Automatic segmentation of stereoelectroencephalography (SEEG) electrodes post-implantation considering bending.

Abstract:

PURPOSE:The accurate and automatic localisation of SEEG electrodes is crucial for determining the location of epileptic seizure onset. We propose an algorithm for the automatic segmentation of electrode bolts and contacts that accounts for electrode bending in relation to regional brain anatomy. METHODS:Co-registered post-implantation CT, pre-implantation MRI, and brain parcellation images are used to create regions of interest to automatically segment bolts and contacts. Contact search strategy is based on the direction of the bolt with distance and angle constraints, in addition to post-processing steps that assign remaining contacts and predict contact position. We measured the accuracy of contact position, bolt angle, and anatomical region at the tip of the electrode in 23 post-SEEG cases comprising two different surgical approaches when placing a guiding stylet close to and far from target point. Local and global bending are computed when modelling electrodes as elastic rods. RESULTS:Our approach executed on average in 36.17 s with a sensitivity of 98.81% and a positive predictive value (PPV) of 95.01%. Compared to manual segmentation, the position of contacts had a mean absolute error of 0.38 mm and the mean bolt angle difference of [Formula: see text] resulted in a mean displacement error of 0.68 mm at the tip of the electrode. Anatomical regions at the tip of the electrode were in strong concordance with those selected manually by neurosurgeons, [Formula: see text], with average distance between regions of 0.82 mm when in disagreement. Our approach performed equally in two surgical approaches regardless of the amount of electrode bending. CONCLUSION:We present a method robust to electrode bending that can accurately segment contact positions and bolt orientation. The techniques presented in this paper will allow further characterisation of bending within different brain regions.

authors

Granados A,Vakharia V,Rodionov R,Schweiger M,Vos SB,O'Keeffe AG,Li K,Wu C,Miserocchi A,McEvoy AW,Clarkson MJ,Duncan JS,Sparks R,Ourselin S

doi

10.1007/s11548-018-1740-8

subject

Has Abstract

pub_date

2018-06-01 00:00:00

pages

935-946

issue

6

eissn

1861-6410

issn

1861-6429

pii

10.1007/s11548-018-1740-8

journal_volume

13

pub_type

杂志文章
  • PyDBS: an automated image processing workflow for deep brain stimulation surgery.

    abstract:PURPOSE:Deep brain stimulation (DBS) is a surgical procedure for treating motor-related neurological disorders. DBS clinical efficacy hinges on precise surgical planning and accurate electrode placement, which in turn call upon several image processing and visualization tasks, such as image registration, image segmenta...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-014-1007-y

    authors: D'Albis T,Haegelen C,Essert C,Fernández-Vidal S,Lalys F,Jannin P

    更新日期:2015-02-01 00:00:00

  • XDose: toward online cross-validation of experimental and computational X-ray dose estimation.

    abstract:PURPOSE:As the spectrum of X-ray procedures has increased both for diagnostic and for interventional cases, more attention is paid to X-ray dose management. While the medical benefit to the patient outweighs the risk of radiation injuries in almost all cases, reproducible studies on organ dose values help to plan preve...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-020-02298-6

    authors: Roser P,Birkhold A,Preuhs A,Ochs P,Stepina E,Strobel N,Kowarschik M,Fahrig R,Maier A

    更新日期:2021-01-01 00:00:00

  • On-patient see-through augmented reality based on visual SLAM.

    abstract:PURPOSE:An augmented reality system to visualize a 3D preoperative anatomical model on intra-operative patient is proposed. The hardware requirement is commercial tablet-PC equipped with a camera. Thus, no external tracking device nor artificial landmarks on the patient are required. METHODS:We resort to visual SLAM t...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-016-1444-x

    authors: Mahmoud N,Grasa ÓG,Nicolau SA,Doignon C,Soler L,Marescaux J,Montiel JM

    更新日期:2017-01-01 00:00:00

  • Evaluation of a marker-less, intra-operative, augmented reality guidance system for robot-assisted laparoscopic radical prostatectomy.

    abstract:PURPOSE:Robot-assisted laparoscopic radical prostatectomy (RALRP) using the da Vinci surgical robot is a common treatment for organ-confined prostate cancer. Augmented reality (AR) can help during RALRP by showing the surgeon the location of anatomical structures and tumors from preoperative imaging. Previously, we pro...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-020-02181-4

    authors: Kalia M,Mathur P,Tsang K,Black P,Navab N,Salcudean S

    更新日期:2020-07-01 00:00:00

  • GRAPE: a graphical pipeline environment for image analysis in adaptive magnetic resonance imaging.

