Visualization of Functional Structure and Kinetic Dynamics of Cellulases.

Abstract:

:Cellulose is the most abundant carbohydrate on earth and hydrolyzed by cellulases in nature. During catalysis, cellulase transfers protons to and from the oxygen atoms of the glycosidic bond and a water molecule. Since cellulose is an insoluble polymer, some kinds of cellulases, with high activity toward crystalline cellulose, move on the crystal surface with continuous hydrolysis of the molecular chain. In addition, binding and dissociation on/from the crystal surface are also important elementary steps of the reaction cycle. Recently, these interesting features of cellulases can be directly analyzed, due to the development of visualization techniques. In this chapter, we introduce (1) visualization of the protonation state of the catalytic residue by neutron crystallography, (2) visualization of processive movement on the crystal surface by high-speed atomic force microscopy , and (3) visualization of binding and dissociation events by single-molecule fluorescence microscopy.

journal_name

Adv Exp Med Biol

authors

Nakamura A,Iino R

doi

10.1007/978-981-13-2158-0_10

subject

Has Abstract

pub_date

2018-01-01 00:00:00

pages

201-217

eissn

0065-2598

issn

2214-8019

journal_volume

1104

pub_type

杂志文章,评审
  • Microbiota, Obesity and NAFLD.

    abstract::Non-alcoholic fatty liver disease (NAFLD) is an increasingly important cause of chronic liver disease globally. Similar to metabolic syndrome and obesity, NAFLD is associated with alternations in the gut microbiota and its related biological pathways. While the exact pathophysiology of NAFLD remains largely unknown, c...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-981-10-8684-7_9

    authors: Lau LHS,Wong SH

    更新日期:2018-01-01 00:00:00

  • Transporters Related to Stress Responses and Their Potential Application in Synechocystis sp. PCC 6803.

    abstract::Cyanobacteria are autotrophic prokaryotes that can perform oxygenic photosynthesis. The conversion of light and carbon dioxide into green fuels and chemicals has drawn considerable interest, and several dozen products have been successfully synthesized in genetically engineered cyanobacteria. However, during cultivati...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-981-13-0854-3_2

    authors: Xie Y,Chen L,Sun T,Zhang Y,Li T,Song X,Zhang W

    更新日期:2018-01-01 00:00:00

  • Pleiotropic Effects of Risk Factors in Age-Related Macular Degeneration and Seemingly Unrelated Complex Diseases.

    abstract::Age-related macular degeneration (AMD) is a complex disease with both environmental and genetic factors influencing disease risk. Genome-wide case-control association studies, candidate gene analyses, and epidemiological studies reinforced the notion that AMD is predominantly a disease of an impaired complement system...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章

    doi:10.1007/978-3-319-75402-4_30

    authors: Kiel C,Weber BHF,Grassmann F

    更新日期:2018-01-01 00:00:00

  • Klotho and βKlotho.

    abstract::Endocrine fibroblast growth factors (FGFs) have been recognized as hormones that regulate a variety of metabolic processes. FGF19 is secreted from intestine upon feeding and acts on liver to suppress bile acid synthesis. FGF21 is secreted from liver upon fasting and acts on adipose tissue to promote lipolysis and resp...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-1-4614-0887-1_2

    authors: Kuro-o M

    更新日期:2012-01-01 00:00:00

  • Transport Systems in Halophilic Fungi.

    abstract::Fungi that tolerate very high environmental NaCl concentrations are good model systems to study mechanisms that enable them to endure osmotic and salinity stress. The whole genome sequences of six such fungal species have been analysed: Hortaea werneckii, Wallemia ichthyophaga and four Aureobasidium spp.: A. pullulans...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-3-319-25304-6_13

    authors: Plemenitaš A,Konte T,Gostinčar C,Cimerman NG

    更新日期:2016-01-01 00:00:00

  • Structural Features of Broadly Neutralizing Antibodies and Rational Design of Vaccine.

    abstract::Despite sequence diversity, glycosylation, and conformational flexibility of the human immunodeficiency virus type 1 (HIV-1) envelope (Env), antibodies that neutralize diverse HIV-1 strains develop in selected HIV-1-infected individuals. The application of single B cell-based approaches has identified many broad and p...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-981-13-0484-2_4

    authors: Zhou T,Xu K

    更新日期:2018-01-01 00:00:00

  • The function of oligomerization-incompetent RDS in rods.

