Evaluation of the WASPLab Segregation Software To Automatically Analyze Urine Cultures Using Routine Blood and MacConkey Agars.

Abstract:

:Automation of the clinical microbiology laboratory has become more prominent as laboratories face higher specimen volumes and understaffing and are becoming more consolidated. One recent advancement is the use of digital image analysis to rapidly distinguish between chromogenic growth for screening bacterial cultures. In this study, colony segregation software developed by Copan (Brescia, Italy) was evaluated to distinguish between significant growth and no growth of urine cultures plated onto standard blood and MacConkey agars. Specimens from 3 sites were processed on a WASP instrument (Copan) and incubated on the WASPLab platform (Copan), and plates were imaged at 0 and 24 hours postinoculation. Images were read by technologists following validated laboratory protocols (VLPs), and results were recorded in the laboratory information systems (LIS). Image analysis performed colony counts on the 24-hour images, and results were compared with the VLP. A total of 12,931 urine cultures were tested and analyzed with an overall sensitivity and specificity of 99.8% and 72.0%, respectively. After secondary review, 91.1% of manual-positive/automation-negative specimens were due to expert rules that reported the plate as contaminated or growing only normal flora and not due to threshold counts. Nine specimens were found to be manual-positive/automation-negative; a secondary review demonstrated that the results of 8 of these specimens were due to growth of microcolonies that were programmed to be ignored by the software and 1 were due to a colony count near the limit of significance. Overall, the image analysis software proved to be highly sensitive and can be utilized by laboratories to batch-review negative cultures to improve laboratory workflow.

journal_name

J Clin Microbiol

authors

Faron ML,Buchan BW,Relich RF,Clark J,Ledeboer NA

doi

10.1128/JCM.01683-19

subject

Has Abstract

pub_date

2020-03-25 00:00:00

issue

4

eissn

0095-1137

issn

1098-660X

pii

JCM.01683-19

journal_volume

58

pub_type

杂志文章
  • Dermatitis caused by Neosartorya hiratsukae infection in a hedgehog.

    abstract::This case report describes the fungal dermatitis caused by Neosartorya hiratsukae infection in a household hedgehog confirmed by microscopic examination of conidiophores and DNA analyses including the internal transcribed spacer region, partial beta-tubulin, and the calmodulin gene. It is the first report of a natural...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.00737-08

    authors: Han JI,Na KJ

    更新日期:2008-09-01 00:00:00

  • Extended incubation of culture plates improves recovery of Bordetella spp.

    abstract::Extended incubation of culture plates was studied to see if the recovery of Bordetella spp. from nasopharyngeal swabs could be improved. Forty-eight Bordetella isolates were recovered from 103 children (overall positive-culture rate, 46.6%) who met the clinical case definition of pertussis. Seven of 44 (16%) B. pertus...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.34.6.1563-1564.1996

    authors: Katzko G,Hofmeister M,Church D

    更新日期:1996-06-01 00:00:00

  • Comparison of methods of identifying Helicobacter hepaticus in B6C3F1 mice used in a carcinogenesis bioassay.

    abstract::In a long-term rodent bioassay evaluating the carcinogenicity of triethanolamine, there was equivocal evidence of carcinogenic activity in male B6C3F1 mice, based on a marginal increase in the number of hepatocellular adenomas and hepatoblastomas. Interpretation was complicated by the presence of Helicobacter hepaticu...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.36.5.1382-1387.1998

    authors: Fox JG,MacGregor JA,Shen Z,Li X,Lewis R,Dangler CA

    更新日期:1998-05-01 00:00:00

  • The 2010 global proficiency study of human papillomavirus genotyping in vaccinology.

    abstract::Accurate and internationally comparable human papillomavirus (HPV) DNA genotyping is essential both for evaluation of HPV vaccines and for effective monitoring and implementation of vaccination programs. The World Health Organization (WHO) HPV Laboratory Network (LabNet) regularly issues international proficiency stud...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.00840-12

    authors: Eklund C,Forslund O,Wallin KL,Zhou T,Dillner J,WHO Human Papillomavirus Laboratory Network.

