Unique XCI evolution in Tokudaia: initial XCI of the neo-X chromosome in Tokudaia muenninki and function loss of XIST in Tokudaia osimensis.

Abstract:

:X chromosome inactivation (XCI) is an essential mechanism to compensate gene dosage in mammals. Here, we show that XCI has evolved differently in two species of the genus Tokudaia. The Amami spiny rat, Tokudaia osimensis, has a single X chromosome in males and females (XO/XO). By contrast, the Okinawa spiny rat, Tokudaia muenninki, has XX/XY sex chromosomes like most mammals, although the X chromosome has acquired a neo-X region by fusion with an autosome. BAC clones containing the XIST gene, which produces the long non-coding RNA XIST required for XCI, were obtained by screening of T. osimensis and T. muenninki BAC libraries. Each clone was mapped to the homologous region of the X inactivation center in the X chromosome of the two species by BAC-FISH. XIST RNAs were expressed in T. muenninki females, whereas no expression was observed in T. osimensis. The sequence of the XIST RNA was compared with that of mouse, showing that the XIST gene is highly conserved in T. muenninki. XIST RNAs were localized to the ancestral X region (Xq), to the heterochromatic region (pericentromeric region), and partially to the neo-X region (Xp). The hybridization pattern correlated with LINE-1 accumulation in Xq but not in Xp. Dosage of genes located on the neo-X chromosome was not compensated, suggesting that the neo-X region is in an early state of XCI. By contrast, many mutations were observed in the XIST gene of T. osimensis, indicating its loss of function in the XO/XO species.

journal_name

Chromosoma

journal_title

Chromosoma

authors

Zushi H,Murata C,Mizushima S,Nishida C,Kuroiwa A

doi

10.1007/s00412-017-0639-4

subject

Has Abstract

pub_date

2017-12-01 00:00:00

pages

741-751

issue

6

eissn

0009-5915

issn

1432-0886

pii

10.1007/s00412-017-0639-4

journal_volume

126

pub_type

杂志文章
  • A high resolution study of the DNA replication patterns of chinese hamster chromosomes using sister chromatid differential staining technique.

    abstract::Chinese hamster cells were grown for 1+ and 2+ cell cycles in the presence of BrdU and then treated by the sister chromatid differential staining technique (SCD). Those regions of a chromosome which had replicated twice in the presence of BrdU were pale staining and by selecting appropriate metaphase cells an accurate...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF00364018

    authors: Crossen PE,Pathak S,Arrighi FE

    更新日期:1975-11-11 00:00:00

  • Leagues of their own: sexually dimorphic features of meiotic prophase I.

    abstract::Meiosis is a conserved cell division process that is used by sexually reproducing organisms to generate haploid gametes. Males and females produce different end products of meiosis: eggs (females) and sperm (males). In addition, these unique end products demonstrate sex-specific differences that occur throughout meios...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/s00412-019-00692-x

    authors: Cahoon CK,Libuda DE

    更新日期:2019-09-01 00:00:00

  • Mechanisms of chromosome banding. VIII. Hoechst 33258-DNA interaction.

    abstract::The interaction of Hoechst 33258 with DNA has been examined to help clarify the mechanisms of banding. 1. In agreement with previous studies Hoechst fluorescence is enhanced to a greater degree in AT-rich compared to GC-rich DNA. 2. Hoechst causes an increase in the DNA Tm which is greater at the higher AT content of ...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF00332113

    authors: Comings DE

    更新日期:1975-10-14 00:00:00

  • Interphase chromosomal abnormalities and mitotic missegregation of hypomethylated sequences in ICF syndrome cells.

    abstract::The immunodeficiency, centromeric region instability, facial anomalies (ICF) syndrome is a rare autosomal recessive disease. Usually, it is caused by mutations in the DNA methyltransferase 3B gene, which result in decreased methylation of satellite DNA in the juxtacentromeric heterochromatin at 1qh, 16qh, and 9qh. Sat...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/s00412-005-0343-7

    authors: Gisselsson D,Shao C,Tuck-Muller CM,Sogorovic S,Pålsson E,Smeets D,Ehrlich M

    更新日期:2005-07-01 00:00:00

  • Oocyte heterogeneity with respect to the meiotic silencing of unsynapsed X chromosomes in the XY female mouse.

