The critical needs and challenges for genetic architecture studies in Africa.

Abstract:

:Human genetic studies have long been vastly Eurocentric, raising a key question about the generalizability of these study findings to other populations. Because humans originated in Africa, these populations retain more genetic diversity, and yet individuals of African descent have been tremendously underrepresented in genetic studies. The diversity in Africa affords ample opportunities to improve fine-mapping resolution for associated loci, discover novel genetic associations with phenotypes, build more generalizable genetic risk prediction models, and better understand the genetic architecture of complex traits and diseases subject to varying environmental pressures. Thus, it is both ethically and scientifically imperative that geneticists globally surmount challenges that have limited progress in African genetic studies to date. Additionally, African investigators need to be meaningfully included, as greater inclusivity and enhanced research capacity afford enormous opportunities to accelerate genomic discoveries that translate more effectively to all populations. We review the advantages, challenges, and examples of genetic architecture studies of complex traits and diseases in Africa. For example, with greater genetic diversity comes greater ancestral heterogeneity; this higher level of understudied diversity can yield novel genetic findings, but some methods that assume homogeneous population structure and work well in European populations may work less well in the presence of greater heterogeneity in African populations. Consequently, we advocate for methodological development that will accelerate studies important for all populations, especially those currently underrepresented in genetics.

journal_name

Curr Opin Genet Dev

authors

Martin AR,Teferra S,Möller M,Hoal EG,Daly MJ

doi

10.1016/j.gde.2018.08.005

subject

Has Abstract

pub_date

2018-12-01 00:00:00

pages

113-120

eissn

0959-437X

issn

1879-0380

pii

S0959-437X(18)30055-8

journal_volume

53

pub_type

杂志文章,评审
  • Microsatellites and their application to population genetic studies.

    abstract::Microsatellites may soon become the markers of choice for molecular population genetic studies. However, our knowledge of these simple repetitive sequences and how they evolve in natural populations is far from complete. We highlight some recent results of population studies and advances in our ability to interpret so...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/0959-437x(93)90017-j

    authors: Bruford MW,Wayne RK

    更新日期:1993-12-01 00:00:00

  • Barrett's metaplasia as a paradigm for understanding the development of cancer.

    abstract::The conversion of one cell type to another is defined as metaplasia (or sometimes it is referred to as transdifferentiation or cellular reprogramming). Metaplasia is important clinically and may predispose to the development of cancer. Barrett's metaplasia is one such example and is the focus of the present review. Ba...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2012.08.001

    authors: Burke ZD,Tosh D

    更新日期:2012-10-01 00:00:00

  • Statistical methods for detecting admixture.

    abstract::The increasing availability of large-scale autosomal genetic variation data sampled from world-wide geographic areas, coupled with advances in the statistical methodology to analyse these data, is showcasing the power of DNA as a major tool to gain insights into the demographic history of humans and other organisms. H...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2018.08.002

    authors: Wangkumhang P,Hellenthal G

    更新日期:2018-12-01 00:00:00

  • Somatic variants in epilepsy - advancing gene discovery and disease mechanisms.

    abstract::In the past ten years, there has been increasing recognition that cells can acquire genetic variants during cortical development that can give rise to brain malformations as well as nonlesional focal epilepsy. These often brain tissue-specific, de novo variants can result in highly variable phenotypes based on the bur...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2020.04.004

    authors: Heinzen EL

    更新日期:2020-12-01 00:00:00

  • Functional impact of the human mobilome.

    abstract::The human genome is replete with interspersed repetitive sequences derived from the propagation of mobile DNA elements. Three families of human retrotransposons remain active today: LINE1, Alu, and SVA elements. Since 1988, de novo insertions at previously recognized disease loci have been shown to generate highly pen...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2013.02.007

    authors: Babatz TD,Burns KH

    更新日期:2013-06-01 00:00:00

  • Fibrillln mutations in Marfan syndrome and related phenotypes.

    abstract::A casual association has been established between mutations in the fibrillin 1 gene and Marfan syndrome and related phenotypes. Analysis of mutations in these disease types has provided new insights into microfibril assembly and function. These include evidence for a mutation in a fibrillin 1 domain associated with se...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(96)80007-4

    authors: Ramirez F

    更新日期:1996-06-01 00:00:00

  • The evolving role of cancer cell line-based screens to define the impact of cancer genomes on drug response.

    abstract::Over the last decade we have witnessed the convergence of two powerful experimental designs toward a common goal of defining the molecular subtypes that underpin the likelihood of a cancer patient responding to treatment in the clinic. The first of these 'experiments' has been the systematic sequencing of large number...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2013.12.002

    authors: Garnett MJ,McDermott U

    更新日期:2014-02-01 00:00:00

  • The dawn of non-human primate models for neurodevelopmental disorders.

    abstract::Non-human primates (NHPs) have been proposed as good models for neurodevelopmental disorders due to close similarities to humans in terms of brain structure and cognitive function. The recent development of genome editing technologies has opened new avenues to generate and investigate genetically modified NHPs as mode...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2020.05.040

    authors: Aida T,Feng G

    更新日期:2020-12-01 00:00:00

  • Spatiotemporal mechanisms of morphogen gradient interpretation.

