Identification of 4-hydroxynonenal-modified proteins in human osteoarthritic chondrocytes.

Abstract:

:The α,β-unsaturated aldehyde 4-hydroxynonenal (HNE) is formed through lipid peroxidation during oxidative stress. As a highly reactive electrophile, it is able to form adducts with various biomolecules, including proteins. These protein modifications could modulate many signaling pathways, as well as cell differentiation and proliferation, and thus could be highly important in the context of the extracellular matrix and degradation of articular cartilage. This study specifically investigated the role of HNE as a bioactive molecule in chondrocytes of osteoarthritis (OA) patients. Chondrocyte extracts of OA and non-OA patients were analyzed for HNE binding using Western blot and bottom-up LC-MS/MS analyses. HNE-modified histones, H2A and H2B, and histone deacetylase were identified using anti-HNE antibodies. Furthermore, peptide sequencing and database searching revealed 95 distinct HNE-modified proteins and their exact modification sites, with 88 protein adducts being unique to OA chondrocytes. HNE-proteins of specific interest included histone H2A, H2B and H4, collagen alpha-3(VI) chain, eukaryotic initiation factor 4A-I, and nucleolar RNA helicase 2. Comparing their MS/MS spectra to those of HNE-modified standard peptides further validated the six HNE-proteins. SIGNIFICANCE: HNE binding to proteins has been shown to result in multiple abnormalities of chondrocyte phenotype and function, suggesting its contribution in OA development. Considering the increased levels of HNE in OA cartilage, this reactive aldehyde could play a role in OA. This work represents a clinically-relevant in vivo study to demonstrate the pathophysiological role of HNE in human OA. Since HNE binding can alter protein conformation and function, it remains highly relevant to study the effects of this modification in OA.

journal_name

J Proteomics

journal_title

Journal of proteomics

authors

Geib T,Iacob C,Jribi R,Fernandes J,Benderdour M,Sleno L

doi

10.1016/j.jprot.2020.104024

subject

Has Abstract

pub_date

2021-02-10 00:00:00

pages

104024

eissn

1874-3919

issn

1876-7737

pii

S1874-3919(20)30392-4

journal_volume

232

pub_type

杂志文章
  • Proteomic identification of putative biomarkers for early detection of sudden cardiac death in a family with a LMNA gene mutation causing dilated cardiomyopathy.

    abstract:UNLABELLED:Dilated cardiomyopathy (DCM) is a severe heart disease characterized by progressive ventricular dilation and impaired systolic function of the left ventricle. We recently identified a novel pathogenic mutation in the LMNA gene in a family affected by DCM showing sudden death background. We now aimed to ident...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.07.020

    authors: Izquierdo I,Rosa I,Bravo SB,Guitián E,Pérez-Serra A,Campuzano O,Brugada R,Mangas A,García Á,Toro R

    更新日期:2016-10-04 00:00:00

  • Transcriptome-facilitated proteomic characterization of rear-fanged snake venoms reveal abundant metalloproteinases with enhanced activity.

    abstract::High-throughput technologies were used to identify venom gland toxin expression and to characterize the venom proteomes of two rear-fanged snakes, Ahaetulla prasina (Asian Green Vine Snake) and Borikenophis portoricensis (Puerto Rican Racer). Sixty-nine complete toxin-coding transcripts from 12 venom protein superfami...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.08.004

    authors: Modahl CM,Frietze S,Mackessy SP

    更新日期:2018-09-15 00:00:00

  • Characterization of the bovine milk proteome in early-lactation Holstein and Jersey breeds of dairy cows.

    abstract:UNLABELLED:Milk is a highly nutritious natural product that provides not only a rich source of amino acids to the consumer but also hundreds of bioactive peptides and proteins known to elicit health-benefitting activities. We investigated the milk protein profile produced by Holstein and Jersey dairy cows maintained un...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.09.024

    authors: Tacoma R,Fields J,Ebenstein DB,Lam YW,Greenwood SL

    更新日期:2016-01-01 00:00:00

  • Quantifying proteins at microgram levels integrating gel electrophoresis and smartphone technology.

