DNA cross-linking by intermediates in the mitomycin activation cascade.

Abstract:

:We have assayed the cross-linking of oligonucleotides containing repeated mitomycin-reactive CpG sites in order to assess the factors that enhance activation of the carbamoyl function at C10, yielding efficient mitomycin cross-linking. Drugs studied include mitomycin C (MC), N-methylmitomycin A (NMA), and the aziridinomitosene of NMA (MS). Drugs were reduced both by catalytic hydrogenation and by diothionite. We find that cross-linking by fully reduced NMA can be increased severalfold by addition of either excess dithionite reductant or the oxidant FeCl3. Enhancement by FeCl3 is not seen with MC or MS, but excess dithionite increases cross-linking by all three compounds. We explain the action of Fe3+ by postulating production of the semiquinone of the monoadduct of mitomycin reacted at the C1-position; according to this mechanism, departure of the carbamate from C10 is more efficient for the semiquinone than for the hydroquinone. However, our results imply that the hydroquinone can also function as a cross-linking agent. Excess dithionite, beyond that required for stoichiometric reduction, activates the carbamate 2-3-fold for cross-linking. We find that the fully reduced leucoaziridinomitosene is highly unstable in solution, yet it produces efficient cross-liking. Hence, this compound is highly reactive in DNA alkylation and a good candidate for the role of primary alkylating agent.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Cera C,Egbertson M,Teng SP,Crothers DM,Danishefsky SJ

doi

10.1021/bi00439a049

subject

Has Abstract

pub_date

1989-06-27 00:00:00

pages

5665-9

issue

13

eissn

0006-2960

issn

1520-4995

journal_volume

28

pub_type

杂志文章
  • Distribution and properties of the genes encoding the biosynthesis of the bacterial cofactor, pyrroloquinoline quinone.

    abstract::Pyrroloquinoline quinone (PQQ) is a small, redox active molecule that serves as a cofactor for several bacterial dehydrogenases, introducing pathways for carbon utilization that confer a growth advantage. Early studies had implicated a ribosomally translated peptide as the substrate for PQQ production. This study pres...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi201763d

    authors: Shen YQ,Bonnot F,Imsand EM,RoseFigura JM,Sjölander K,Klinman JP

    更新日期:2012-03-20 00:00:00

  • Sugar binding induced charge translocation in the melibiose permease from Escherichia coli.

    abstract::Electrogenic events associated with the activity of the melibiose permease (MelB), a transporter from Escherichia coli, were investigated. Proteoliposomes containing purified MelB were adsorbed to a solid supported lipid membrane, activated by a substrate concentration jump, and transient currents were measured. When ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0489053

    authors: Meyer-Lipp K,Ganea C,Pourcher T,Leblanc G,Fendler K

    更新日期:2004-10-05 00:00:00

  • Stabilization of a protein nanocage through the plugging of a protein-protein interfacial water pocket.

    abstract::The unique structural properties of the ferritin protein cages have provided impetus to focus on the methodical study of these self-assembling nanosystems. Among these proteins, Escherichia coli bacterioferritin (EcBfr), although architecturally very similar to other members of the family, shows structural instability...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200207w

    authors: Ardejani MS,Li NX,Orner BP

    更新日期:2011-05-17 00:00:00

  • Activation of DNA cleavage by dynemicin A in a B-Z conformational junction.

    abstract::We report here that the DNA strand scission by dynemicin A is not only sequence-specific but also conformation-specific. The salt-induced B----Z conformational transition dramatically enhanced the cleavage by dynemicin A in a B-Z junction region. By contrast, the bleomycin-Fe(II) complex, the elsamicin A-Fe(II) comple...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00144a019

    authors: Ichikawa A,Kuboya T,Aoyama T,Sugiura Y

    更新日期:1992-07-28 00:00:00

  • Diverse properties of external and internal forms of yeast invertase derived from the same gene.

    abstract::It has been shown by genetic analysis that the external and internal invertases from Saccharomyces cerevisiae share a common structural gene [Taussig, R., & Carlson, M. (1983) Nucleic Acids Res. 11, 1943-1954]. However, the only amino acid composition of these two forms of invertase reported to date has revealed exten...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00343a014

    authors: Chu FK,Takase K,Guarino D,Maley F

    更新日期:1985-10-22 00:00:00

  • Identification of Asp-130 as the catalytic nucleophile in the main alpha-galactosidase from Phanerochaete chrysosporium, a family 27 glycosyl hydrolase.

