Towards understanding transcriptional networks in cellular reprogramming.

Abstract:

:Most of the knowledge we have on the molecular mechanisms of transcription factor mediated reprogramming comes from studies conducted in induced pluripotency. Recently however, a few studies investigated the mechanisms of cellular reprogramming in direct and indirect transdifferentiation, which allows us to explore whether shared parallel mechanisms can be drawn. Moreover, there are currently several computational tools that have been developed to predict and enhance the reprogramming process by reconstructing the transcriptional networks of reprogramming cells. These new tools have the potential to greatly benefit the field of reprogramming, providing us with new approaches that can transform our understanding of the initiation, progression and successful completion of cellular fate transition.

journal_name

Curr Opin Genet Dev

authors

Firas J,Polo JM

doi

10.1016/j.gde.2017.06.001

subject

Has Abstract

pub_date

2017-10-01 00:00:00

pages

1-8

eissn

0959-437X

issn

1879-0380

pii

S0959-437X(17)30010-2

journal_volume

46

pub_type

杂志文章,评审
  • Genetic screens in mice for genome integrity maintenance and cancer predisposition.

    abstract::Genome instability is a feature of nearly all cancers and can be exploited for therapy. In addition, a growing number of genome maintenance genes have been associated with developmental disorders. Efforts to understand the role of genome instability in these processes will be greatly facilitated by a more comprehensiv...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2013.10.010

    authors: Balmus G,McIntyre RE

    更新日期:2014-02-01 00:00:00

  • Translational regulation in growth cones.

    abstract::Axonal growth cones (GCs) steer in response to extrinsic cues using mechanisms that include local protein synthesis. This adaptive form of gene regulation occurs with spatial precision and depends on subcellular mRNA localisation. Recent genome-wide studies have shown unexpectedly complex and dynamically changing mRNA...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2011.04.004

    authors: Jung H,O'Hare CM,Holt CE

    更新日期:2011-08-01 00:00:00

  • Cancer-associated fibroblasts and tumor growth--bystanders turning into key players.

    abstract::Novel mechanisms, and molecular mediators, of the pro-tumorigenic effects of cancer-associated fibroblasts (CAFs) have been identified. These include CXCL12/SDF-1-mediated recruitment of bone marrow-derived endothelial precursor cell and pro-metastatic effects of CCL5. Co-culture experiments also suggest that CAFs can...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2009.01.003

    authors: Ostman A,Augsten M

    更新日期:2009-02-01 00:00:00

  • Novel gene families involved in neural pathfinding.

    abstract::Recent studies have uncovered a bifunctional role of the diffusible axon guidance molecules netrin-1 and UNC-6 in that they attract some axons and steer others away simultaneously. Homology screens have extended the semaphorin and collapsin family to include at least 20 members, in both secreted and membrane-bound for...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(96)80069-4

    authors: Müller BK,Bonhoeffer F,Drescher U

    更新日期:1996-08-01 00:00:00

  • Temporal dynamics, spatial range, and transcriptional interpretation of the Dorsal morphogen gradient.

    abstract::Dorsoventral pattern of Drosophila embryo is specified by the nuclear localization gradient of the transcription factor Dorsal. Genetic and genomic studies of this morphogen gradient provided important insights into spatial control of gene expression in development. Recent live imaging experiments revealed hitherto un...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2012.08.005

    authors: Rushlow CA,Shvartsman SY

    更新日期:2012-12-01 00:00:00

  • Facts about FACT and transcript elongation through chromatin.

    abstract::The regulation of transcription elongation within the context of chromatin is a topic of great interest. Even though chromatin presents a barrier to transcription by the PolII machinery in vitro, this process is rather efficient in vivo. Importantly, the chromatin structure of the actively transcribed genes is altered...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2004.02.004

    authors: Belotserkovskaya R,Reinberg D

    更新日期:2004-04-01 00:00:00

  • Nuclear neighborhoods and gene expression.

    abstract::The eukaryotic nucleus is a highly compartmentalized and dynamic environment. Chromosome territories are arranged nonrandomly within the nucleus and numerous studies have indicated that a gene's position in the nucleus can impact its transcriptional activity. Here, we focus on recent advances in our understanding of t...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2009.02.007

    authors: Zhao R,Bodnar MS,Spector DL

    更新日期:2009-04-01 00:00:00

  • Point mutations as a source of de novo genetic disease.

    abstract::Family-based next generation sequencing (NGS) has recently pointed to an important role for de novo germline point mutations in both rare and common genetic disorders associated with reduced fitness. In this review we highlight the impact of the mutational target size on the frequency of diseases caused by these de no...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2013.01.007

    authors: de Ligt J,Veltman JA,Vissers LE

    更新日期:2013-06-01 00:00:00

  • Papillomaviruses and human oncogenesis.