    abstract::A combination between gel electrophoresis and smartphone technology is applied for quantifying proteins in a serum sample. Electrophoresis not only allows one to separate different proteins but also to build-up a calibration curve for those proteins. To expand its applicability, a smartphone allows one to capture a ge...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.12.002

    authors: de Jesus JR,Guimarães IC,Arruda MAZ

    更新日期:2019-04-30 00:00:00

  • Probing the conformational impact of detergents on the integral membrane protein LeuT by global HDX-MS.

    abstract::Neurotransmitter:sodium symporters (NSS) are integral membrane proteins (IMP), responsible for reuptake of neurotransmitters from the synaptic cleft. Due to challenges in production of mammalian NSS in their active form, the prokaryotic hydrophobic amino acid transporter, LeuT, served here as a steadfast model for elu...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103845

    authors: Möller IR,Merkle PS,Calugareanu D,Comamala G,Schmidt SG,Loland CJ,Rand KD

    更新日期:2020-08-15 00:00:00

  • From pH to MALDI-TOF: hundreds of spotted opportunities?

    abstract::Current protocols for quality assurance of platelet concentrates used in transfusion therapy include evaluation of platelet count and pH, in vitro measurements of platelet lysis, membrane activation and microparticle release and assays of platelet ability to respond to aggregation stimuli and to hypotonic shock. Unfor...

    journal_title:Journal of proteomics

    pub_type: 社论,评审

    doi:10.1016/j.jprot.2012.07.044

    authors: Rebulla P

    更新日期:2012-12-05 00:00:00

  • Inferring Plasmodium vivax protein biology by using omics data.

    abstract::Deciphering Plasmodium vivax biology has long been a challenge for groups working on this parasite, mainly due to the complications involved in propagating it in vitro. However, adapting P. vivax strains in non-human primates and the arrival of high-performance analysis methods has led to increased knowledge regarding...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2020.103719

    authors: Moreno-Pérez DA,Patarroyo MA

    更新日期:2020-04-30 00:00:00

  • Reductive chemical release of N-glycans as 1-amino-alditols and subsequent 9-fluorenylmethyloxycarbonyl labeling for MS and LC/MS analysis.

    abstract::Glycoproteins play pivotal roles in a series of biological processes and their glycosylation patterns need to be structurally and functionally characterized. However, the lack of versatile methods to release N-glycans as functionalized forms has been undermining glycomics studies. Here a novel method is developed for ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.06.002

    authors: Wang C,Qiang S,Jin W,Song X,Zhang Y,Huang L,Wang Z

    更新日期:2018-09-15 00:00:00

  • Quantitative proteomic analysis reveals protein expression changes in the murine neuronal secretome during apoptosis.

    abstract::Neurodegenerative diseases often lack early and specific diagnostic and prognostic biomarkers. Many studies are focusing on the cerebrospinal fluid (CSF) proteome to identify relevant biomarkers and therapeutic targets for these disorders. An alternative approach consists in comparing proteins secreted by healthy neur...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.09.013

    authors: Thouvenot E,Urbach S,Vigy O,Séveno M,Galéotti N,Nguyen G,Bockaert J,Marin P

    更新日期:2012-12-21 00:00:00

  • Differential proteome analysis of a selected bacterial strain isolated from a high background radiation area in response to radium stress.

    abstract::The present study describes the response of a bacterial strain, isolated from a hot spring in an area with the highest levels of natural radiation, under radium ((226)Ra) stress. The bacterium has been characterized as a novel and efficient radium biosorbent and identified as a variant of Serratia marcescens by bioche...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.05.020

    authors: Zakeri F,Sadeghizadeh M,Kardan MR,Shahbani Zahiri H,Ahmadian G,Masoumi F,Sharafi H,Rigi G,Vali H,Akbari Noghabi K

    更新日期:2012-08-03 00:00:00

  • Deep learning embedder method and tool for mass spectra similarity search.

