified as a strain of the species Klebsiella planticola as based on phenotyp...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2672.1997.00217.x

    authors: Jarvis GN,Moore ER,Thiele JH

    更新日期:1997-08-01 00:00:00

  • Lactoferrin-derived peptides and Lactoferricin chimera inhibit virulence factor production and biofilm formation in Pseudomonas aeruginosa.

    abstract:AIMS:To investigate the bactericidal activity of lactoferrin-derived peptides and a new LF-derived peptides chimera (LFchimera) against P. aeruginosa and the influence on virulence factors of P. aeruginosa. METHODS AND RESULTS:Lactoferricin (LFcin) and lactoferrampin (LFampin) are highly bioactive peptides isolated fr...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2010.04751.x

    authors: Xu G,Xiong W,Hu Q,Zuo P,Shao B,Lan F,Lu X,Xu Y,Xiong S

    更新日期:2010-10-01 00:00:00

  • Metabolic engineering for isoprenoid-based biofuel production.

    abstract::Sustainable economic and industrial growth is the need of the hour and it requires renewable energy resources having better performance and compatibility with existing fuel infrastructure from biological routes. Isoprenoids (C ≥ 5) can be a potential alternative due to their diverse nature and physiochemical propertie...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章,评审

    doi:10.1111/jam.12871

    authors: Gupta P,Phulara SC

    更新日期:2015-09-01 00:00:00

  • Involvement of a rhamnolipid-producing strain of Pseudomonas aeruginosa in the degradation of polycyclic aromatic hydrocarbons by a bacterial community.

    abstract::A rhamnolipid-producing strain of Pseudomonas aeruginosa GL1 was isolated from a bacterial community growing on a mixture of polycyclic aromatic hydrocarbons (PAH) as sole carbon source. Strain GL1 did not grow on PAH but grew on known degradation metabolites of phenanthrene (O-phthalic acid) and of naphthalene (salic...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2672.1998.00412.x

    authors: Arino S,Marchal R,Vandecasteele JP

    更新日期:1998-05-01 00:00:00

  • Degradation of euptox A by tannase-producing rumen bacteria from migratory goats.

    abstract:AIMS:The gut microbiota capable of degrading plant biomass and antinutritional phytometabolites are of immense importance. This study reports isolation and characterization of tannase-producing rumen bacteria that could also degrade euptox A (9-oxo-10,11-dehydroageraphorone) present in Eupatorium adenophorum (Spreng). ...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.13563

    authors: Sharma D,Mal G,Kannan A,Bhar R,Sharma R,Singh B

    更新日期:2017-11-01 00:00:00

  • Research of quality indices for cold-smoked salmon using a stepwise multiple regression of microbiological counts and physico-chemical parameters.

    abstract:AIMS:The aim of the study was to assess the relationships between the remaining shelf-life (RSL) of cold-smoked salmon and various microbiological and physico-chemical parameters, using a multivariate data analysis in the form of stepwise forward multiple regression. METHODS AND RESULTS:Thirteen batches of French cold...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2672.2001.01283.x

    authors: Leroi F,Joffraud JJ,Chevalier F,Cardinal M

    更新日期:2001-04-01 00:00:00

  • Gene organization of the ornithine decarboxylase-encoding region in Morganella morganii.

    abstract:AIMS:The production of putrescine is a relevant property related to food quality and safety. Morganella morganii is responsible for putrescine production in fresh fish decomposition. The aim of this study was to gain deeper insights into the genetic determinants for putrescine production in M. morganii. METHODS AND RE...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2006.03188.x

    authors: de las Rivas B,Marcobal A,Muñoz R

    更新日期:2007-06-01 00:00:00

  • Multiple competitive PCR-DGGE as a tool for quantifying and profiling defined mixed cultures of lactic acid bacteria during production of probiotics from complex polysaccharides.

    abstract:AIMS:To apply a denaturing gradient gel electrophoretic (DGGE) method to quantify and profile individual strains during a mixed culture fermentation. METHODS AND RESULTS:DNA was extracted during the culture of lactic acid bacteria (LAB) and amplified in a multiple competitive PCR (cPCR) using general primers targeting...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2672.2003.02058.x

    authors: Pintado J,Guyot JP,Ampe F

    更新日期:2003-01-01 00:00:00

  • Isolation and identification of Burkholderia pseudomallei from soil using selective culture techniques and the polymerase chain reaction.