    abstract:PURPOSE:We present a platform, GRAphical Pipeline Environment (GRAPE), to facilitate the development of patient-adaptive magnetic resonance imaging (MRI) protocols. METHODS:GRAPE is an open-source project implemented in the Qt C++ framework to enable graphical creation, execution, and debugging of real-time image anal...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-016-1495-z

    authors: Gabr RE,Tefera GB,Allen WJ,Pednekar AS,Narayana PA

    更新日期:2017-03-01 00:00:00

  • A framework for correcting brain retraction based on an eXtended Finite Element Method using a laser range scanner.

    abstract:BACKGROUND:Brain retraction causes great distortion that limits the accuracy of an image-guided neurosurgery system that uses preoperative images. Therefore, brain retraction correction is an important intraoperative clinical application. METHODS:We used a linear elastic biomechanical model, which deforms based on the...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-013-0958-8

    authors: Li P,Wang W,Song Z,An Y,Zhang C

    更新日期:2014-07-01 00:00:00

  • Four-dimensional fully convolutional residual network-based liver segmentation in Gd-EOB-DTPA-enhanced MRI.

    abstract:PURPOSE:Gadolinium-ethoxybenzyl-diethylenetriamine pentaacetic acid (Gd-EOB-DTPA)-enhanced magnetic resonance imaging (MRI) tends to show higher diagnostic accuracy than other modalities. There is a demand for computer-assisted detection (CAD) software for Gd-EOB-DTPA-enhanced MRI. Segmentation with high accuracy is im...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-019-01935-z

    authors: Takenaga T,Hanaoka S,Nomura Y,Nemoto M,Murata M,Nakao T,Miki S,Yoshikawa T,Hayashi N,Abe O

    更新日期:2019-08-01 00:00:00

  • Dynamic contrast-enhanced computed tomography diagnosis of primary liver cancers using transfer learning of pretrained convolutional neural networks: Is registration of multiphasic images necessary?

    abstract:PURPOSE:To evaluate the effect of image registration on the diagnostic performance of transfer learning (TL) using pretrained convolutional neural networks (CNNs) and three-phasic dynamic contrast-enhanced computed tomography (DCE-CT) for primary liver cancers. METHODS:We retrospectively evaluated 215 consecutive pati...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-019-01987-1

    authors: Yamada A,Oyama K,Fujita S,Yoshizawa E,Ichinohe F,Komatsu D,Fujinaga Y

    更新日期:2019-08-01 00:00:00

  • MRI-compatible positioning device for guiding a focused ultrasound system for transrectal treatment of prostate cancer.

    abstract:BACKGROUND:High-intensity focused ultrasound (HIFU) is a promising treatment method for many common cancers, including prostate cancer. Magnetic resonance image (MRI) guidance of HIFU permits targeting and monitoring of therapy. A prototype MRI-compatible positioning device that navigates a HIFU transducer was designed...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-013-0964-x

    authors: Yiallouras C,Mylonas N,Damianou C

    更新日期:2014-07-01 00:00:00

  • A method for going from 2D laparoscope to 3D acquisition of surface landmarks by a novel computer vision approach.

    abstract:PURPOSE:This paper presents a method to use the Smart Trocars-our new surgical instrument recognition system-or any accurate localization system of surgical instrument for acquiring intraoperative surface data. Complex laparoscopic surgeries need a proper guidance system which requires registering the preoperative data...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-017-1655-9

    authors: Garbey M,Nguyen TB,Huang AY,Fikfak V,Dunkin BJ

    更新日期:2018-02-01 00:00:00

  • Scaled, patient-specific 3D vertebral model reconstruction based on 2D lateral fluoroscopy.

    abstract:BACKGROUNDS:Accurate three-dimensional (3D) models of lumbar vertebrae are required for image-based 3D kinematics analysis. MRI or CT datasets are frequently used to derive 3D models but have the disadvantages that they are expensive, time-consuming or involving ionizing radiation (e.g., CT acquisition). An alternative...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-010-0515-7

    authors: Zheng G,Nolte LP,Ferguson SJ

    更新日期:2011-05-01 00:00:00

  • Augmentation of haptic feedback for teleoperated robotic surgery.

    abstract:PURPOSE:A frequently mentioned lack of teleoperated surgical robots is the lack of haptic feedback. Haptics are not only able to mirror force information from the situs, but also to provide spatial guidance according to a surgical plan. However, superposition of the two haptic information can lead to overlapping and ma...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-020-02118-x

    authors: Schleer P,Kaiser P,Drobinsky S,Radermacher K

    更新日期:2020-03-01 00:00:00

  • A pre-operative planning framework for global registration of laparoscopic ultrasound to CT images.