    abstract::In the XY pachytene spermatocyte, the sex chromosomes do not synapse except for the pseudoautosomal region and become transcriptionally silenced. It has been suggested that the meiotic silencing of unsynapsed chromatin (MSUC) also occurs in oocytes. In the XY sex-reversed female mouse, the sex chromosomes fail to pair...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/s00412-013-0415-z

    authors: Taketo T,Naumova AK

    更新日期:2013-10-01 00:00:00

  • Proportional polyploidization of 5S RNA genes in the ovary of Drosophila melanogaster mutants containing three 5S RNA gene loci.

    abstract::The 5S RNA gene content of polyploid cells of the ovary of Drosophila melanogaster has been compared in animals with two or three gene clusters. The amount of 5S RNA genes is exactly proportional to the number of gene clusters as determined by DNA-RNA filter hybridization. In contrast, the number of rDNA genes in endo...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF00328768

    authors: Renkawitz-Pohl R

    更新日期:1979-01-31 00:00:00

  • Isolation of DNA from single microsurgically excised bands of polytene chromosomes of Chironomus.

    abstract::A method is described for excising by a glass knife single bands of isolated polytene chromosomes of the salivary glands of Chironomus tentans larvae. DNA strands were isolated from cut-out bands and their contour lengths were determined on electron micrographs. The mean contour length of DNA strands isolated from the...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF00292850

    authors: Frey M,Koller T,Lezzi M

    更新日期:1982-01-01 00:00:00

  • Structure of kinetochore fibers: microtubule continuity and inter-microtubule bridges.

    abstract::To understand how microtubules interact in forming the mitotic apparatus and orienting and moving chromosomes, the precise arrangement of microtubules in kinetochore fibers in Chinese hamster ovary cells was examined. Individual microtubules were traced, using high voltage electron microscopy of serial 0.25 micron sec...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF00328277

    authors: Witt PL,Ris H,Borisy GG

    更新日期:1981-01-01 00:00:00

  • New 18S.26S ribosomal RNA gene loci: chromosomal landmarks for the evolution of polyploid wheats.

    abstract::Three new 18S.26S rRNA gene loci were identified in common wheat by sequential N-banding and in situ hybridization (ISH) analysis. Locus Nor-A7 is located at the terminal area of the long arm of 5A in both diploid and polyploid wheats. Locus Nor-B6 is located in N-band 1BL2.5 of the long arm of chromosome 1B in Tritic...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF00368010

    authors: Jiang J,Gill BS

    更新日期:1994-06-01 00:00:00

  • The centromere composition of multiple repetitive sequences on rice chromosome 5.

    abstract::The large-scale primary structure of the centromeric region of rice chromosome 5 was analyzed, the first example in a cereal species. The yeast artificial chromosome (YAC) and bacterial artificial chromosome (BAC) contigs aligned on the centromere of rice chromosome 5 (CEN5) covered a distance of more than 670 kb. Str...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/s004120100148

    authors: Nonomura K,Kurata N

    更新日期:2001-08-01 00:00:00

  • Meiotic chromosome behaviour reflects levels of sequence divergence in Sus scrofa domestica satellite DNA.

    abstract::We present a general model for the evolution of chromosome-specific satellite DNA subfamilies. Sus scrofa domestica has a bimodal karyotype with two autosomal subsets of 12 meta-/submetacentric (Mc) and 6 acrocentric (Ac) chromosome types (Mc and Ac "subgenomes"). We show that the centromeric heterochromatin is charac...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF01731720

    authors: Jantsch M,Hamilton B,Mayr B,Schweizer D

    更新日期:1990-09-01 00:00:00

  • Chromosome structure deficiencies in MCPH1 syndrome.

    abstract::Mutations in the MCPH1 gene result in primary microcephaly in combination with a unique cellular phenotype of defective chromosome condensation. MCPH1 patient cells display premature chromosome condensation in G2 phase of the cell cycle and delayed decondensation in early G1 phase, observable as an increased proportio...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/s00412-015-0512-2

    authors: Arroyo M,Trimborn M,Sánchez A,Hirano T,Neitzel H,Marchal JA

    更新日期:2015-12-01 00:00:00

  • Cyclin B3 is dispensable for mouse spermatogenesis.

    abstract::Cyclins, as regulatory partners of cyclin-dependent kinases (CDKs), control the switch-like cell cycle transitions that orchestrate orderly duplication and segregation of genomes. Compared to mitosis, relatively little is known about how cyclin-CDK complexes control meiosis, the specialized cell division that generate...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/s00412-019-00725-5

    authors: Karasu ME,Keeney S

    更新日期:2019-09-01 00:00:00

  • Ultrastructure of regions containing homologous loci in polytene chromosomes of Drosophila melanogaster and Drosophila subobscura.