    abstract::An environmental soil survey to detect Burkholderia pseudomallei was performed during the dry and wet seasons in Darwin, Northern Territory, Australia. Soil was sampled at regular intervals during a 15-month period at different depths from areas which were representative of the local, soil environment. Selective cultu...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:

    authors: Brook MD,Currie B,Desmarchelier PM

    更新日期:1997-05-01 00:00:00

  • Sensitive detection of Mycobacterium avium subsp. paratuberculosis in bovine semen by real-time PCR.

    abstract:AIMS:To develop a fast and sensitive protocol for detection of Mycobacterium avium subsp. paratuberculosis (MAP) in bovine semen and to make a critical evaluation of the analytical sensitivity. METHODS AND RESULTS:Processed semen was spiked with known amounts of MAP. Semen from different bulls as well as semen of diff...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2006.02924.x

    authors: Herthnek D,Englund S,Willemsen PT,Bölske G

    更新日期:2006-05-01 00:00:00

  • Production and characterization of a new bioemulsifier from Pseudomonas putida ML2.

    abstract:AIMS:To characterize the bioemulsifier produced by a nonfluorescent strain of Pseudomonas putida isolated from a polluted sediment and to determine the influence of pH, temperature, media composition, and carbon and nitrogen source on growth and emulsifying activity. METHODS AND RESULTS:Different indexes were employed...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2004.02480.x

    authors: Bonilla M,Olivaro C,Corona M,Vazquez A,Soubes M

    更新日期:2005-01-01 00:00:00

  • Possible mechanism of antifungal phenazine-1-carboxamide from Pseudomonas sp. against dimorphic fungi Benjaminiella poitrasii and human pathogen Candida albicans.

    abstract:AIM:Investigation of antifungal mechanism of phenazine 1-carboxamide (PC) produced by a Pseudomonas strain MCC2142. METHODS AND RESULTS:An antifungal metabolite produced by a Pseudomonas was purified and identified as PC. Human pathogenic fungi such as Candida albicans, Candida glabrata, Cryptococcus neoformans, Fusar...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.12675

    authors: Tupe SG,Kulkarni RR,Shirazi F,Sant DG,Joshi SP,Deshpande MV

    更新日期:2015-01-01 00:00:00

  • Biological responses of Bacillus stratosphericus to floating electrode-dielectric barrier discharge plasma treatment.

    abstract:AIMS:Dielectric barrier discharge (DBD) plasma is used for sterilization of contaminated inanimate surfaces but seldomly optimized and depends upon the type of organisms and the plasma treatment duration, (net energy deposited) this efficacy varies. The proposed study was designed to see biological responses of one of ...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2010.04834.x

    authors: Cooper M,Fridman G,Fridman A,Joshi SG

    更新日期:2010-12-01 00:00:00

  • DNA microarray to detect and identify trichothecene- and moniliformin-producing Fusarium species.

    abstract:AIMS:To develop a DNA microarray for easy and fast detection of trichothecene- and moniliformin-producing Fusarium species. METHOD AND RESULTS:A DNA microarray was developed for detection and identification of 14 trichothecene- and moniliformin-producing species of the fungal genus Fusarium. The array could also diffe...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2006.03165.x

    authors: Kristensen R,Gauthier G,Berdal KG,Hamels S,Remacle J,Holst-Jensen A

    更新日期:2007-04-01 00:00:00

  • Lactobacillus kunkeei sp. nov.: a spoilage organism associated with grape juice fermentations.

    abstract::A Gram-positive rod was isolated from a commercial grape wine undergoing a sluggish/stuck alcoholic fermentation. The organism produced L-lactic acid from glucose, possessed weak catalase activity, and fermented relatively few carbohydrates, i.e. glucose, fructose, sucrose, raffinose (weakly) and mannitol. The 16S rRN...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2672.1998.00399.x

    authors: Edwards CG,Haag KM,Collins MD,Hutson RA,Huang YC

    更新日期:1998-05-01 00:00:00

  • Phenotypic and genetic diversity of rice seed-associated bacteria and their role in pathogenicity and biological control.