    更新日期:2012-07-01 00:00:00

  • Enzyme immunoassay for detection of immunoglobulin M (IgM) and IgG antibodies to Mycoplasma pneumoniae.

    abstract::An enzyme immunoassay (EIA) for detection of immunoglobulin M (IgM) and IgG antibodies to Mycoplasma pneumoniae was developed. The EIA was evaluated on the basis of results in the M. pneumoniae complement fixation (MPCF) test and the cold agglutinin test. Serum samples from 430 patients with respiratory infections of ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.30.5.1198-1204.1992

    authors: Uldum SA,Jensen JS,Søndergård-Andersen J,Lind K

    更新日期:1992-05-01 00:00:00

  • Comparisons between direct microscopic and cultural methods for recognition of Corynebacterium vaginale in women with vaginitis.

    abstract::The frequency with which clue cells could be detected in Gram-stained vaginal smears and/or cervical Papanicolaou (Pap) smears was compared with the frequency of Corynebacterium vaginale (Haemophilus vaginalis) isolation in a group of 236 female patients, of whom 221 had vaginitis. Vaginal clue cells were found most o...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:

    authors: Smith RF,Rodgers HA,Hines PA,Ray RM

    更新日期:1977-03-01 00:00:00

  • InTray GC medium versus modified Thayer-Martin agar plates for diagnosis of gonorrhea from endocervical specimens.

    abstract::A new self-contained medium system for the cultivation of Neisseria gonorrhoeae was compared to modified Thayer-Martin medium for the diagnosis of gonorrhea from endocervical specimens. There was no difference in the ability of the two methods to support the growth of N. gonorrhoeae. ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.38.10.3825-3826.2000

    authors: Beverly A,Bailey-Griffin JR,Schwebke JR

    更新日期:2000-10-01 00:00:00

  • Qualitative plasma PCR assay (AMPLICOR CMV test) versus pp65 antigenemia assay for monitoring cytomegalovirus viremia and guiding preemptive ganciclovir therapy in allogeneic stem cell transplantation.

    abstract::The performances of a commercially available qualitative plasma PCR assay (AMPLICOR CMV test; Roche Diagnostics) and the pp65 antigenemia assay (AG) were evaluated for the monitoring of cytomegalovirus (CMV) viremia in 43 allogeneic stem cell transplant recipients. In addition, the suitabilities of both assays for tri...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.39.11.3938-3941.2001

    authors: Solano C,Muñoz I,Gutiérrez A,Farga A,Prósper F,García-Conde J,Navarro D,Gimeno C

    更新日期:2001-11-01 00:00:00

  • Characterization of a Brucella sp. strain as a marine-mammal type despite isolation from a patient with spinal osteomyelitis in New Zealand.

    abstract::Naturally acquired infection of humans with a marine mammal-associated Brucella sp. has only been reported once previously in a study describing infections of two patients from Peru. We report the isolation and characterization of a strain of Brucella from a New Zealand patient that appears most closely related to str...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.00680-06

    authors: McDonald WL,Jamaludin R,Mackereth G,Hansen M,Humphrey S,Short P,Taylor T,Swingler J,Dawson CE,Whatmore AM,Stubberfield E,Perrett LL,Simmons G

    更新日期:2006-12-01 00:00:00

  • Evaluation of the AutoSCAN-3, a device for reading microdilution trays.

    abstract::The AutoSCAN-3 (American MicroScan, Mahwah, N.J.) is an instrument capable of automated reading of commercially available microdilution trays for identification and quantitative susceptibility testing of rapidly growing bacteria. This study compared the results of visual and automated reading of microdilution trays fo...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.18.6.1292-1295.1983

    authors: DeGirolami PC,Eichelberger KA,Salfity LC,Rizzo MF

    更新日期:1983-12-01 00:00:00

  • Francisella tularensis Periprosthetic Joint Infections Diagnosed with Growth in Cultures.