    abstract:PURPOSE:Laparoscopic ultrasound (LUS) enhances the safety of laparoscopic liver resection by enabling real-time imaging of internal structures such as vessels. However, LUS probes can be difficult to use, and many tumours are iso-echoic and hence are not visible. Registration of LUS to a pre-operative CT or MR scan has...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-018-1799-2

    authors: Ramalhinho J,Robu MR,Thompson S,Gurusamy K,Davidson B,Hawkes D,Barratt D,Clarkson MJ

    更新日期:2018-08-01 00:00:00

  • Hybrid simulation using mixed reality for interventional ultrasound imaging training.

    abstract:PURPOSE:Ultrasound (US) imaging offers advantages over other imaging modalities and has become the most widespread modality for many diagnostic and interventional procedures. However, traditional 2D US requires a long training period, especially to learn how to manipulate the probe. A hybrid interactive system based on...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-014-1113-x

    authors: Freschi C,Parrini S,Dinelli N,Ferrari M,Ferrari V

    更新日期:2015-07-01 00:00:00

  • Incorporating prior shape knowledge via data-driven loss model to improve 3D liver segmentation in deep CNNs.

    abstract:PURPOSE:Convolutional neural networks (CNNs) have obtained enormous success in liver segmentation. However, there are several challenges, including low-contrast images, and large variations in the shape, and appearance of the liver. Incorporating prior knowledge in deep CNN models improves their performance and general...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-019-02085-y

    authors: Mohagheghi S,Foruzan AH

    更新日期:2020-02-01 00:00:00

  • Real-time marker-free patient registration for electromagnetic navigated bronchoscopy: a phantom study.

    abstract:PURPOSE:To perform bronchoscopy safely and smoothly, it is very important to develop a bronchoscopic guidance system. Transbronchial lung biopsy (TBLB) with a bronchoscopic guidance system especially should permit safe image-guided procedures. Recently, electromagnetic tracking (EMT) is utilized to track the tip of the...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-011-0626-9

    authors: Deguchi D,Feuerstein M,Kitasaka T,Suenaga Y,Ide I,Murase H,Imaizumi K,Hasegawa Y,Mori K

    更新日期:2012-05-01 00:00:00

  • Planning of mandibular reconstructions based on statistical shape models.

    abstract:PURPOSE:The reconstruction of large continuity defects of the mandible is a challenging task, especially when the shape of the missing part is not known prior to operation. Today, the surgical planning is based mainly on visual judgment and the individual skills and experience of the surgeons. The objective of the curr...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-016-1451-y

    authors: Raith S,Wolff S,Steiner T,Modabber A,Weber M,Hölzle F,Fischer H

    更新日期:2017-01-01 00:00:00

  • A computer analysis method for correlating knee X-rays with continuous indicators.

    abstract:PURPOSE:To develop an image analysis method that can automatically find correlations between a set of plain radiographs and continuous clinical or physiological indicators. METHODS:Knee X-rays taken from the Baltimore Longitudinal Study of Aging are used in this study. The computer analysis method is based on the WND-...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-011-0550-z

    authors: Shamir L

    更新日期:2011-09-01 00:00:00

  • Shared control of a medical robot with haptic guidance.

    abstract:PURPOSE:Tele-operation of robotic surgery reduces the radiation exposure during the interventional radiological operations. However, endoscope vision without force feedback on the surgical tool increases the difficulty for precise manipulation and the risk of tissue damage. The shared control of vision and force provid...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-016-1425-0

    authors: Xiong L,Chng CB,Chui CK,Yu P,Li Y

    更新日期:2017-01-01 00:00:00

  • Translatory hip kinematics measured with optoelectronic surgical navigation.

    abstract:PURPOSE:An optoelectronic surgical navigation system was used to detect small but measurable translational motion of human hip cadavers in high-range passive motions. Kinematic data were also examined to demonstrate the role of soft tissues in constraining hip translation. METHODS:Twelve cadaver hips were scanned usin...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-017-1629-y

    authors: Zakani S,Rudan JF,Ellis RE

    更新日期:2017-08-01 00:00:00

  • Segmentation-based registration of ultrasound volumes for glioma resection in image-guided neurosurgery.

    abstract:PURPOSE:In image-guided surgery for glioma removal, neurosurgeons usually plan the resection on images acquired before surgery and use them for guidance during the subsequent intervention. However, after the surgical procedure has begun, the preplanning images become unreliable due to the brain shift phenomenon, caused...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-019-02045-6

    authors: Canalini L,Klein J,Miller D,Kikinis R

    更新日期:2019-10-01 00:00:00

  • Generative multi-adversarial network for striking the right balance in abdominal image segmentation.

    abstract::Purpose The identification of abnormalities that are relatively rare within otherwise normal anatomy is a major challenge for deep learning in the semantic segmentation of medical images. The small number of samples of the minority classes in the training data makes the learning of optimal classification challenging, ...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-020-02254-4

    authors: Rezaei M,Näppi JJ,Lippert C,Meinel C,Yoshida H

    更新日期:2020-11-01 00:00:00

  • Automated brain tumour detection and segmentation using superpixel-based extremely randomized trees in FLAIR MRI.