    abstract::Few mechanistic ideas from the pre-molecular era of biology have had as enduring an impact as the morphogen concept. In the classical view, cells in developing embryos obtain positional information by measuring morphogen concentrations and comparing them with fixed concentration thresholds; as a result, graded morphog...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2011.10.002

    authors: Nahmad M,Lander AD

    更新日期:2011-12-01 00:00:00

  • Watching eyes take shape.

    abstract::Vertebrate eye formation is a multistep process requiring coordinated inductive interactions between neural and non-neural ectoderm and underlying mesendoderm. The induction and shaping of the eyes involves an elaborate cellular choreography characterized by precise changes in cell shape coupled with complex cellular ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2015.02.004

    authors: Bazin-Lopez N,Valdivia LE,Wilson SW,Gestri G

    更新日期:2015-06-01 00:00:00

  • Gene conversion generates evolutionary novelty that fuels genetic conflicts.

    abstract::Genetic conflicts arise when the evolutionary interests of two genetic elements are not aligned. Conflicts between genomes (e.g. pathogen versus host) or within the same genome (e.g. internal parasitic DNA sequences versus the rest of the host genome) can both foster 'molecular arms races', in which genes on both side...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2019.07.011

    authors: Daugherty MD,Zanders SE

    更新日期:2019-10-01 00:00:00

  • The PML nuclear bodies: actors or extras?

    abstract::The PML and SP100-containing nuclear bodies (NBs) represent the best-studied example of a defined nuclear substructure the integrity of which is compromised in certain human diseases, including leukemia, neurodegenerative disorders and viral infection. Although recent progress has underscored the unexpectedly broad in...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(99)80054-9

    authors: Seeler JS,Dejean A

    更新日期:1999-06-01 00:00:00

  • ChIPs of the beta-globin locus: unraveling gene regulation within an active domain.

    abstract::Recent studies of beta-globin gene expression have concentrated on the analysis of factor binding and chromatin structure within the endogenous locus. These studies have more precisely defined the extent and nature of the active chromosomal domain and the elements that organize it. Surprisingly, the beta-globin locus ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(02)00283-6

    authors: Bulger M,Sawado T,Schübeler D,Groudine M

    更新日期:2002-04-01 00:00:00

  • Natural diversity facilitates the discovery of conserved chemotherapeutic response mechanisms.

    abstract::Organismal fitness depends on adaptation to complex niches where chemical compounds and pathogens are omnipresent. These stresses can lead to the fixation of alleles in both xenobiotic responses and proliferative signaling pathways that promote survival in these niches. However, both xenobiotic responses and prolifera...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2017.08.002

    authors: Zdraljevic S,Andersen EC

    更新日期:2017-12-01 00:00:00

  • Choose your fate: artery, vein or lymphatic vessel?

    abstract::The specification of cell fate is integral to embryonic development. Recent research has identified several molecules that are involved in the development of the embryonic vasculature. Their combined actions are required for the specification and development of the arteries, veins and lymphatic vessels; vascular netwo...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2004.07.005

    authors: Harvey NL,Oliver G

    更新日期:2004-10-01 00:00:00

  • Dysregulated translational control in brain disorders: from genes to behavior.

    abstract::Control of protein synthesis (mRNA translation) is essential for proper brain development and function. Perturbations to the mechanisms governing mRNA translation have repeatedly been shown to constitute a neurodegenerative, neuropsychiatric, and neurodevelopmental disorder risk factor. Developing effective therapeuti...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2020.05.005

    authors: Wiebe S,Nagpal A,Sonenberg N

    更新日期:2020-12-01 00:00:00

  • Epigenetic regulation of mouse preimplantation embryo development.

    abstract::After fertilization, mouse embryos go through preimplantation development to give rise to blastocyst. Two key molecular events, zygotic genome activation (ZGA) and the first cell lineage specification, are essential for the process. Recent advances in low-input epigenomics profiling techniques allow the analysis of th...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2020.05.015

    authors: Fu X,Zhang C,Zhang Y

    更新日期:2020-10-01 00:00:00

  • TFIIH: a key component in multiple DNA transactions.

    abstract::The transcription factor TFIIH is a versatile, multi-functional protein complex with multiple engagements. Apart from its role in basal transcription, TFIIH is intimately implicated in DNA repair and (probably) in cell cycle control (both of which are required to prevent carcinogenesis) as well as having possible role...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(96)90006-4

    authors: Hoeijmakers JH,Egly JM,Vermeulen W

    更新日期:1996-02-01 00:00:00

  • The retinoblastoma tumor suppressor protein.

    abstract::Loss of the retinoblastoma protein, pRb, appears to have a role in several human tumor types. Mice lacking pRb have been produced as models of human disease, but have a different spectrum of affected tissues. Recent work shows that the tumorigenic effects of pRb may be revealed only after additional genetic alteration...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(95)90057-8

    authors: Hinds PW

    更新日期:1995-02-01 00:00:00

  • Sex determination in insects: a binary decision based on alternative splicing.

