In silico analysis of Clostridium acetobutylicum ATCC 824 metabolic response to an external electron supply.

Abstract:

:The biological production of butanol has become an important research field and thanks to genome sequencing and annotation; genome-scale metabolic reconstructions have been developed for several Clostridium species. This work makes use of the iCAC490 model of Clostridium acetobutylicum ATCC 824 to analyze its metabolic capabilities and response to an external electron supply through a constraint-based approach using the Constraint-Based Reconstruction Analysis Toolbox. Several analyses were conducted, which included sensitivity, production envelope, and phenotypic phase planes. The model showed that the use of an external electron supply, which acts as co-reducing agent along with glucose-derived reducing power (electrofermentation), results in an increase in the butanol-specific productivity. However, a proportional increase in the butyrate uptake flux is required. Besides, the uptake of external butyrate leads to the coupling of butanol production and growth, which coincides with results reported in literature. Phenotypic phase planes showed that the reducing capacity becomes more limiting for growth at high butyrate uptake fluxes. An electron uptake flux allows the metabolism to reach the growth optimality line. Although the maximum butanol flux does not coincide with the growth optimality line, a butyrate uptake combined with an electron uptake flux would result in an increased butanol volumetric productivity, being a potential strategy to optimize the production of butanol by C. acetobutylicum ATCC 824.

journal_name

Bioprocess Biosyst Eng

authors

Gallardo R,Acevedo A,Quintero J,Paredes I,Conejeros R,Aroca G

doi

10.1007/s00449-015-1513-5

subject

Has Abstract

pub_date

2016-02-01 00:00:00

pages

295-305

issue

2

eissn

1615-7591

issn

1615-7605

pii

10.1007/s00449-015-1513-5

journal_volume

39

pub_type

杂志文章
  • Quantitative analysis of hydrogen peroxide with special emphasis on biosensors.

    abstract::Determination of hydrogen peroxide (H2O2) has become essential in pharmaceutical, biological, clinical and environmental studies. The conventional detection methods of H2O2 such as colourimetry, titration, chromatography, spectrophotometry, fluorimetry, chemiluminescence have limited success, due to their poor selecti...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章,评审

    doi:10.1007/s00449-017-1878-8

    authors: Pundir CS,Deswal R,Narwal V

    更新日期:2018-03-01 00:00:00

  • Process optimization of xylanase production using cheap solid substrate by Trichoderma reesei SAF3 and study on the alteration of behavioral properties of enzyme obtained from SSF and SmF.

    abstract::This study aimed to assess the variability in respect of titer and properties of xylanase from Trichoderma reesei SAF3 under both solid-state and submerged fermentation. SSF was initially optimized with different agro-residues and among them wheat bran was found to be the best substrate that favored maximum xylanase p...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-012-0761-x

    authors: Kar S,Sona Gauri S,Das A,Jana A,Maity C,Mandal A,Das Mohapatra PK,Pati BR,Mondal KC

    更新日期:2013-01-01 00:00:00

  • Population heterogeneity in microbial bioprocesses: origin, analysis, mechanisms, and future perspectives.

    abstract::Population heterogeneity is omnipresent in all bioprocesses even in homogenous environments. Its origin, however, is only so well understood that potential strategies like bet-hedging, noise in gene expression and division of labour that lead to population heterogeneity can be derived from experimental studies simulat...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章,评审

    doi:10.1007/s00449-018-1922-3

    authors: Heins AL,Weuster-Botz D

    更新日期:2018-07-01 00:00:00

  • Reaction rate constants and mean population percentage for nitrifiers in an alternating oxidation ditch system.

    abstract::This paper presents a methodology for the determination of reaction rate constants for nitrifying bacteria and their mean population percentage in biomass in an alternating oxidation ditch system. The method used is based on the growth rate equations of the ASM1 model (IWA) (Henze et al. in Activated sludge models ASM...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-010-0446-2

    authors: Mantziaras ID,Katsiri A

    更新日期:2011-01-01 00:00:00

  • Hydrogen sulfide formation as well as ethanol production in different media by cysND- and/or cysIJ-inactivated mutant strains of Zymomonas mobilis ZM4.