    abstract::We have used a new approach involving in situ hybridisation and electron microscopy to establish ultrastructural homologies between polytene chromosome regions of Drosophila melanogaster and Drosophila subobscura. Twelve probes were chosen to cover all the chromosomal elements: the myospheroid gene, the collagen type ...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/s004120050287

    authors: Cuenca JB,Galindo MI,Saura AO,Sorsa V,de Frutos R

    更新日期:1998-05-01 00:00:00

  • Partitioning the C. elegans genome by nucleosome modification, occupancy, and positioning.

    abstract::We have characterized two post-translational histone modifications in Caenorhabditis elegans on a genomic scale. Micrococcal nuclease digestion and immunoprecipitation were used to obtain distinct populations of single nucleosome cores, which were analyzed using massively parallel DNA sequencing to obtain positional a...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/s00412-009-0235-3

    authors: Gu SG,Fire A

    更新日期:2010-02-01 00:00:00

  • Molecular structure of the rDNA intergenic spacer (IGS) in Triturus: implications for the hypervariability of rDNA loci.

    abstract::Ribosomal DNA (rDNA) variation in the species Triturus vulgaris meridionalis (Amphibia, Urodela) is remarkable because of unusually high intraspecific variability in the number and distribution of ribosomal loci in the karyotype; in addition, portions of the intergenic spacer (IGS) are clustered at chromosomal loci wh...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/s004120050253

    authors: De Lucchini S,Andronico F,Nardi I

    更新日期:1997-10-01 00:00:00

  • Large scale isolation of nuclei and nucleoli from vitellogenic oocytes of Xenopus laevis.

    abstract::A new method is described which allows the purification of large quantities of nuclei (germinal vesicles) from Xenopus laevis vitellogenic oocytes of different developmental stages. From the isolated nuclei, purified nucleoli were obtained. The isolated germinal vesicles are transcriptionally active showing endogenous...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF00328531

    authors: Scalenghe F,Buscaglia M,Steinheil C,Crippa M

    更新日期:1978-05-16 00:00:00

  • Heterochromatin markers: a search for heterochromatin specific middle repetitive sequences in Drosophila.

    abstract::We sought for cloned sequences of middle repetitive (MR) complexity that mark obligatory heterochromatic regions. Total genome probes were employed in a differential screening procedure to recover X-specific, Y-specific and autosomal specific heterochromatic sequences. X-and Y-linked sequences were recovered in the sa...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF00330119

    authors: Lifschytz E,Hareven D

    更新日期:1982-01-01 00:00:00

  • Re-evaluating the role of Tao1 in the spindle checkpoint.

    abstract::The spindle checkpoint restrains anaphase onset and mitotic exit until all chromosomes are stably attached to the mitotic spindle via their kinetochores. The Tao1 protein kinase was recently reported as a novel spindle checkpoint component. When an siRNA was used to repress Tao1, the essential spindle checkpoint compo...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/s00412-010-0261-1

    authors: Westhorpe FG,Diez MA,Gurden MD,Tighe A,Taylor SS

    更新日期:2010-08-01 00:00:00

  • Chromosome segregation and spindle structure in crane fly spermatocytes following Colcemid treatment.

    abstract::Chromosome segregation in primary spermatocytes of the crane fly Nephrotoma suturalis was studied after exposure to Colcemid at doses that did not completely inhibit spindle formation. Colcemid was added either to the medium in which larvae were cultured or to Tricine buffer in which isolated testes were incubated. Pa...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF00291004

    authors: LaFountain JR Jr

    更新日期:1985-01-01 00:00:00

  • Dynamic gene order on the Silene latifolia Y chromosome.

    abstract::Dioecious Silene latifolia evolved heteromorphic sex chromosomes within the last ten million years, making it a species of choice for studies of the early stages of sex chromosome evolution in plants. About a dozen genes have been isolated from its sex chromosomes and basic genetic and deletion maps exist for the X an...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/s00412-011-0311-3

    authors: Howell EC,Armstrong SJ,Filatov DA

    更新日期:2011-06-01 00:00:00

  • Replication analysis of plasmid DNAs injected into Drosophila embryos.