    abstract::The gene regulatory networks that control sex determination vary between species. Despite these differences, comparative studies in insects have found that alternative splicing is reiteratively used in evolution to control expression of the key sex-determining genes. Sex determination is best understood in Drosophila ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2011.03.001

    authors: Salz HK

    更新日期:2011-08-01 00:00:00

  • Multipotentiality of the neural crest.

    abstract::Multiple neural and non-neural cell types arise from the neural crest (NC) in vertebrate embryos. Recent work has provided evidence for multipotent stem cells and intermediate precursors in the early NC cell population as well as in various NC derivatives in embryos and even in adult. Advances have been made towards u...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2003.08.002

    authors: Le Douarin NM,Dupin E

    更新日期:2003-10-01 00:00:00

  • Regulation of the HNF-1 homeodomain proteins by DCoH.

    abstract::The pattern of expression of homeodomain proteins often exceeds their apparent domain of activity. Tissue-specific proteins that modulate the in vivo activity of homeodomain proteins have been proposed to account for this functional restriction. The first identified example of such an accessory protein is DCoH, which ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/0959-437x(93)90030-s

    authors: Hansen LP,Crabtree GR

    更新日期:1993-04-01 00:00:00

  • Assisting Hox proteins in controlling body form: are there new lessons from flies (and mammals)?

    abstract::Hox proteins regulate specific sets of target genes to give rise to morphological distinctions along the anterior-posterior body axis of metazoans. Though they have high developmental specificity, Hox proteins have low DNA binding specificity, so how they select the appropriate target genes has remained enigmatic. The...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2005.06.009

    authors: Mahaffey JW

    更新日期:2005-08-01 00:00:00

  • Lessons on immune tolerance from the monogenic disease APS1.

    abstract::Autoimmunity is a complex disease process that results from a breakdown in the ability of the immune system to discriminate self from non-self. One approach to unraveling how autoimmunity occurs is to study monogenic diseases, for which a single gene defect is responsible. Recent work on the monogenic autoimmune disea...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2007.04.001

    authors: DeVoss JJ,Anderson MS

    更新日期:2007-06-01 00:00:00

  • Bovine genome mapping: evolutionary inference and the power of comparative genomics.

    abstract::All bovine chromosomes are now represented by a syntenic group, a linkage map and at least one in situ hybridization. Almost 1,000 loci are mapped, about 300 of which are coding sequences useful for comparative mapping and evolutionary inference. Economically important loci are beginning to appear on bovine linkage ma...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/0959-437x(95)80004-o

    authors: Womack JE,Kata SR

    更新日期:1995-12-01 00:00:00

  • AngiomiRs--key regulators of angiogenesis.

    abstract::The formation of new blood vessels through the process of angiogenesis is critical in vascular development and homeostasis. Aberrant angiogenesis leads to a variety of diseases, such as ischemia and cancer. Recent studies have revealed important roles for miRNAs in regulating endothelial cell (EC) function, especially...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2009.04.002

    authors: Wang S,Olson EN

    更新日期:2009-06-01 00:00:00

  • Baculoviruses: high-level expression in insect cells.

    abstract::Baculoviruses continue to serve as workhorse vectors for the high-level expression of eukaryotic genes in insect cells; however, numerous researchers are also finding novel uses for these vectors by taking advantage of the unique nature of the viruses and their host cells. Concurrently, the technology involved in cons...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(05)80348-x

    authors: Miller LK

    更新日期:1993-02-01 00:00:00

  • Vertebrate craniofacial development: novel approaches and new dilemmas.

    abstract::Unexpected patterns of neuroblast, angioblast and myoblast movement and tissue organization have been defined using lineage tracing and transplantation methods. The most novel and enigmatic new data derive from analyses of genes in the Hox- and Pax-gene families. In addition to the characterization of expression patte...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(05)80175-3

    authors: Noden DM

    更新日期:1992-08-01 00:00:00

  • Physical control of tissue morphogenesis across scales.

    abstract::During embryogenesis, tissues and organs are progressively shaped into their functional morphologies. While the information about tissue and organ shape is encoded genetically, the sculpting of embryonic structures in the 3D space is ultimately a physical process. The control of physical quantities involved in tissue ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2018.09.002

    authors: Stooke-Vaughan GA,Campàs O

    更新日期:2018-08-01 00:00:00

  • Allele-specific expression: applications in cancer and technical considerations.

    abstract::Allele-specific gene expression can influence disease traits. Non-coding germline genetic variants that alter regulatory elements can cause allele-specific gene expression and contribute to cancer susceptibility. In tumors, both somatic copy number alterations and somatic single nucleotide variants have been shown to ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2020.10.007

    authors: Robles-Espinoza CD,Mohammadi P,Bonilla X,Gutierrez-Arcelus M

    更新日期:2020-12-28 00:00:00