    abstract:AIMS:To study the phenotypic and genetic diversity of culturable bacteria associated with rice seed and to asses the antagonistic and pathogenic potential of the isolated bacteria. METHODS AND RESULTS:Seed of rice cultivar PSBRc14 was collected from farmers' fields of irrigated lowland in southern Luzon, Philippines. ...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2009.04268.x

    authors: Cottyn B,Debode J,Regalado E,Mew TW,Swings J

    更新日期:2009-09-01 00:00:00

  • Photobacterium damselae subsp. piscicida responds to antimicrobial peptides through phage-shock-protein A (PspA)-related extracytoplasmic stress response system.

    abstract:AIMS:To investigate whether Photobacterium damselae subsp. piscicida (Phdp) can sense and directly respond to the presence of cationic antimicrobial peptides (AMPs). METHODS AND RESULTS:We performed proteomic methodologies to investigate the responsive proteins of Phdp on exposure to AMP Q6. Proteins significantly alt...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.12672

    authors: Tsai WC,Kuo TY,Lin CY,Lin JC,Chen WJ

    更新日期:2015-01-01 00:00:00

  • Phenotypic and genotypic diversity of yeasts isolated from water-buffalo Mozzarella cheese.

    abstract::Water-buffalo Mozzarella (WBM) cheese is one of the several 'pasta filata' or stretched curd cheeses that originated in southern Italy, traditionally manufactured from raw milk employing natural whey starter cultures. Lactose- and galactose-fermenting yeasts isolated from WBM were studied to evaluate their role in the...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2672.2000.00926.x

    authors: Suzzi G,Lombardi A,Lanorte MT,Caruso M,Andrighetto C,Gardini F

    更新日期:2000-01-01 00:00:00

  • Contamination of milk by enterococci and coliforms from bovine faeces.

    abstract:AIM:To determine the contribution of enterococci and coliforms from bovine faeces and teats to contamination of raw milk. METHODS:Putative enterococci (n = 301) and coliforms (n = 365) were isolated from bovine faeces (n = 20), cows' teats (n = 20), the raw milk (n = 1) and the milking environment (n = 4) on one farm....

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2007.03338.x

    authors: Kagkli DM,Vancanneyt M,Vandamme P,Hill C,Cogan TM

    更新日期:2007-11-01 00:00:00

  • Expression of three Trichoderma reesei cellulase genes in Saccharomyces pastorianus for the development of a two-step process of hydrolysis and fermentation of cellulose.

    abstract:AIMS:To compare the production of recombinant cellulase enzymes in two Saccharomyces species so as to ascertain the most suitable heterologous host for the degradation of cellulose-based biomass and its conversion into bioethanol. METHOD AND RESULTS:cDNA copies of genes representing the three major classes of cellulas...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.12494

    authors: Fitzpatrick J,Kricka W,James TC,Bond U

    更新日期:2014-07-01 00:00:00

  • Reduction of ferric iron by acidophilic heterotrophic bacteria: evidence for constitutive and inducible enzyme systems in Acidiphilium spp.

    abstract:AIMS:To compare the abilities of two obligately acidophilic heterotrophic bacteria, Acidiphilium acidophilum and Acidiphilium SJH, to reduce ferric iron to ferrous when grown under different culture conditions. METHODS AND RESULTS:Bacteria were grown in batch culture, under different aeration status, and in the presen...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2672.2002.01535.x

    authors: Johnson DB,Bridge TA

    更新日期:2002-01-01 00:00:00

  • Clonostachys rosea BAFC3874 as a Sclerotinia sclerotiorum antagonist: mechanisms involved and potential as a biocontrol agent.

    abstract:AIMS:To establish the modes of action of the antagonistic fungal strain Clonostachys rosea BAFC3874 isolated from suppressive soils against Sclerotinia sclerotiorum and to determine its potential as a biocontrol agent. METHODS AND RESULTS:The antagonistic activity of C. rosea BAFC3874 was determined in vitro by dual c...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2011.04970.x

    authors: Rodríguez MA,Cabrera G,Gozzo FC,Eberlin MN,Godeas A

    更新日期:2011-05-01 00:00:00

  • A modified indirect mathematical model for evaluation of ethanol production efficiency in industrial-scale continuous fermentation processes.

