Regulation of DNA Translocation Efficiency within the Chromatin Remodeler RSC/Sth1 Potentiates Nucleosome Sliding and Ejection.

Abstract:

:The RSC chromatin remodeler slides and ejects nucleosomes, utilizing a catalytic subunit (Sth1) with DNA translocation activity, which can pump DNA around the nucleosome. A central question is whether and how DNA translocation is regulated to achieve sliding versus ejection. Here, we report the regulation of DNA translocation efficiency by two domains residing on Sth1 (Post-HSA and Protrusion 1) and by actin-related proteins (ARPs) that bind Sth1. ARPs facilitated sliding and ejection by improving "coupling"-the amount of DNA translocation by Sth1 relative to ATP hydrolysis. We also identified and characterized Protrusion 1 mutations that promote "coupling," and Post-HSA mutations that improve ATP hydrolysis; notably, the strongest mutations conferred efficient nucleosome ejection without ARPs. Taken together, sliding-to-ejection involves a continuum of DNA translocation efficiency, consistent with higher magnitudes of ATPase and coupling activities (involving ARPs and Sth1 domains), enabling the simultaneous rupture of multiple histone-DNA contacts facilitating ejection.

journal_name

Mol Cell

journal_title

Molecular cell

authors

Clapier CR,Kasten MM,Parnell TJ,Viswanathan R,Szerlong H,Sirinakis G,Zhang Y,Cairns BR

doi

10.1016/j.molcel.2016.03.032

subject

Has Abstract

pub_date

2016-05-05 00:00:00

pages

453-461

issue

3

eissn

1097-2765

issn

1097-4164

pii

S1097-2765(16)30015-6

journal_volume

62

pub_type

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