    abstract::Characterization of the complete gene sequence encoding the alpha-galactosidase from Phanerochaete chrysosporium confirms that this enzyme is a member of glycosyl hydrolase family 27 [Henrissat, B., and Bairoch, A. (1996) Biochem. J. 316, 695-696]. This family, together with the family 36 alpha-galactosidases, forms g...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0008074

    authors: Hart DO,He S,Chany CJ 2nd,Withers SG,Sims PF,Sinnott ML,Brumer H 3rd

    更新日期:2000-08-15 00:00:00

  • Temperature-induced conformational switch in intestinal fatty acid binding protein (IFABP) revealing an alternative mode for ligand binding.

    abstract::IFABP is a small beta-barrel protein with a short helix-turn-helix motif near the N-terminus that is thought to participate in the regulation of the uptake and delivery of fatty acids. In a previous work, we detected by near UV circular dichroism a reversible conformational transition of this protein occurring between...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi020680d

    authors: Arighi CN,Rossi JP,Delfino JM

    更新日期:2003-06-24 00:00:00

  • Human and murine cytotoxic T lymphocyte serine proteases: subsite mapping with peptide thioester substrates and inhibition of enzyme activity and cytolysis by isocoumarins.

    abstract::The active site structures of human Q31 granzyme A, murine granzymes (A, B, C, D, E, and F), and human granzymes (A, B, and 3) isolated from cytotoxic T lymphocytes (CTL) were studied with peptide thioester substrates, peptide chloromethyl ketone, and isocoumarin inhibitors. Human Q31, murine, and human granzyme A hyd...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00222a027

    authors: Odake S,Kam CM,Narasimhan L,Poe M,Blake JT,Krahenbuhl O,Tschopp J,Powers JC

    更新日期:1991-02-26 00:00:00

  • Circadian genomics reveal a role for post-transcriptional regulation in mammals.

    abstract::To maintain daily cycles, the circadian clock must tightly regulate the rhythms of thousands of mRNAs and proteins with the correct period, phase, and amplitude to ultimately drive the wide range of rhythmic biological processes. Recent genomic approaches have revolutionized our view of circadian gene expression and h...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi500707c

    authors: Kojima S,Green CB

    更新日期:2015-01-20 00:00:00

  • Denaturation of cytochrome P450 2B1 by guanidine hydrochloride and urea: evidence for a metastable intermediate state of the active site.

    abstract::A metastable intermediate was found in the course of the denaturation of purified cytochrome P450 2B1 by increasing concentrations of guanidine hydrochloride (GuHCl). The metastable intermediate has no or low absorbance at 450 nm in the reduced carbon monoxide difference spectrum and has no absorbance at 420 nm. The i...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00016a023

    authors: Yu XC,Shen S,Strobel HW

    更新日期:1995-04-25 00:00:00

  • Two clusters of charged residues located in the electropositive face of the von Willebrand factor A1 domain are essential for heparin binding.

    abstract::The VWF A1 domain seems to possess two heparin binding regions (residues 565-587 and 633-648) displaying positively charged amino acids, but the overall polyanion-A1 domain interaction scheme remains essentially elusive. To probe this molecular reaction as well as the role of electrostatic forces in VWF-heparin intera...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi020044f

    authors: Rastegar-Lari G,Villoutreix BO,Ribba AS,Legendre P,Meyer D,Baruch D

    更新日期:2002-05-28 00:00:00

  • Stimulation of iron(II) bleomycin activity by phosphate-containing compounds.

    abstract::Orthophosphate and phosphate derivatives including pyrophosphate, hexametaphosphate, ATP, ADP, and inositol hexaphosphate enhance the extent of DNA degradation by iron(II) bleomycin. These phosphate-containing compounds increase both the release of free nucleic base and that of base propenals which are DNA cleavage pr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00335a034

    authors: Burger RM,Horwitz SB,Peisach J

    更新日期:1985-07-02 00:00:00

  • Transfer of band 3, the erythrocyte anion transporter, between phospholipid vesicles and cells.

    abstract::Band 3, the anion transport protein of human erythrocyte membranes, can be transferred from cells to liposomes and from liposomes back to cell membranes, retaining function and native orientation. After incubation with cells, sonicated phosphatidylcholine vesicles bind a transmembrane protein that comigrates with band...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00295a011

    authors: Newton AC,Cook SL,Huestis WH

    更新日期:1983-12-20 00:00:00

  • Ionic-strength-dependent effects in protein folding: analysis of rate equilibrium free-energy relationships and their interpretation.