    abstract::The photoreceptor-specific tetraspanin glycoprotein RDS (retinal degeneration slow) is associated with many forms of inherited retinal disease. RDS shares features in common with other tetraspanin proteins, including the existence of a large intradiscal D2 loop containing several cysteines. While these cysteines are u...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章

    doi:10.1007/978-1-4419-1399-9_5

    authors: Chakraborty D,Conley SM,Fliesler SJ,Naash MI

    更新日期:2010-01-01 00:00:00

  • Molecular Characteristics of Influenza Virus Type B Lineages Circulating in Poland.

    abstract::From the time of the Hong Kong pandemic of 1968-1969, vaccines against influenza are trivalent, containing two subtypes of influenza type A: A/H1N1/ and A/H3N2/, and influenza type B. In 1980, circulation of the new Yamagata and Victoria lineages of influenza B virus was noted. Since both lineages have continued to ci...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章

    doi:10.1007/5584_2015_200

    authors: Bednarska K,Hallmann-Szelińska E,Kondratiuk K,Rabczenko D,Brydak LB

    更新日期:2016-01-01 00:00:00

  • Non-coding RNA and Cardiac Electrophysiological Disorders.

    abstract::Cardiac arrhythmias are common diseases affecting millions of people worldwide. A broad and diverse array of arrhythmias exists, ranging from harmless ones such as sinus arrhythmia to fatal disorders such as ventricular fibrillation. The underlying pathophysiology of arrhythmogenesis is complex and still not fully und...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-981-15-1671-9_18

    authors: Kleeberger JA,Tomsits PJ,Kääb S,Clauss S

    更新日期:2020-01-01 00:00:00

  • Use of Adair four-step kinetics in mathematical simulation of oxygen transport in the microcirculation.

    abstract::The Adair four-step kinetic model for the reactions of haemoglobin and oxygen recognizes five haemoglobin species, corresponding to deoxyhaemoglobin and one species for each level of oxygenation of the four haem groups. Thus, an oxygen transport problem involves a system of five simultaneous non-linear partial differe...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章

    doi:10.1007/978-1-4684-7433-6_22

    authors: Yap EW,Hellums JD

    更新日期:1987-01-01 00:00:00

  • Cardiac thromboembolism: evidence for role of platelets and value of platelet suppressant therapy.

    abstract::Thromboembolism remains a frequent and serious problem in cardiac patients. Methods to identify the thrombosis prone patient and the identification of safe and effective forms of treatment would be of great value. The accumulating evidence which indicates that abnormalities in platelet tests are often present in cardi...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-1-4757-1217-9_15

    authors: Genton E

    更新日期:1978-01-01 00:00:00

  • The cerebral microcirculation in ischemia and hypoxemia. The Arisztid G. B. Kovách Memorial Lecture.

    abstract::The cerebral capillary circulation exhibits heterogenous perfusion and undergoes characteristic changes in the distribution of RBC flow in response to systemic physiological stimuli. Hypoxemia, hypercapnia and hypotension increase the homogeneity of capillary perfusion, which is thought to preserve or enhance transcap...

    journal_title:Advances in experimental medicine and biology

    pub_type:

    doi:10.1007/978-1-4615-0075-9_32

    authors: Hudetz AG

    更新日期:2003-01-01 00:00:00

  • The Siberian hamster as a model for study of the mammalian photoperiodic mechanism.

    abstract::The Siberian hamster has been a useful model for studies of mammalian photoperiodism for a number of reasons: 1) Siberian hamsters are hardy animals that are easily maintained and bred in the laboratory. 2) The species exhibits a large number of seasonal, photoperiod-driven, pineal-dependent responses. Thus, the Siber...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/0-306-46814-x_17

    authors: Goldman BD

    更新日期:1999-01-01 00:00:00

  • Characterization of Human Pregnancy Specific Glycoprotein (PSG) Gene Copy Number Variations in Pre-eclampsia Patients.

    abstract::Pre-eclampsia is a pregnancy-specific hypertensive disorder that affects 2-8 % of pregnancies. This disorder can lead to seizure, multi-organ failure and maternal death. The best approach to prevent pre-eclampsia-associated adverse outcomes is to be able to prevent pre-eclampsia as early as possible. Unfortunately, cu...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章

    doi:10.1007/978-3-319-42044-8_12

    authors: Chang CL,Chang CY,Lee DX,Cheng PJ

    更新日期:2016-01-01 00:00:00

  • Effect of Simulated Microgravity and Lunar Gravity on Human Inspiratory Muscle Function: 'Selena-T' 2015 Study.