    abstract::From a "shotgun" collection of DNA fragments, isolated from Drosophila melanogaster, we selected sequences that function as autonomously replicating sequences (ARS) in the yeast Saccharomyces cerevisiae. To investigate the replicative potential of such sequences in Drosophila, five of these ARS elements and also the A...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF00344161

    authors: Roth GE

    更新日期:1991-05-01 00:00:00

  • Isolation and molecular analysis of inv dup(15) and construction of a physical map of a common breakpoint in order to elucidate their mechanism of formation.

    abstract::An inverted duplication of chromosome 15 [inv dup(15)] is the most common supernumerary marker chromosome, comprising approximately 50% of all chromosomes in this class. Structurally, the inv dup(15) is a mirror image with the central axis defining a distal break within either the heterochromatic alpha-satellite array...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/s004120000103

    authors: Wandstrat AE,Schwartz S

    更新日期:2000-11-01 00:00:00

  • Lateral asymmetry in human constitutive heterochromatin.

    abstract::Human lymphocytes were grown for one replication cycle in BrdU, stained with 33258 Hoechst, exposed to UV light and subsequently treated with 2 x SSC and stained with Giemsa. This technique differentially stains the constitutive heterochromatin of chromosomes 1, 9, 15, 16, and the Y. In the heterochromatin of chromoso...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF00326317

    authors: Angell RR,Jacobs PA

    更新日期:1975-08-11 00:00:00

  • Conversion of post-elongation stage DNA to mature DNA occurs even if movement of the replication fork has stopped.

    abstract::During DNA synthesis there is a distinct stage immediately after the joining of large DNA replication intermediates (post-elongation stage). The conversion of this DNA to mature DNA was analysed in cells treated with aphidicolin to stop the movement of the replication fork. In such cells mature DNA is formed. In contr...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF00330347

    authors: Lönn U,Lönn S

    更新日期:1987-01-01 00:00:00

  • Classification of Y chromosome polymorphisms by DNA content and C-banding.

    abstract::A system has been developed using a microscope photometer to measure the DNA content of individual chromosomes. After correcting for the systematic and statistical errors the measured values are highly reproducible. Data are presented of measurements of human Y chromosomes from a cytogenetically normal population. Whe...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF00371969

    authors: Wall WJ,Butler LJ

    更新日期:1989-01-01 00:00:00

  • Population cytogenetics of the genus Caledia (Orthoptera: Acridinae). I. Inter- and intraspecific karyotype diversity.

    abstract::The genus Caledia acontains two species. C. species nova 1 is restricted to the Oriomo Plateau of S. W. Papua and has a complement of twelve telocentric chromosomes. The second species C. captiva has a much wider distribution pattern--from S.W. Papua in the North, down the entire Eastern seaboard of Australia to South...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF00293452

    authors: Shaw DD

    更新日期:1976-02-23 00:00:00

  • Identification of Porto-1, a new repeated sequence that localises close to the centromere of chromosome 2 of Drosophila melanogaster.

    abstract::We have used the polymerase chain reaction (PCR) technique to search the Drosophila melanogaster genome for the presence of sequences with homology to mammalian and yeast centromeric DNA. Using primers based on the human CENP-B box present in alpha-satellite DNA and part of the Saccharomyces cerevisiae CDEIII centrome...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:

    authors: Coelho PA,Nurminsky D,Hartl D,Sunkel CE

    更新日期:1996-10-01 00:00:00

  • Frequency and distribution of chiasmata in Syrian hamster spermatocytes studied by the BrdU antibody technique.

    abstract::The frequency and distribution of chiasmata and the nature of terminal "associations" was re-examined in Syrian hamster spermatocytes using the 5-bromo-2'-deoxyuridine (BrdU) antibody technique (BAT) for differential chromatid labelling. Differential chromatid substitution was achieved by BrdU incorporation at the pen...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/BF01731702

    authors: Latos-Bielenska A,Vogel W

    更新日期:1990-08-01 00:00:00

  • Structural differences in centromeric heterochromatin are spatially reconciled on fertilisation in the mouse zygote.

    abstract::In mammals, paternal and maternal pronuclei undergo profound chromatin reorganisation upon fertilisation. How these events are orchestrated within centromeric regions to ensure proper chromosome segregation in the following cellular divisions is unknown. In this study, we followed the dynamic unfolding of the centrome...

    journal_title:Chromosoma

    pub_type: 杂志文章

    doi:10.1007/s00412-007-0106-8

    authors: Probst AV,Santos F,Reik W,Almouzni G,Dean W

    更新日期:2007-08-01 00:00:00