    abstract::Many bacteria reduce inorganic sulfate to sulfide to satisfy their need for sulfur, one of the most important elements for biological life. But little is known about the metabolic pathways involving hydrogen sulfide (H₂S) in mesophilic bacteria. By genomic sequence analysis, a complete set of genes for the assimilator...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-012-0839-5

    authors: Tan T,Liu C,Liu L,Zhang K,Zou S,Hong J,Zhang M

    更新日期:2013-10-01 00:00:00

  • Regulation of docosahexaenoic acid production by Schizochytrium sp.: effect of nitrogen addition.

    abstract::Docosahexaenoic acid (DHA) percentage in total fatty acids (TFAs) is an important index in DHA microbial production. In this study, the change of DHA percentage in response to fermentation stages and the strategies to increase DHA percentage were investigated. Two kinds of conventional nitrogen sources, monosodium glu...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-013-1057-5

    authors: Ren LJ,Sun LN,Zhuang XY,Qu L,Ji XJ,Huang H

    更新日期:2014-05-01 00:00:00

  • Acetone-butanol-ethanol production from corn stover pretreated by alkaline twin-screw extrusion pretreatment.

    abstract::In this study, the alkaline twin-screw extrusion pretreated corn stover was subjected to enzymatic hydrolysis after washing. The impact of solid loading and enzyme dose on enzymatic hydrolysis was investigated. It was found that 68.2 g/L of total fermentable sugar could be obtained after enzymatic hydrolysis with the ...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-013-1063-7

    authors: Zhang Y,Hou T,Li B,Liu C,Mu X,Wang H

    更新日期:2014-05-01 00:00:00

  • A general inhibition kinetics model for ethanol production using a novel carbon source: sodium gluconate.

    abstract::In this study, sodium gluconate was applied as a novel carbon source for the fuel ethanol production using an engineered Escherichia coli strain KO11 in batch fermentations. Ethanol and acetic acid were produced as two major products as well as small amount of lactic acid during the fermentation. Compared to the conve...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-013-0938-y

    authors: Wu W,Fan Z

    更新日期:2013-11-01 00:00:00

  • Steam explosion (SE) and instant controlled pressure drop (DIC) as thermo-hydro-mechanical pretreatment methods for bioethanol production.

    abstract::Lignocellulosic biomass can be considered as one of the largest sources for the production of renewable biofuels (bioethanol). It involves an enzymatic treatment capable of ensuring the depolymerization of cellulose into fermentable sugars, followed by the production of ethanol by appropriate bacteriological fermentat...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章,评审

    doi:10.1007/s00449-020-02297-6

    authors: Smichi N,Messaoudi Y,Allaf K,Gargouri M

    更新日期:2020-06-01 00:00:00

  • A novel serine alkaline protease from Bacillus altitudinis GVC11 and its application as a dehairing agent.

    abstract::A serine alkaline protease from a newly isolated alkaliphilic Bacillus altitudinis GVC11 was purified and characterized. The enzyme was purified to homogeneity by acetone precipitation, DEAE-cellulose anion exchange chromatography with 7.03-fold increase in specific activity and 15.25% recovery. The molecular weight o...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-010-0483-x

    authors: Vijay Kumar E,Srijana M,Kiran Kumar K,Harikrishna N,Reddy G

    更新日期:2011-05-01 00:00:00

  • Improvement of kojic acid production in Aspergillus oryzae B008 mutant strain and its uses in fermentation of concentrated corn stalk hydrolysate.