    abstract::As a part of the multi-disciplinary "SELENA-T"-2015 Bed Rest Study, we investigated the pattern of inspiratory muscles fatigue in 22 healthy male subjects during incremental exercise test to exhaustion before and after 21 days of hypokinesia evoked by bed rest. Hypokinesia consisted of head-down bed rest (HDBR) at a m...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章

    doi:10.1007/5584_2016_16

    authors: Segizbaeva MO,Aleksandrova NP,Donina ZA,Baranova EV,Katuntsev VP,Tarasenkov GG,Baranov VM

    更新日期:2016-01-01 00:00:00

  • Faecal Microbiota Transplantation as Emerging Treatment in European Countries.

    abstract::Clostridium difficile infection (CDI) is one of the most common healthcare-associated infections in the world and is a leading cause of morbidity and mortality in hospitalized patients.Although several antibiotics effectively treat CDI, some individuals do not respond to these drugs and may be cured by transplanting s...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-3-319-72799-8_11

    authors: Maida M,Mcilroy J,Ianiro G,Cammarota G

    更新日期:2018-01-01 00:00:00

  • Structure, assembly and function of the surface envelope (fertilization envelope) from eggs of the sea urchin, Strongylocentrotus purpuratus.

    abstract::The sea urchin fertilization envelope (FE) is formed following initial sperm-egg interaction from the egg surface vitelline envelope (VE) and the paracrystalline protein fraction (PCF), derived from cortical granules. Although mature FEs are physicochemically hardened postinsemination, a major protein fraction consist...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-1-4613-2255-9_16

    authors: Carroll EJ Jr,Acevedo-Duncan M,Justice RW,Santiago L

    更新日期:1986-01-01 00:00:00

  • In vitro interaction of coronaviruses with primate and human brain microvascular endothelial cells.

    abstract::Primary human and primate brain microvascular endothelial cells were tested for permissiveness to coronaviruses JHM and 229E. While sub-genomic viral RNAs could be detected up to 72 hours post-infection, primate cells were abortively infected and neither virus caused cytopathology. Human cells were non-permissive for ...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章

    doi:10.1007/978-1-4615-1899-0_11

    authors: Cabirac GF,Murray RS,McLaughlin LB,Skolnick DM,Hogue B,Dorovini-Zis K,Didier PJ

    更新日期:1995-01-01 00:00:00

  • Active and passive forces during ischemia and reperfusion of rat fast and slow twitch skeletal muscles.

    abstract::The present study shows for the first time, the response in active and passive forces of skeletal muscles to tourniquet ischemia. These responses were shown for both fast and slow twitch muscle types in the same rat hindlimb. Our data agrees partially with metabolic studies on ischemic skeletal muscles. The difference...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章

    doi:10.1007/978-1-4615-3362-7_40

    authors: Carvalho AJ,McKee NH

    更新日期:1992-01-01 00:00:00

  • Human Papillomaviruses and Skin Cancer.

    abstract::Human papillomaviruses (HPVs) infect squamous epithelia and can induce hyperproliferative lesions. More than 220 different HPV types have been characterized and classified into five different genera. While mucosal high-risk HPVs have a well-established causal role in anogenital carcinogenesis, the biology of cutaneous...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-3-030-46227-7_10

    authors: Smola S

    更新日期:2020-01-01 00:00:00

  • Studies on the mechanism of RNA synthesis of a murine coronavirus.

    abstract::The mechanism of viral RNA replication in mouse hepatitis virus (MHV)-infected cells was studied by oligonucleotide mapping of every mRNA. We discovered that an oligonucleotide, No. 10, was localized at the 5'-end of every mRNA, and was not colinear with the sequences of the virion genomic RNA. This result indicates t...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章

    doi:10.1007/978-1-4615-9373-7_19

    authors: Lai MM,Baric RS,Brayton PR,Stohlman SA

    更新日期:1984-01-01 00:00:00

  • Rapidly progressive glomerulonephritis (RPGN): is there still an "idiopathic" subgroup?