    abstract::During the past year, significant advances have been made in understanding the functions of the oncoproteins, E6 and E7, of human papillomaviruses that are associated with malignant genital tumors. In addition, important new information is now available on the responses of both the keratinocyte and of the individual f...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(05)80329-6

    authors: Gissmann L

    更新日期:1992-02-01 00:00:00

  • Fibrillln mutations in Marfan syndrome and related phenotypes.

    abstract::A casual association has been established between mutations in the fibrillin 1 gene and Marfan syndrome and related phenotypes. Analysis of mutations in these disease types has provided new insights into microfibril assembly and function. These include evidence for a mutation in a fibrillin 1 domain associated with se...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(96)80007-4

    authors: Ramirez F

    更新日期:1996-06-01 00:00:00

  • The evolution of animal microRNA function.

    abstract::MicroRNAs (miRNAs) are a large class of small RNAs that function as negative gene regulators in eukaryotes. They regulate diverse biological processes, and bioinformatics data indicate that each miRNA can control hundreds of gene targets, underscoring the potential influence of miRNAs on almost every genetic pathway. ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2007.02.004

    authors: Niwa R,Slack FJ

    更新日期:2007-04-01 00:00:00

  • Message in a nucleus: signaling to the transcriptional machinery.

    abstract::Tissue differentiation and signal transduction involve dramatic changes in gene expression. These changes can be brought about by the expression or activation of sequence-specific transcription factors. In order to regulate their target genes, such factors must navigate the intricate chromatin environment and engage t...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2008.07.007

    authors: Carrera I,Treisman JE

    更新日期:2008-10-01 00:00:00

  • The PML nuclear bodies: actors or extras?

    abstract::The PML and SP100-containing nuclear bodies (NBs) represent the best-studied example of a defined nuclear substructure the integrity of which is compromised in certain human diseases, including leukemia, neurodegenerative disorders and viral infection. Although recent progress has underscored the unexpectedly broad in...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(99)80054-9

    authors: Seeler JS,Dejean A

    更新日期:1999-06-01 00:00:00

  • Viral-encoded cyclins.

    abstract::D-type cyclin homologs have been found in the genomes of herpesviruses associated with neoplasias. They appear to exploit features of G(1) cyclins but extend their properties to allow for deregulation of the cell cycle. Advances in the study of the molecular basis for these novel features as well as the potential role...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(99)00045-3

    authors: Laman H,Mann DJ,Jones NC

    更新日期:2000-02-01 00:00:00

  • The evolutionary history of Southern Africa.

    abstract::The genomic variability of Southern African groups is characterized by an exceptional degree of diversity, which is the result of long-term local evolutionary history, migrations and gene-flow. Over the last few years several investigations have identified and described signatures related to these processes, revealing...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2018.11.003

    authors: Montinaro F,Capelli C

    更新日期:2018-12-01 00:00:00

  • Homeobox genes in vertebrate gastrulation.

    abstract::The formation and anteroposterior patterning of the three definitive germ layers, ectoderm, or epiblast, is the common theme of vertebrate gastrulation. What changes from system to system is the geometry of these events and the nature of the non-epiblast transient structures implicated. A number of molecular markers, ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/0959-437x(95)80031-x

    authors: Boncinelli E,Mallamaci A

    更新日期:1995-10-01 00:00:00

  • The mechanisms shaping the single-cell transcriptional landscape.

    abstract::Recent technological and computational advances in understanding the transcriptional and chromatin features of single cells have begun answering longstanding questions in the extent and impact of biological heterogeneity. Here, we outline the intrinsic and extrinsic mechanisms that underlie the transcriptional and fun...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2015.11.004

    authors: Martinez-Jimenez CP,Odom DT

    更新日期:2016-04-01 00:00:00

  • Signal transduction during C. elegans vulval development: a NeverEnding story.

    abstract::The Caenorhabditis elegans hermaphrodite vulva is one of the best studied models for signal transduction and cell fate determination during organogenesis. Systematic forward genetic screens have identified a complex and highly interconnected signaling network formed by the conserved EGFR, NOTCH, and WNT signaling path...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2015.01.006

    authors: Schmid T,Hajnal A

    更新日期:2015-06-01 00:00:00

  • Recent advances in assessing gene flow between diverging populations and species.

    abstract::The evolutionary process of divergence, which ultimately leads to the generation of new species, is thought to occur usually without any gene exchange between the diverging populations. However, until the recent growth of multi-locus datasets, and the development of new population genetic methods, it has been very dif...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2006.10.005

    authors: Hey J

    更新日期:2006-12-01 00:00:00

  • Liquid-like behavior of chromatin.

