Abstract:
:The diversity and abundance of Burkholderia species in sugarcane field soils were investigated by a 16S rRNA gene-based approach using genus-specific primers. A total of 365,721 sequences generated by the Illumina MiSeq platform were assigned to the genus Burkholderia. Nearly 58% of these sequences were placed in a previously defined cluster, including stinkbug symbionts. Quantitative PCR analysis revealed a consistent number of 16S rRNA gene copies for Burkholderia species (10(7) g(-1) soil) across the sampled fields. C/N, pH, and nitrate concentrations were important factors shaping the Burkholderia community structure; however, their impacts were not significant considering the overall genus size.
journal_name
Microbes Environjournal_title
Microbes and environmentsauthors
Tago K,Itoh H,Kikuchi Y,Hori T,Sato Y,Nagayama A,Okubo T,Navarro R,Aoyagi T,Hayashi K,Hayatsu Mdoi
10.1264/jsme2.ME14122subject
Has Abstractpub_date
2014-01-01 00:00:00pages
434-7issue
4eissn
1342-6311issn
1347-4405pii
DN/JST.JSTAGE/jsme2/ME14122journal_volume
29pub_type
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