    abstract:AIMS:To calculate fermentation efficiency in a continuous ethanol production process, we aimed to develop a robust mathematical method based on the analysis of metabolic by-product formation. METHODS AND RESULTS:This method is in contrast to the traditional way of calculating ethanol fermentation efficiency, where the...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.13240

    authors: Canseco Grellet MA,Castagnaro A,Dantur KI,De Boeck G,Ahmed PM,Cárdenas GJ,Welin B,Ruiz RM

    更新日期:2016-10-01 00:00:00

  • Potential risk-factors affecting Salmonella sp. and Escherichia coli occurrence and distribution in Midwestern United States swine feed mills.

    abstract:AIM:This study aimed to evaluate the patterns and potential risk factors associated with the occurrence of Salmonella sp. and Escherichia coli in selected United States swine feed mills. METHODS AND RESULTS:A total of 405 samples were collected during fall 2018, spring and summer 2019 from selected sites including flo...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.14758

    authors: Magossi G,Lambertini E,Noll L,Bai J,Jones C,Nagaraja TG,Phebus R,Woodworth J,Trinetta V

    更新日期:2020-12-01 00:00:00

  • The effect of toluidine blue on the survival, dormancy and outer membrane porin proteins (OmpC and OmpF) of Salmonella typhimurium LT2 in seawater.

    abstract:AIMS:To study the relationship between changes in the composition of the outer membrane proteins and the survival of Salmonella typhimurium LT2 in filtered autoclaved seawater containing Toluidine Blue (TB) dye as a photosensitizer. METHODS AND RESULTS:In samples exposed to TB and excited by artificial visible light, ...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2672.2002.01642.x

    authors: Ozkanca R,Sahin N,Isik K,Kariptas E,Flint KP

    更新日期:2002-01-01 00:00:00

  • Selective inhibition of Erwinia amylovora by the herbicidally active germination-arrest factor (GAF) produced by Pseudomonas bacteria.

    abstract:AIMS: The germination-arrest factor (GAF) produced by Pseudomonas fluorescens WH6, and identified as 4-formylaminooxyvinylglycine, specifically inhibits the germination of a wide range of grassy weeds. This study was undertaken to determine whether GAF has antimicrobial activity in addition to its inhibitory effects on...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/j.1365-2672.2011.05098.x

    authors: Halgren A,Azevedo M,Mills D,Armstrong D,Thimmaiah M,McPhail K,Banowetz G

    更新日期:2011-10-01 00:00:00

  • Novel targets for the future development of antibacterial agents.

    abstract::Recent advances in DNA sequencing technology have made it possible to elucidate the entire genomes of pathogenic bacteria, and advancements in bioinformatic tools have driven comparative studies of these genome sequences. These evaluations are dramatically increasing our ability to make valid considerations of the lim...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章,评审

    doi:

    authors: McDevitt D,Payne DJ,Holmes DJ,Rosenberg M

    更新日期:2002-01-01 00:00:00

  • Filter-based PNA in situ hybridization for rapid detection, identification and enumeration of specific micro-organisms.

    abstract:AIMS:A method for rapid and simultaneous detection, identification and enumeration of specific micro-organisms using Peptide Nucleic Acid (PNA) probes is presented. METHODS AND RESULTS:The method is based on a membrane filtration technique. The membrane filter was incubated for a short period of time. The microcolonie...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1046/j.1365-2672.2001.01230.x

    authors: Perry-O'Keefe H,Stender H,Broomer A,Oliveira K,Coull J,Hyldig-Nielsen JJ

    更新日期:2001-02-01 00:00:00

  • Protective effect of mannan oligosaccharides against early colonization by Salmonella Enteritidis in chicks is improved by higher dietary threonine levels.

    abstract:AIMS:To evaluate mannan oligosaccharide (MOS) and threonine effects on performance, small intestine morphology and Salmonella spp. counts in Salmonella Enteritidis-challenged birds. METHODS AND RESULTS:One-day-old chicks (1d) were distributed into five treatments: nonchallenged animals fed basal diet (RB-0), animals f...

    journal_title:Journal of applied microbiology

    pub_type: 杂志文章

    doi:10.1111/jam.12108

    authors: Santos EG,Costa FG,Silva JH,Martins TD,Figueiredo-Lima DF,Macari M,Oliveira CJ,Givisiez PE

    更新日期:2013-04-01 00:00:00