    abstract::Eukaryotic chromatin is a negatively charged long polymer composed of genomic DNA, histones, and various proteins. The charged property causes the chromatin structure to be dynamically changed. These dynamic changes are critical for genome functions such as gene expression because they directly govern the degree of DN...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2015.11.006

    authors: Maeshima K,Ide S,Hibino K,Sasai M

    更新日期:2016-04-01 00:00:00

  • An update and lessons from whole-genome sequencing projects.

    abstract::A number of prokaryotic and eukaryotic genomes are currently being sequenced. Already, the nucleotide sequences of four yeast chromosomes and of 2.2 Mb from Caenorhabditis elegans have been reported. Human genomic sequences have also been used in comparative studies with both mouse and Fugu rubripes. ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/0959-437x(95)80050-6

    authors: Jones SJ

    更新日期:1995-06-01 00:00:00

  • Congenital nephrotic syndromes.

    abstract::Many acquired and familial renal diseases in man lead to kidney dysfunction and nephrotic syndrome. These diseases share a common pathological fate in the form of glomerular dysfunction and proteinuria. Classification of the disease is difficult because the onset of pathological appearance in congenital nephrotic synd...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(00)00197-0

    authors: Khoshnoodi J,Tryggvason K

    更新日期:2001-06-01 00:00:00

  • Notch signaling: direct or what?

    abstract::Notch signaling has been implicated in a wide variety of processes from cell-fate decisions, tissue patterning and morphogenesis to human diseases and cancer. A model for Notch directly regulating gene expression has been proposed and at least two signaling pathways have been identified; however, the molecular mechani...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(98)80115-9

    authors: Weinmaster G

    更新日期:1998-08-01 00:00:00

  • Non-insect crustacean models in developmental genetics including an encomium to Parhyale hawaiensis.

    abstract::The impressive diversity of body plans, lifestyles and segmental specializations exhibited by crustaceans (barnacles, copepods, shrimps, crabs, lobsters and their kin) provides great material to address longstanding questions in evolutionary developmental biology. Recent advances in forward and reverse genetics and in...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2016.07.004

    authors: Stamataki E,Pavlopoulos A

    更新日期:2016-08-01 00:00:00

  • Spotting the target: microarrays for disease gene discovery.

    abstract::Microarray technologies enable genome-scale expression measurements. Already proved to be of value for the functional analysis of individual genes and biological processes, the application of expression profiling to disease gene discovery is now growing in importance and practicality. ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(00)00187-8

    authors: Meltzer PS

    更新日期:2001-06-01 00:00:00

  • Routes to induced pluripotent stem cells.

    abstract::The generation of induced pluripotent stem cells (iPSCs) with Oct4, Sox2, Klf4, c-Myc has been described as 'direct' reprogramming in contrast to reprogramming via nuclear transfer. Interestingly, recent studies have suggested that the conversion process itself includes transient up-regulation and down-regulation of h...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2014.08.006

    authors: Ruetz T,Kaji K

    更新日期:2014-10-01 00:00:00

  • Vertebrate craniofacial development: novel approaches and new dilemmas.

    abstract::Unexpected patterns of neuroblast, angioblast and myoblast movement and tissue organization have been defined using lineage tracing and transplantation methods. The most novel and enigmatic new data derive from analyses of genes in the Hox- and Pax-gene families. In addition to the characterization of expression patte...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(05)80175-3

    authors: Noden DM

    更新日期:1992-08-01 00:00:00

  • The critical needs and challenges for genetic architecture studies in Africa.

    abstract::Human genetic studies have long been vastly Eurocentric, raising a key question about the generalizability of these study findings to other populations. Because humans originated in Africa, these populations retain more genetic diversity, and yet individuals of African descent have been tremendously underrepresented i...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2018.08.005

    authors: Martin AR,Teferra S,Möller M,Hoal EG,Daly MJ

    更新日期:2018-12-01 00:00:00

  • Divergent and combinatorial mechanical strategies that promote epithelial folding during morphogenesis.

    abstract::Folding is an important way by which epithelia are sculpted into three-dimensional shapes during development. Recent studies have integrated quantitative image analysis and physical modeling to uncover contributing mechanisms. It is becoming clear that folding processes often employ multiple mechanisms of force genera...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2020.02.014

    authors: Denk-Lobnig M,Martin AC

    更新日期:2020-08-01 00:00:00

  • The dawn of non-human primate models for neurodevelopmental disorders.

    abstract::Non-human primates (NHPs) have been proposed as good models for neurodevelopmental disorders due to close similarities to humans in terms of brain structure and cognitive function. The recent development of genome editing technologies has opened new avenues to generate and investigate genetically modified NHPs as mode...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2020.05.040

    authors: Aida T,Feng G

    更新日期:2020-12-01 00:00:00