    abstract::Spectral similarity calculation is widely used in protein identification tools and mass spectra clustering algorithms while comparing theoretical or experimental spectra. The performance of the spectral similarity calculation plays an important role in these tools and algorithms especially in the analysis of large-sca...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.104070

    authors: Qin C,Luo X,Deng C,Shu K,Zhu W,Griss J,Hermjakob H,Bai M,Perez-Riverol Y

    更新日期:2021-02-10 00:00:00

  • Poppea's bath liquor: the secret proteome of she-donkey's milk.

    abstract::Donkey's milk is today categorized among the best mother's milk substitute for allergic newborns, due to its much reduced or absent allergenicity, coupled to excellent palatability and nutritional value. However, up to the present, only a handful of proteins had been characterized, just about the standard eight to ten...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2011.05.036

    authors: Cunsolo V,Muccilli V,Fasoli E,Saletti R,Righetti PG,Foti S

    更新日期:2011-09-06 00:00:00

  • The use of omics profiling to improve outcomes of bone regeneration and osseointegration. How far are we from personalized medicine in dentistry?

    abstract::Increased life expectancy and broader restorative dental treatment alternatives for missing teeth have resulted in an increasing request of bone regeneration/augmentation procedures not only in healthy patients, but also in elderly and medically compromised ones. This is also combined with a growing demand for short i...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2018.01.017

    authors: Calciolari E,Donos N

    更新日期:2018-09-30 00:00:00

  • Charting the cellular and extracellular proteome analysis of Brevibacterium linens DSM 20158 with unsequenced genome by mass spectrometry-driven sequence similarity searches.

    abstract:UNLABELLED:Brevibacterium linens DSM 20158 is an industrially important actinobacterium which is well-known for the production of amino acids and enzymes. However, as this strain has an unsequenced genome, there is no detailed information regarding its proteome although another strain of this microbe, BL2, has a shotgu...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2013.02.029

    authors: Shabbiri K,Botting CH,Adnan A,Fuszard M

    更新日期:2013-05-27 00:00:00

  • Alpha-Dystrobrevin and its associated proteins in human promyelocytic leukemia cells induced to apoptosis.

    abstract::Dystrobrevin is a dystrophin-related component of the dystrophin-associated protein complex (DAPC). Using alpha-dystrobrevin as indicator, we aimed to elucidate the interaction network of the DAPC with other proteins during apoptosis of promyelocytic HL-60 cells. The precise role(s) of DBs are not known, but we and ot...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.03.041

    authors: Navakauskienė R,Treigytė G,Borutinskaitė VV,Matuzevičius D,Navakauskas D,Magnusson KE

    更新日期:2012-06-18 00:00:00

  • Cellular proteome alterations in response to enterovirus 71 and coxsackievirus A16 infections in neuronal and intestinal cell lines.

    abstract::Hand, foot and mouth disease is mainly caused by enterovirus A71 (EV-A71) and coxsackievirus A16 (CV-A16), but EV-A71 is also associated with severe neurological complications. Host factors may contribute to the different clinical outcomes of EV-A71 and CV-A16 infections. A neurovirulent EV-A71 strain (EV-A71/UH1) fro...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2015.05.016

    authors: Chan SY,Sam IC,Lai JK,Chan YF

    更新日期:2015-07-01 00:00:00

  • Proteome studies of bacterial antibiotic resistance mechanisms.

    abstract::Ever since antibiotics were used to help humanity battle infectious diseases, microorganisms straight away fought back. Antibiotic resistance mechanisms indeed provide microbes with possibilities to by-pass and survive the action of antibiotic drugs. Several methods have been employed to identify these microbial resis...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2013.10.027

    authors: Vranakis I,Goniotakis I,Psaroulaki A,Sandalakis V,Tselentis Y,Gevaert K,Tsiotis G

    更新日期:2014-01-31 00:00:00

  • Characterization of maize allergens - MON810 vs. its non-transgenic counterpart.