    abstract::The traditional approach to studying protein folding involves applying a perturbation, usually denaturant or mutation, and determining the effect upon the free energy of folding, DeltaG0, and the activation free energy, DeltaG(not equal). Data collected as a function of the perturbation can be used to construct rate e...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701645g

    authors: Song B,Cho JH,Raleigh DP

    更新日期:2007-12-11 00:00:00

  • A circularly permuted photoactive yellow protein as a scaffold for photoswitch design.

    abstract::Upon blue light irradiation, photoactive yellow protein (PYP) undergoes a conformational change that involves large movements at the N-terminus of the protein. We reasoned that this conformational change might be used to control other protein or peptide sequences if these were introduced as linkers connecting the N- a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi400018h

    authors: Kumar A,Burns DC,Al-Abdul-Wahid MS,Woolley GA

    更新日期:2013-05-14 00:00:00

  • Thermodynamic consequences of bipartite immunity protein binding to the ribosomal ribonuclease colicin E3.

    abstract::Colicin E3 is a 60 kDa, multidomain protein antibiotic that targets its ribonuclease activity to an essential region of the 16S ribosomal RNA of Escherichia coli. To prevent suicide of the producing cell, synthesis of the toxin is accompanied by the production of a 10 kDa immunity protein (Im3) that binds strongly to ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0273720

    authors: Walker D,Moore GR,James R,Kleanthous C

    更新日期:2003-04-15 00:00:00

  • Inversion of receptor binding preferences by mutagenesis: free energy thermodynamic integration studies on sugar binding to L-arabinose binding proteins.

    abstract::The Escherichia coli L-arabinose-binding protein (ABP) participates as a specific receptor in the transport of L-arabinose, D-fucose, and D-galactose through the periplasmic space. The wild-type protein binds L-arabinose about 40 times more strongly than D-fucose. A mutation of the protein at position 108 (Met-->Leu) ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00080a013

    authors: Zacharias M,Straatsma TP,McCammon JA,Quiocho FA

    更新日期:1993-07-27 00:00:00

  • The sucrose permease of Escherichia coli: functional significance of cysteine residues and properties of a cysteine-less transporter.

    abstract::The sucrose (CscB) permease belongs to the oligosaccharide:H(+) symporter family of the Major Facilitator Superfamily and is homologous to the lactose permease from Escherichia coli. Sucrose transport in cells expressing sucrose permease is completely inhibited by N-ethylmaleimide (NEM), suggesting that one or more of...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi000124o

    authors: Sahin-Tóth M,Frillingos S,Lawrence MC,Kaback HR

    更新日期:2000-05-23 00:00:00

  • Threonine inhibition of the aspartokinase--homoserine dehydrogenase I of Escherichia coli. Threonine binding studies.

    abstract::Both activities of the aspartokinase--homoserine I (AK-HSD) of Escherichia coli are inhibited by threonine. Careful threonine binding studies have now been done which have allowed us to distinguish the various effects of threonine on the enzyme. The ultrafiltration technique of H. Paulus ((1969) Anal. Biochem. 32, 101...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00610a014

    authors: Bearer CF,Neet KE

    更新日期:1978-08-22 00:00:00

  • Expression, purification, and crystal structure determination of recombinant human epidermal-type fatty acid binding protein.

    abstract::We describe the crystal structure of human epidermal-type fatty acid binding protein (E-FABP) that was recently found to be highly upregulated in human psoriatic keratinocytes. To characterize E-FABP with respect to ligand-binding properties and tertiary structure, we cloned the respective cDNA, overexpressed the prot...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990305u

    authors: Hohoff C,Börchers T,Rüstow B,Spener F,van Tilbeurgh H

    更新日期:1999-09-21 00:00:00

  • Water-soluble beta-sheet models which self-assemble into fibrillar structures.

    abstract::Self-assembly of beta-sheet domains resulting in the formation of pathogenic, fibrillar protein aggregates (amyloids) is a characteristic feature of various medical disorders. These include neurodegenerative diseases, such as Alzheimer's, Huntington's, and Creutzfeldt-Jacob's. A significant problem in studying such ag...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990510+

    authors: Janek K,Behlke J,Zipper J,Fabian H,Georgalis Y,Beyermann M,Bienert M,Krause E

    更新日期:1999-06-29 00:00:00

  • High affinity of the cell-penetrating peptide HIV-1 Tat-PTD for DNA.

    abstract::During cellular uptake of fluorescently labeled cell-penetrating peptides (CPPs), intense fluorescent signals are commonly observed in the nucleus of the cell, suggesting intracellular CPP relocation and potential binding to the genome of the host. We therefore investigated the interaction of the CPP HIV-1 Tat(47-57) ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi700416h

    authors: Ziegler A,Seelig J

    更新日期:2007-07-10 00:00:00

  • Primary charge separation in photosystem I: a two-step electrogenic charge separation connected with P700+A0- and P700+A1- formation.