    abstract::In order to clarify if "idiopathic" RPGN still exists as a distinct entity we reviewed 41 patients with histological picture of diffuse crescentic GN (60% of crescents) and no clinical evidence of systemic disease. According to the presence or absence of intraglomerular necrotizing lesions we subdivided the patients i...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章

    doi:10.1007/978-1-4757-9182-2_76

    authors: Ferrario F,Tadros M,Napodano P,Giordano A,Sinico RA,Fellin G,D'Amico G

    更新日期:1993-01-01 00:00:00

  • Chitin/Chitosan-Active Enzymes Involved in Plant-Microbe Interactions.

    abstract::Plant chitinase hydrolyzing β-1,4-glycosidic linkages of chitin are major enzymes acting in plant-microbe interactions and are involved in self-defense against fungal pathogens. Chitosanases from soil bacteria are also involved in plant defense by hydrolyzing chitosan components of the fungal cell wall. The crystal st...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-981-13-7318-3_12

    authors: Fukamizo T,Shinya S

    更新日期:2019-01-01 00:00:00

  • Cell fusion and hyperactive osteoclastogenesis in multiple myeloma.

    abstract::Multiple myeloma (MM) is a hematologic malignancy whose progression may account for uncontrolled osteoclastogenesis promoted by the malignant plasma cells within the marrow microenvironment. Osteoclasts are multinucleated cells derived from the fusion of myeloid progenitors such as monocytes/macrophages, in response t...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-94-007-0782-5_5

    authors: Silvestris F,Ciavarella S,Strippoli S,Dammacco F

    更新日期:2011-01-01 00:00:00

  • Chemosensitive afferent nerves in the regulation of gastric blood flow and protection.

    abstract::The experimental use of capsaicin has made possible the discovery that chemosensitive neurons participate in the activation of endogenous mechanisms of protection in the face of pending injury to the gastric mucosa. At present, the pathophysiological potential of this neural emergency system is best reflected by the g...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:

    authors: Holzer P

    更新日期:1995-01-01 00:00:00

  • The Enigma of CRB1 and CRB1 Retinopathies.

    abstract::Mutations in the gene Crumbs homolog 1 (CRB1) are responsible for several retinopathies that are diverse in severity and phenotype. Thus, there is considerable incentive to determine how disruption of this gene causes disease. Progress on this front will aid in developing molecular diagnostics that can predict disease...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-3-030-27378-1_41

    authors: Ray TA,Cochran KJ,Kay JN

    更新日期:2019-01-01 00:00:00

  • Murine animal models to study the central role of T cells in immediate-type hypersensitivity responses.

    abstract::The development of allergic sensitization and inflammation is dependent on activation and stimulation of T cells that exhibit pro-allergic functions. A mouse model system was developed to study the role of T cells in allergic sensitization in more detail. Local sensitization of mice stimulates an allergen specific IgE...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-1-4615-5855-2_4

    authors: Herz U,Lumpp U,Daser A,Gelfand EW,Renz H

    更新日期:1996-01-01 00:00:00

  • Biological Rhythms Advance in Depressive Disorder.

    abstract::Most processes of human body, such as brain function, are regulated by biological rhythms. Disturbance of biological rhythms impairs mood, behavior, cognition, sleep, and social activity and may lead to mental disorders. Disturbed rhythms are widely observable in patients with major depressive disorders (MDD) and make...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-981-32-9271-0_6

    authors: Hong W,Zhang Q

    更新日期:2019-01-01 00:00:00

  • Fatigue in adapted systems. Overuse and underuse paradigms.

    abstract::Alterations in structural and biochemical properties of muscles that underlie physiological parameters of contractile force, speed and fatigability are described under conditions of 1) overuse: imposed electrical stimulation, natural exercise and functional overload; 2) reinnervation of denervated muscles; and 3) unde...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:

    authors: Gordon T

    更新日期:1995-01-01 00:00:00

  • Mechanisms Underlying Freezing and Desiccation Tolerance in Bryophytes.

    abstract::Bryophytes are small land plants that have many morphological and physiological features different from vascular plants. With distinct water relations of bryophytes, many bryophyte species exhibit high degrees of tolerance to freezing and desiccation. The tolerance is sustained by the constitutive repair mechanism and...

    journal_title:Advances in experimental medicine and biology

    pub_type: 杂志文章,评审

    doi:10.1007/978-981-13-1244-1_10

    authors: Takezawa D

    更新日期:2018-01-01 00:00:00