    abstract::A strain designated M866, producing kojic acid with a high yield, was obtained by combining induced mutation using ion beam implantation and ethyl methane sulfonate treatment of a wild type strain of Aspergillus oryzae B008. The amount of kojic acid produced by the strain M866 in a shaking flask was 40.2 g/L from 100 ...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-013-1081-5

    authors: Yan S,Tang H,Wang S,Xu L,Liu H,Guo Y,Yao J

    更新日期:2014-06-01 00:00:00

  • Use of saline waste water from demineralization of cheese whey for cultivation of Schizochytrium limacinum PA-968 and Japonochytrium marinum AN-4.

    abstract::Saline waste water from demineralization of cheese whey was used as the main component of waste saline medium (WSM) for cultivation of thraustochytrids. The suitability of WSM for cultivation of Schizochytrium limacinum PA-968 and Japonochytrium marinum AN-4 was evaluated by comparison with cultivation on nutrient med...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-016-1707-5

    authors: Humhal T,Kastanek P,Jezkova Z,Cadkova A,Kohoutkova J,Branyik T

    更新日期:2017-03-01 00:00:00

  • High-level extracellular production of D-Psicose-3-epimerase with recombinant Escherichia coli by a two-stage glycerol feeding approach.

    abstract::The aim of this study is to achieve high-level extracellular production of D-Psicose-3-epimerase (DPE) with recombinant Escherichia coli. High-level production of DPE is one of the key factors in D-Psicose production. In the present study, the gene AAL45544.1 from Agrobacterium tumefaciens str. C58 was modified by art...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-013-0952-0

    authors: Gu L,Zhang J,Liu B,Wu C,Du G,Chen J

    更新日期:2013-11-01 00:00:00

  • Comprehensive assessment of the L-lysine production process from fermentation of sugarcane molasses.

    abstract::L-Lysine is an essential amino acid that can be produced by chemical processes from fossil raw materials, as well as by microbial fermentation, the latter being a more efficient and environmentally friendly procedure. In this work, the production process of L-lysine-HCl is studied using a systematic approach based on ...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-017-1766-2

    authors: Anaya-Reza O,Lopez-Arenas T

    更新日期:2017-07-01 00:00:00

  • Immobilization of horseradish peroxidase onto kaolin.

    abstract::Kaolin showed as a very perspective carrier for the enzyme immobilization and it was used for the adsorption of horseradish peroxidase (HRP). The effects of the enzyme concentration and pH on the immobilization efficiency were studied in the reaction with pyrogallol and anthraquinone dye C.I. Acid Violet 109 (AV 109)....

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-015-1529-x

    authors: Šekuljica NŽ,Prlainović NŽ,Jovanović JR,Stefanović AB,Djokić VR,Mijin DŽ,Knežević-Jugović ZD

    更新日期:2016-03-01 00:00:00

  • Assessment and parameter identification of simplified models to describe the kinetics of semi-continuous biomethane production from anaerobic digestion of green and food waste.

    abstract::Biochemical reactions occurring during anaerobic digestion have been modelled using reaction kinetic equations such as first-order, Contois and Monod which are then combined to form mechanistic models. This work considers models which include between one and three biochemical reactions to investigate if the choice of ...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-016-1577-x

    authors: Owhondah RO,Walker M,Ma L,Nimmo B,Ingham DB,Poggio D,Pourkashanian M

    更新日期:2016-06-01 00:00:00

  • Bioprocessing of wheat and paddy straw for their nutritional up-gradation.

    abstract::Solid-state bioprocessing of agricultural residues seems to be an emerging and effective method for the production of high quality animal feed. Seven strains of white-rot fungi were selected to degrade wheat and paddy straw (PS) under solid-state conditions. Degradation of different components, i.e., hemicellulose, ce...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-013-1116-y

    authors: Sharma RK,Arora DS

    更新日期:2014-07-01 00:00:00

  • Poly(styrene-divinylbenzene) beads surface functionalized with di-block polymer grafting and multi-modal ligand attachment: performance of reversibly immobilized lipase in ester synthesis.