    abstract::One of the main concerns about genetically modified foods and their potential impacts on human health is that the introduction of a new/ altered gene may putatively alter the expression of others, namely endogenous allergens. We intended to evaluate, and to compare, using quantitative real time RT-PCR technique, the e...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.01.005

    authors: Fonseca C,Planchon S,Renaut J,Oliveira MM,Batista R

    更新日期:2012-04-03 00:00:00

  • Quantitative proteomics of the yeast Hsp70/Hsp90 interactomes during DNA damage reveal chaperone-dependent regulation of ribonucleotide reductase.

    abstract:UNLABELLED:The highly conserved molecular chaperones Hsp90 and Hsp70 are indispensible for folding and maturation of a significant fraction of the proteome, including many proteins involved in signal transduction and stress response. To examine the dynamics of chaperone-client interactions after DNA damage, we applied ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.09.028

    authors: Truman AW,Kristjansdottir K,Wolfgeher D,Ricco N,Mayampurath A,Volchenboum SL,Clotet J,Kron SJ

    更新日期:2015-01-01 00:00:00

  • A proteomic analysis of p53-independent induction of apoptosis by bortezomib in 4T1 breast cancer cell line.

    abstract:UNLABELLED:The 26S proteasome is a proteolytic enzyme found in both cytoplasm and nucleus. In this study, we examined the differential expression of proteasome inhibitor bortezomib-induced proteins in p53-deficient 4T1 cells. It was found that GRP78 and TCEB2 were over-expressed in response to treatment with bortezomib...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.09.010

    authors: Yerlikaya A,Okur E,Baykal AT,Acılan C,Boyacı I,Ulukaya E

    更新日期:2015-01-15 00:00:00

  • Differential proteomics analysis to identify proteins and pathways associated with male sterility of soybean using iTRAQ-based strategy.

    abstract:UNLABELLED:To further elucidate the molecular mechanism of cytoplasmic male sterility (CMS) in soybean, a differential proteomic analysis was completed between the CMS line NJCMS1A and its maintainer NJCMS1B using iTRAQ-based strategy. As a result, 180 differential abundance proteins (DAPs) were identified, of which, 6...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2016.02.017

    authors: Li J,Ding X,Han S,He T,Zhang H,Yang L,Yang S,Gai J

    更新日期:2016-04-14 00:00:00

  • Qualitative and quantitative peptidomic and proteomic approaches to phenotyping chicken semen.

    abstract:UNLABELLED:Understanding of the avian male gamete biology is essential to improve the conservation of genetic resources and performance in farming. In this study, the chicken semen peptidome/proteome and the molecular phenotype related to sperm quality were investigated. Spermatozoa (SPZ) and corresponding seminal plas...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2014.07.024

    authors: Labas V,Grasseau I,Cahier K,Gargaros A,Harichaux G,Teixeira-Gomes AP,Alves S,Bourin M,Gérard N,Blesbois E

    更新日期:2015-01-01 00:00:00

  • Proteomic analysis of thioproline misincorporation in Escherichia coli.

    abstract::Recently it was discovered that thioproline, an unnatural analog of proline, can arise in vivo from the reaction of cysteine and formaldehyde in cells under oxidative stress. Sequence-specific bioincorporation of thioproline into proteins was studied via shotgun proteomics of Escherichia coli (E. coli) cells. In a str...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2019.103541

    authors: Liu J,Hao C,Wu L,Madej D,Chan W,Lam H

    更新日期:2020-01-06 00:00:00

  • Proteomics survey of Solanaceae family: Current status and challenges ahead.

    abstract::Solanaceae is one of the major economically important families of higher plants and has played a central role in human nutrition since the dawn of human civilization. Therefore, researchers have always been interested in understanding the complex behavior of Solanaceae members to identify key transcripts, proteins or ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章,评审

    doi:10.1016/j.jprot.2017.05.016

    authors: Ghatak A,Chaturvedi P,Paul P,Agrawal GK,Rakwal R,Kim ST,Weckwerth W,Gupta R