    abstract::Tularemia caused by Francisella tularensis is a zoonotic infection of the Northern Hemisphere that mainly affects the skin, lymph nodes, bloodstream, and lungs. Other manifestations of tularemia are very rare, especially those with musculoskeletal involvement. Presenting in 2016, we diagnosed two cases of periprosthet...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章,评审

    doi:10.1128/JCM.00339-19

    authors: Chrdle A,Trnka T,Musil D,Fucentese SF,Bode P,Keller PM,Achermann Y

    更新日期:2019-07-26 00:00:00

  • Immunofluorescence of yeast in urine.

    abstract::A study of immunofluorescence of yeast in the urine was carried out in 18 patients with funguria in an effort to correlate gamma globulin coating with evidence of tissue invasion or as an indicator for institution of therapy. Positive immunofluorescence of yeast in urine is common but is neither indicative of upper ur...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:

    authors: Everett ED,Eickhoff TC,Ehret JM

    更新日期:1976-08-01 00:00:00

  • Evaluation of Correlation between Pretest Probability for Clostridium difficile Infection and Clostridium difficile Enzyme Immunoassay Results.

    abstract::The objective of this study was to evaluate the clinical characteristics and outcomes of hospitalized patients tested for Clostridium difficile and determine the correlation between pretest probability for C. difficile infection (CDI) and assay results. Patients with testing ordered for C. difficile were enrolled and ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.02126-16

    authors: Kwon JH,Reske KA,Hink T,Burnham CA,Dubberke ER

    更新日期:2017-02-01 00:00:00

  • Circulation of a novel pattern of infections by enteric adenovirus serotype 41 among children below 5 years of age in Kolkata, India.

    abstract::Human adenovirus of strains subgenus F (AdV F) are the most common strains detected in acute gastroenteritis cases in developing countries. Subgenus F is represented by AdV serotype 40 (AdV-40) and AdV-41. Most of the reports have described the predominance of AdV-41 in acute gastroenteritis cases. To gain insight int...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.01834-10

    authors: Dey RS,Ghosh S,Chawla-Sarkar M,Panchalingam S,Nataro JP,Sur D,Manna B,Ramamurthy T

    更新日期:2011-02-01 00:00:00

  • Detection of Group B Streptococcus Directly from Collected ESwab Samples by Use of the BD Max GBS Assay.

    abstract::Group B Streptococcus detection directly from Copan ESwab collected samples, using the BD Max GBS assay, was evaluated on receipt in the laboratory and after 24 h at room temperature. Results were compared to those using Lim broth enrichment PCR and culture. No significant difference was observed between 24 h ESwab an...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.00445-16

    authors: Silbert S,Rocchetti TT,Gostnell A,Kubasek C,Widen R

    更新日期:2016-06-01 00:00:00

  • Comparison of rapid identification assays for Staphylococcus aureus.

    abstract::A total of 137 strains of Staphylococcus species were blindly tested by four rapid serological assays, and the results were compared with those of the tube coagulase assay. For the S. aureus isolates, the Sero-STAT Staph assay gave six false-negative results, four of which were for methicillin-resistant strains. The A...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.19.5.703-704.1984

    authors: Aldridge KE,Kogos C,Sanders CV,Marier RL

    更新日期:1984-05-01 00:00:00

  • Nested PCR for rapid detection of mumps virus in cerebrospinal fluid from patients with neurological diseases.

    abstract::In this study, we have developed a reverse transcription (RT)-nested polymerase chain reaction (n-PCR) for the detection of mumps virus RNA in cerebrospinal fluid (CSF) from patients with neurological infections. A specific 112-bp fragment was amplified by this method with primers from the nucleoprotein of the mumps v...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:

    authors: Poggio GP,Rodriguez C,Cisterna D,Freire MC,Cello J

    更新日期:2000-01-01 00:00:00

  • Chromosomal DNA fingerprint patterns produced with IS6110 as strain-specific markers for epidemiologic study of tuberculosis.