    abstract::Fibrous poly(styrene-b-glycidylmethacrylate) brushes were grafted on poly(styrene-divinylbenzene) (P(S-DVB)) beads using surface-initiated atom transfer radical polymerization. Tetraethyldiethylenetriamine (TEDETA) ligand was incorporated on P(GMA) block. The ligand attached beads were used for reversible immobilizati...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-011-0523-1

    authors: Bayramoglu G,Karagoz B,Altintas B,Arica MY,Bicak N

    更新日期:2011-08-01 00:00:00

  • Ca2+ increases the specific coenzyme Q10 content in Agrobacterium tumefaciens.

    abstract::Of various metal ions (Ca2+, Cr3+, Cu2+, Fe2+, Mg2+, Mn2+, Ni2+ and Zn2+) added to the culture medium of Agrobacterium tumefaciens at 1 mM, only Ca2+ increased Coenzyme Q10 (CoQ(10)) content in cells without the inhibition of cell growth. In a pH-stat fed-batch culture, supplementation with 40 mM of CaCO3 increased th...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-009-0318-9

    authors: Ha SJ,Kim SY,Seo JH,Jeya M,Zhang YW,Ramu T,Kim IW,Lee JK

    更新日期:2009-08-01 00:00:00

  • Fed-batch polyhydroxybutyrate production by Paraburkholderia sacchari from a ternary mixture of glucose, xylose and arabinose.

    abstract::Polyhydroxybutyrate (PHB) is a biodegradable bioplastic that is comparable with many petroleum-based plastics in terms of mechanical properties and is highly biocompatible. Lignocellulosic biomass conversion into PHB can increase profit and add sustainability. Glucose, xylose and arabinose are the main monomer sugars ...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-020-02434-1

    authors: Li M,Wilkins MR

    更新日期:2021-01-01 00:00:00

  • Strategies for efficient repetitive production of succinate using metabolically engineered Escherichia coli.

    abstract::Escherichia coli AFP111, a pflB, ldhA, ptsG triple mutant of E. coli W1485, can be recovered for additional succinate production in fresh medium after two-stage fermentation (an aerobic growth stage followed by an anaerobic production stage). However, the specific productivity is lower than that of two-stage fermentat...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-010-0484-9

    authors: Ma JF,Jiang M,Chen KQ,Xu B,Liu SW,Wei P,Ying HJ,Chang HN,Ouyang PK

    更新日期:2011-05-01 00:00:00

  • Characterization of a commercial cellulase for hydrolysis of agroindustrial substrates.

    abstract::This work is focused on the characterization of a commercial cellulase in terms of optimum pH and temperature, stability to pH and temperature and affinity of this enzyme to several substrates, determining the Michaelis-Menten parameters. Maximum activity of cellulase was obtained for the temperature range from 40 to ...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-012-0710-8

    authors: Balsan G,Astolfi V,Benazzi T,Meireles MA,Maugeri F,Di Luccio M,Dal Prá V,Mossi AJ,Treichel H,Mazutti MA

    更新日期:2012-09-01 00:00:00

  • Simultaneous organics removal and bio-electrochemical denitrification in microbial fuel cells.

    abstract::Simultaneous organics removal and bio-electrochemical denitrification using a microbial fuel cell (MFC) reactor were investigated in this study. The electrons produced as a result of the microbial oxidation of glucose in the anodic chamber were transferred to the anode, which then flowed to the cathode in the cathodic...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-007-0164-6

    authors: Jia YH,Tran HT,Kim DH,Oh SJ,Park DH,Zhang RH,Ahn DH

    更新日期:2008-06-01 00:00:00

  • Kinetic models of ribonucleic acid fermentation and continuous culture by Candida tropicalis no.121.