    abstract::A PS I membrane preparation from a PS II deficient mutant of Synechocystis sp. PCC 6803 (psb DI/DII/C) was investigated by picosecond photovoltage and fluorescence measurements. The photovoltage kinetics show two distinct phases. At low excitation energies the fast phase correlates with the fluorescence decay time con...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00195a001

    authors: Hecks B,Wulf K,Breton J,Leibl W,Trissl HW

    更新日期:1994-07-26 00:00:00

  • Role of metals in the reaction catalyzed by protein farnesyltransferase.

    abstract::Protein farnesyltransferase catalyzes the posttranslational farnesylation of several proteins involved in signal transduction, including Ras, and is a target enzyme for antitumor therapies. Efficient product formation catalyzed by protein farnesyltransferase requires an enzyme-bound zinc cation and high concentrations...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0011781

    authors: Saderholm MJ,Hightower KE,Fierke CA

    更新日期:2000-10-10 00:00:00

  • Cytochrome P-450 inactivation: structure of the prosthetic heme adduct with propyne.

    abstract::Hepatic microsomal cytochrome P-450 from phenobarbital-pretreated rats is destroyed by propyne in a reduced nicotinamide adenine dinucleotide dependent process which also results in vivo in the accumulation of an abnormal green porphyrin. The green porphyrin has been identified by its electronic absorption, mass spect...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00528a033

    authors: Ortiz de Montellano PR,Kunze KL

    更新日期:1981-12-08 00:00:00

  • Cloning of a complementary deoxyribonucleic acid encoding a portion of rat intestinal preapolipoprotein AIV messenger ribonucleic acid.

    abstract::Apolipoprotein AIV is one of the principal apolipoproteins synthesized by the rat small intestine. We have cloned a cDNA encoding a portion of preapolipoprotein AIV mRNA. A kinetically fractionated cDNA probe highly enriched for the abundant intestinal mucosal mRNA sequences was used to screen a library of recombinant...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00265a007

    authors: Gordon JI,Smith DP,Alpers DH,Strauss AW

    更新日期:1982-10-26 00:00:00

  • Post-Translational Modifications in Polypyrimidine Tract Binding Proteins PTBP1 and PTBP2.

    abstract::RNA binding proteins play an important role in regulating alternative pre-mRNA splicing and in turn cellular gene expression. Many of these RNA binding proteins occur as gene families with members sharing a high degree of primary structure identity and domain organization yet have tissue-specific expression patterns a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00256

    authors: Pina JM,Reynaga JM,Truong AAM,Keppetipola NM

    更新日期:2018-07-03 00:00:00

  • Preparation and Application of 13C-Labeled myo-Inositol to Identify New Catabolic Products in Inositol Metabolism in Lactobacillus casei.

    abstract::myo-Inositol (mI) is widely distributed in all domains of life and is important for several cellular functions, including bacterial survival. The enzymes responsible for the bacterial catabolism of mI, encoded in the iol operon, can vary from one organism to another, and these pathways have yet to be fully characteriz...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00539

    authors: Ramos-Figueroa JS,Aamudalapalli HB,Jagdhane RC,Smith J,Palmer DRJ

    更新日期:2020-08-18 00:00:00

  • Thermodynamic characterization of ligand-induced conformational changes in UDP-N-acetylglucosamine enolpyruvyl transferase.

    abstract::The binding of UDP-N-acetylglucosamine (UDPNAG) to the enzyme UDP-N-acetylglucosamine enolpyruvyl transferase (MurA) was studied in the absence and presence of the antibiotic fosfomycin by isothermal titration calorimetry. Fosfomycin binds covalently to MurA in the presence of UDPNAG and also in its absence as demonst...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0107041

    authors: Samland AK,Jelesarov I,Kuhn R,Amrhein N,Macheroux P

    更新日期:2001-08-21 00:00:00

  • Inhibition of pyruvate dehydrogenase multienzyme complex from Escherichia coli with a bifunctional arsenoxide: selective inactivation of lipoamide dehydrogenase.

    abstract::The bifunctional reagent p-[(bromoacetyl)-amino]phenyl arsenoxide (BrCH2CONHPhAsO) in the presence of excess reduced nicotinamide adenine dinucleotide has been shown to cause the irreversible active site directed inactivation of the lipoamide dehydrogenase (E3) component of the pyruvate dehydrogenase multienzyme (PD) ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00515a018

    authors: Adamson SR,Stevenson KJ

    更新日期:1981-06-09 00:00:00