    abstract::Mycobacterium tuberculosis isolates were studied by comparing chromosomal DNA fingerprint patterns produced by digestion of chromosomal DNA with BamHI, followed by agarose electrophoresis and hybridization with radiolabeled probes of insertion sequence IS6110. DNA fingerprints of 14 isolates from separate members of f...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.29.9.2030-2033.1991

    authors: Mazurek GH,Cave MD,Eisenach KD,Wallace RJ Jr,Bates JH,Crawford JT

    更新日期:1991-09-01 00:00:00

  • High-frequency switching in Candida strains isolated from vaginitis patients.

    abstract::High-frequency switching and strain variability at the site of infection was assessed in 11 patients with acute Candida albicans vaginitis. By cloning cells directly from the site of infection, it was demonstrated that 4 of the 11 isolates contained multiple-switch phenotypes at the site of infection and that 9 of the...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.25.9.1611-1622.1987

    authors: Soll DR,Langtimm CJ,McDowell J,Hicks J,Galask R

    更新日期:1987-09-01 00:00:00

  • Widespread transfer of resistance genes between bacterial species in an intensive care unit: implications for hospital epidemiology.

    abstract::A transferable plasmid encoding SHV-12 extended-spectrum beta-lactamase, TEM-116, and aminoglycoside resistance was responsible for two sequential clonal outbreaks of Enterobacter cloacae and Acinetobacter baumannii bacteria. A similar plasmid was present among isolates of four different bacterial species. Recognition...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.43.9.4862-4864.2005

    authors: Naiemi NA,Duim B,Savelkoul PH,Spanjaard L,de Jonge E,Bart A,Vandenbroucke-Grauls CM,de Jong MD

    更新日期:2005-09-01 00:00:00

  • Clinical evaluation of BioPlex 2200 HIV Ag-Ab, an automated screening method providing discrete detection of HIV-1 p24 antigen, HIV-1 antibody, and HIV-2 antibody.

    abstract::Early and accurate diagnosis is essential for optimal therapeutic outcomes in patients infected with HIV. Currently, none of the commercially available fourth-generation assays differentiate HIV-1 and HIV-2 antibodies (Ab) or the HIV-1 p24 antigen (Ag). The aim of this study was to evaluate the performance of a novel ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.02460-13

    authors: Salmona M,Delarue S,Delaugerre C,Simon F,Maylin S

    更新日期:2014-01-01 00:00:00

  • Biochemical markers of the penicillin-induced L phase of a group B, type III Streptococcus sp.

    abstract::The penicillin-induced L phase of growth of the group B, type III streptococcal strain 76-043 was examined for biochemical properties used for the identification of group B streptococci. After numerous serial subcultures in the cell wall-defective state, this stable L phase continued to produce hemolysin, hippuricase,...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.18.4.961-967.1983

    authors: Flores AE,Ferrieri P

    更新日期:1983-10-01 00:00:00

  • L-Arabinose-ornithine-Irgasan medium for differentiating Serratia species.

    abstract::A semisolid medium (designated Serratia differentiation medium) containing L-arabinose, ornithine, and selective inhibitor was used to differentiate three clinically encountered Serratia species. The inhibitor, Irgasan DP-300, was incorporated to eliminate false-positive reactions from most remaining Enterobacteriacea...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:

    authors: Gibson S,Friedman H

    更新日期:1978-03-01 00:00:00

  • Central venous catheter colonization by linezolid-resistant, vancomycin-susceptible Enterococcus faecalis.