    abstract::During ribonucleic acid fermentation, the fermentative processes were researched at pH controlled at 4.0 and under natural conditions. Unstructured models in a 50-L airlift fermentor were established for batch RNA production at pH 4.0 using the Verhulst equation for microbial growth, the Luedeking-Piret equation for p...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-011-0580-5

    authors: Li B,Chen X,Ren H,Li L,Xiong J,Bai J,Chen Y,Wu J,Ying H

    更新日期:2012-03-01 00:00:00

  • Identification of reaction networks for bioprocesses: determination of a partially unknown pseudo-stoichiometric matrix.

    abstract::In this paper we propose a methodology to determine the structure of the pseudo-stoichiometric coefficient matrix K in a mass balance-based model and to identify its coefficients from a set of available data. The first stage consists in estimating the number of reactions that must be taken into account to represent th...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-005-0407-3

    authors: Bernard O,Bastin G

    更新日期:2005-08-01 00:00:00

  • A comprehensive study on volatile fatty acids production from rice straw coupled with microbial community analysis.

    abstract::Rice straw is one of the most abundant renewable energy sources available. Through anaerobic acidogenesis, the substance of rice straw can be converted to volatile fatty acids (VFAs). VFAs itself is of value and is a precursor to biofuels. Hence, it can be converted to mixed alcohols by addition of hydrogen, and biodi...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-015-1357-z

    authors: Park GW,Seo C,Jung K,Chang HN,Kim W,Kim YC

    更新日期:2015-06-01 00:00:00

  • Asymmetric synthesis of tert-butyl (3R,5S)-6-chloro-3,5-dihydroxyhexanoate using a self-sufficient biocatalyst based on carbonyl reductase and cofactor co-immobilization.

    abstract::tert-Butyl (3R,5S)-6-chloro-3,5-dihydroxyhexanoate [(3R,5S)-CDHH] is the key chiral intermediate to synthesize the side chain of the lipid-lowering drug rosuvastatin. Carbonyl reductases showed excellent activity for the biosynthesis of (3R,5S)-CDHH. The requirement of cofactor NADH/NADPH leads to high cost for the in...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-019-02201-x

    authors: Zhang XJ,Wang WZ,Zhou R,Liu ZQ,Zheng YG

    更新日期:2020-01-01 00:00:00

  • Optimization and production of pyrrolidone antimicrobial agent from marine sponge-associated Streptomyces sp. MAPS15.

    abstract::Twenty-nine actinobacterial strains were isolated from marine sponge Spongia officinalis and screened for antagonistic activity against various bacterial and fungal pathogens. The active antibiotic producer MAPS15 was identified as Streptomyces sp. using 16S rRNA phylogenetic analysis. The critical control factors wer...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-013-1023-2

    authors: Sathiyanarayanan G,Gandhimathi R,Sabarathnam B,Seghal Kiran G,Selvin J

    更新日期:2014-03-01 00:00:00

  • Control of endotoxin release in Escherichia coli fed-batch cultures.

    abstract::High amounts of outer membrane (OM) components were released in glucose-limited fed-batch (GLFB) cultures at 37 degrees C at specific growth rates approaching 0.05 h(-1). Endotoxin analyses from a 20 degrees C GLFB culture gave similar results. An alternative fermentation technique, the temperature-limited fed-batch (...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-004-0377-x

    authors: Svensson M,Han L,Silfversparre G,Häggström L,Enfors SO

    更新日期:2005-04-01 00:00:00

  • Biological nitrogen and phosphorus removal in membrane bioreactors: model development and parameter estimation.

    abstract::Membrane bioreactors (MBR) are being increasingly used for wastewater treatment. Mathematical modeling of MBR systems plays a key role in order to better explain their characteristics. Several MBR models have been presented in the literature focusing on different aspects: biological models, models which include solubl...

    journal_title:Bioprocess and biosystems engineering

    pub_type: 杂志文章

    doi:10.1007/s00449-012-0806-1

    authors: Cosenza A,Mannina G,Neumann MB,Viviani G,Vanrolleghem PA

    更新日期:2013-04-01 00:00:00