    更新日期:2017-10-03 00:00:00

  • A proteomics approach to identify proteins differentially expressed in Douglas-fir seedlings infected by Phellinus sulphurascens.

    abstract::We carried out a comparative proteomic study to explore the molecular mechanisms that underlie the defense response of Douglas-fir (DF, Pseudotsuga menziesii) to laminated root rot, a disease caused by Phellinus sulphurascens. 2-DE was conducted on proteins extracted from roots of laboratory-grown, young DF seedlings ...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2008.06.004

    authors: Islam MA,Sturrock RN,Ekramoddoullah AK

    更新日期:2008-10-07 00:00:00

  • Differential impacts of individual and combined exposures of deoxynivalenol and zearalenone on the HepaRG human hepatic cell proteome.

    abstract::Numerous surveys have highlighted the natural co-occurrence of deoxynivalenol (DON) and zearalenone (ZEA) mycotoxins in food and feed. Nevertheless, data regarding cellular mechanisms involved in response to their individual and simultaneous exposures are lacking. In this study, in order to analyze how low mycotoxin d...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2017.11.025

    authors: Smith MC,Timmins-Schiffman E,Coton M,Coton E,Hymery N,Nunn BL,Madec S

    更新日期:2018-02-20 00:00:00

  • Proteomic analysis of liver in diet-induced Hyperlipidemic mice under Fructus Rosa roxburghii action.

    abstract::Fructus Rosae Roxburghii (FRR) has been considered as edible and medicinal fruit possessing antiatherosclerotic effect, but the mechanism is still unclear. HLP is material basis for AS formation. Under FRR action, TC, TG, LDL, HDL and ASI in serum were regulated to control level. Differentially expressed proteins in l...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2020.103982

    authors: Song P,Shen X

    更新日期:2021-01-06 00:00:00

  • Application of integrated transcriptomic, proteomic and metabolomic profiling for the delineation of mechanisms of drug induced cell stress.

    abstract::High content omic techniques in combination with stable human in vitro cell culture systems have the potential to improve on current pre-clinical safety regimes by providing detailed mechanistic information of altered cellular processes. Here we investigated the added benefit of integrating transcriptomics, proteomics...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2012.11.022

    authors: Wilmes A,Limonciel A,Aschauer L,Moenks K,Bielow C,Leonard MO,Hamon J,Carpi D,Ruzek S,Handler A,Schmal O,Herrgen K,Bellwon P,Burek C,Truisi GL,Hewitt P,Di Consiglio E,Testai E,Blaauboer BJ,Guillou C,Huber CG,Luka

    更新日期:2013-02-21 00:00:00

  • Exosomes derived from calcium oxalate-exposed macrophages enhance IL-8 production from renal cells, neutrophil migration and crystal invasion through extracellular matrix.

    abstract::Deposition of calcium oxalate (CaOx) crystals in renal interstitium is one of the key factors that cause progressive inflammation in kidney stone disease. Macrophages are responsible for elimination of these crystals but their roles to worsen inflammatory process remain under-investigated. This study thus aimed to def...

    journal_title:Journal of proteomics

    pub_type: 杂志文章

    doi:10.1016/j.jprot.2018.06.015

    authors: Singhto N,Thongboonkerd V

    更新日期:2018-08-15 00:00:00

  • Earwax: A neglected body secretion or a step ahead in clinical diagnosis? A pilot study.

    abstract::This work combines the advantages of volatile metabolites profiling as a young growing research field with a non-invasive sampling technique using earwax "a neglected body secretion" for detection and monitoring of biomarkers for diabetes mellitus (types 1 and 2). Earwax samples were collected from 26 diabetic patient...

    journal_title:Journal of proteomics

    pub_type: 临床试验,杂志文章

    doi:10.1016/j.jprot.2017.03.005

    authors: Shokry E,de Oliveira AE,Avelino MAG,de Deus MM,Filho NRA

    更新日期:2017-04-21 00:00:00