    abstract:PURPOSE:We propose a fully automated method for detection and segmentation of the abnormal tissue associated with brain tumour (tumour core and oedema) from Fluid- Attenuated Inversion Recovery (FLAIR) Magnetic Resonance Imaging (MRI). METHODS:The method is based on superpixel technique and classification of each supe...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-016-1483-3

    authors: Soltaninejad M,Yang G,Lambrou T,Allinson N,Jones TL,Barrick TR,Howe FA,Ye X

    更新日期:2017-02-01 00:00:00

  • Development and evaluation of a prototype detector for an intraoperative laparoscopic coincidence imaging system with PET tracers.

    abstract:PURPOSE:Conventional positron emission tomography can be used only preoperatively to identify lymph node metastases, and hence, these growths are difficult to locate intraoperatively. Previously, an intraoperative laparoscopic coincidence imaging system, with an external fixed detector array and a detector probe that c...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-020-02282-0

    authors: Liyanaarachchi MR,Shimazoe K,Takahashi H,Nakagawa K,Kobayashi E,Sakuma I

    更新日期:2021-01-01 00:00:00

  • Interactive navigation of segmented MR angiograms using simultaneous curved planar and volume visualizations.

    abstract:PURPOSE:Interactive visualization is required to inspect and monitor the automatic segmentation of vessels derived from contrast-enhanced magnetic resonance angiography (CE-MRA). A dual-view visualization scheme consisting of curved planar reformation (CPR) and direct volume rendering (DVR) was developed for this purpo...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-010-0534-4

    authors: van Schooten BW,van Dijk EM,Suinesiaputra A,Reiber JH

    更新日期:2011-09-01 00:00:00

  • A technique for semiautomatic segmentation of echogenic structures in 3D ultrasound, applied to infant hip dysplasia.

    abstract:PURPOSE:Automatic segmentation of anatomical structures and lesions from medical ultrasound images is a formidable challenge in medical imaging due to image noise, blur and artifacts. In this paper we present a segmentation technique with features highly suited to use in noisy 3D ultrasound volumes and demonstrate its ...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-015-1239-5

    authors: Hareendranathan AR,Mabee M,Punithakumar K,Noga M,Jaremko JL

    更新日期:2016-01-01 00:00:00

  • Planning nonlinear access paths for temporal bone surgery.

    abstract:PURPOSE:Interventions at the otobasis operate in the narrow region of the temporal bone where several highly sensitive organs define obstacles with minimal clearance for surgical instruments. Nonlinear trajectories for potential minimally invasive interventions can provide larger distances to risk structures and optimi...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-018-1712-z

    authors: Fauser J,Sakas G,Mukhopadhyay A

    更新日期:2018-05-01 00:00:00

  • Cost-effective, personalized, 3D-printed liver model for preoperative planning before laparoscopic liver hemihepatectomy for colorectal cancer metastases.

    abstract:PURPOSE:Three-dimensional (3D) printing for preoperative planning has been intensively developed in the recent years. However, the implementation of these solutions in hospitals is still difficult due to high costs, extremely expensive industrial-grade printers, and software that is difficult to obtain and learn along ...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-017-1527-3

    authors: Witowski JS,Pędziwiatr M,Major P,Budzyński A

    更新日期:2017-12-01 00:00:00

  • Long-term experience with setup and implementation of an IHE-based image management and distribution system in intersectoral clinical routine.

    abstract:PURPOSE:Sharing of medical data is crucial for the proper treatment of patients as it could reduce the risk of duplicated medical tests and speed up the care process if all documents are readily available. Despite great technical progress, sharing patient data while maintaining full control over the process in an inter...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-018-1819-2

    authors: Schwind F,Münch H,Schröter A,Brandner R,Kutscha U,Brandner A,Heinze O,Bergh B,Engelmann U

    更新日期:2018-11-01 00:00:00

  • MITK-US: real-time ultrasound support within MITK.

    abstract:PURPOSE:Intra-procedural acquisition of the patient anatomy is a key technique in the context of computer-assisted interventions (CAI). Ultrasound (US) offers major advantages as an interventional imaging modality because it is real time and low cost and does not expose the patient or physician to harmful radiation. To...

    journal_title:International journal of computer assisted radiology and surgery

    pub_type: 杂志文章

    doi:10.1007/s11548-013-0962-z

    authors: März K,Franz AM,Seitel A,Winterstein A,Bendl R,Zelzer S,Nolden M,Meinzer HP,Maier-Hein L

    更新日期:2014-05-01 00:00:00