    abstract::Resistance to linezolid is rare in clinical isolates of Enterococcus faecalis. A strain resistant to this antimicrobial but susceptible to vancomycin was found to cause central venous catheter colonization in a patient who never received linezolid. ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.44.5.1915-1916.2006

    authors: Marra AR,Major Y,Edmond MB

    更新日期:2006-05-01 00:00:00

  • Lack of characteristic hexagonal surface structure on a newly isolated influenza C virus.

    abstract::The hexagonal surface structure believed to be characteristic for influenza C virus was not initially observed for a newly isolated virus of this type. After a few additional egg passages of the virus, however, the hexagonal structure could be readily seen on many virions. ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:

    authors: Martin ML,Palmer EL,Kendal AP

    更新日期:1977-07-01 00:00:00

  • Survey of extended-spectrum beta-lactamases in clinical isolates of Escherichia coli and Klebsiella pneumoniae: prevalence of TEM-52 in Korea.

    abstract::Two hundred ninety isolates of Escherichia coli were investigated for the production of extended-spectrum beta-lactamases (ESBLs). Fourteen (4.8%) of the 290 strains were found to produce ESBLs. Each of the 14 strains produced one or two ESBLs, as follows: 10 strains produced TEM-52, 1 strain produced SHV-2a, 1 strain...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.37.6.1758-1763.1999

    authors: Pai H,Lyu S,Lee JH,Kim J,Kwon Y,Kim JW,Choe KW

    更新日期:1999-06-01 00:00:00

  • Growth of Cowdria ruminantium, the causative agent of heartwater, in a tick cell line.

    abstract::The tick-borne rickettsia Cowdria ruminantium has been propagated continuously for over 500 days in the Ixodes scapularis tick cell line IDE8 by using the Gardel isolate from bovine endothelial cells as an inoculum. Infection of the tick cells was confirmed by PCR, karyotyping, electron microscopy, and reinfection of ...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.38.3.1238-1240.2000

    authors: Bell-Sakyi L,Paxton EA,Munderloh UG,Sumption KJ

    更新日期:2000-03-01 00:00:00

  • Evaluation of Streck tissue fixative, a nonformalin fixative for preservation of stool samples and subsequent parasitologic examination.

    abstract::We undertook a study to evaluate Streck tissue fixative (STF) as a substitute for formalin and polyvinyl alcohol (PVA) in fecal preservation. A comparison of formalin, PVA, (mercuric chloride based), and STF was done by aliquoting fecal samples into each fixative. Stool specimens were collected in Haiti, and parasites...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/JCM.37.12.4113-4119.1999

    authors: Nace EK,Steurer FJ,Eberhard ML

    更新日期:1999-12-01 00:00:00

  • Detection of Helicobacter pylori in gastric mucosa of patients with gastroduodenal diseases by PCR-restriction analysis using the RNA polymerase gene (rpoB).

    abstract::A novel PCR restriction analysis method using the RNA polymerase beta-subunit- coding gene (rpoB) was employed to both detect and identify Helicobacter pylori in biopsy specimens and culture isolates. The rpoB DNAs (458 bp) were specifically amplified by PCR with the Helicobacter-specific primers (HF and HR). Based on...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/jcm.41.7.3387-3391.2003

    authors: Lim CY,Lee KH,Cho MJ,Chang MW,Kim SY,Myong NH,Lee WK,Rhee KH,Kook YH

    更新日期:2003-07-01 00:00:00

  • Use of genome selected repeated sequences increases the sensitivity of PCR detection of Tropheryma whipplei.

    abstract::The availability of the Tropheryma whipplei genome offers the putative possibility of choosing logical DNA targets. We applied a PCR assay (targeting repeated sequences of T. whipplei) to samples from patients with Whipple's disease and to those from members of a control group. When compared to the results seen with r...

    journal_title:Journal of clinical microbiology

    pub_type: 杂志文章

    doi:10.1128/jcm.42.1.401-403.2004

    authors: Fenollar F,Fournier PE,Robert C,Raoult D

    更新日期:2004-01-01 00:00:00