Abstract:
:The effects of a nitrogen-fixing tree, black locust (Robinia pseudoacacia), on the distribution of bacterial species were examined in a Japanese black pine (Pinus thunbergii) and black locust-dominated area. DNA was extracted from the soil at depths of 0-5 and 5-10 cm, collected at the border between a Japanese black pine-dominated forest and a black locust-dominated forest, and the distribution of bacterial species was investigated by denaturing gradient gel electrophoresis (DGGE). The bacterial communities did not differ between the two forests. The distribution of some bacterial species correlated significantly with soil pH, soil carbon [C], soil nitrogen [N], and soil N/phosphate [P], but not with soil C/N or soil P. The distributional relationships between ectomycorrhizal (ECM) fungal species and bacterial species were also analyzed. A positive correlation was observed between the distribution of some ECM fungi and bacterial species. These bacteria may have some interactions with ECM fungi in the field.
journal_name
Microbes Environjournal_title
Microbes and environmentsauthors
Taniguchi T,Kataoka R,Tamai S,Yamanaka N,Futai Kdoi
10.1264/jsme2.me08560subject
Has Abstractpub_date
2009-01-01 00:00:00pages
246-52issue
3eissn
1342-6311issn
1347-4405pii
JST.JSTAGE/jsme2/ME08560journal_volume
24pub_type
杂志文章abstract::The splicing of a bacterial group II subclass B intron B.me.I1 from Bacillus megaterium chromosomes was investigated. RT-PCR and nucleic acid hybridization methods were used to understand the role of the intron-encoded protein (IEP) in the splicing of B.me.I1. An in vivo assay showed that the splicing occurred in the ...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.me08540
更新日期:2009-01-01 00:00:00
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journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME18065
更新日期:2018-09-29 00:00:00
abstract::The Gram-negative marine propylene-assimilating bacterium, strain PE-TB08W, was isolated from surface seawater. A structural gene analysis using the 16S rRNA gene showed 96, 94, and 95% similarities to Halioglobus species, Haliea sp. ETY-M, and Haliea sp. ETY-NAG, respectively. A phylogenetic tree analysis showed that...
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更新日期:2019-03-30 00:00:00
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journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.me11329
更新日期:2012-01-01 00:00:00
abstract::Diarrhea is often associated with marked alterations in the intestinal microbiota, termed dysbiosis; however, limited information is currently available on the intestinal microbiota in captive golden snub-nosed monkeys (Rhinopithecus roxellana) with diarrhea. We herein characterized the fecal microbiota in diarrhea an...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME17163
更新日期:2018-09-29 00:00:00
abstract::Oligosaline lakes in arid regions provide indispensable water resources for humans; however, information on the bacterial community composition (BCC) of this ecosystem is limited. In the present study, we explored seasonal and vertical variations in BCC in Lake Bosten, a unique oligosaline lake (1.2‰ salinity) in arid...
journal_title:Microbes and environments
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doi:10.1264/jsme2.ME14177
更新日期:2015-01-01 00:00:00
abstract::N-Acylhomoserine lactones (AHLs) are used as quorum-sensing signaling molecules by many Gram-negative bacteria. Here, 413 bacterial strains were obtained from the roots of potato plants and screened for AHL-degrading bacteria using Chromobacterium violaceum reporter strains. Sixty one isolates degraded N-hexanoyl-L-ho...
journal_title:Microbes and environments
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更新日期:2011-01-01 00:00:00
abstract::Effects of different land uses on densities of Escherichia coli, enterococci, and Clostridium perfringens in the water and soil of a tropical watershed were investigated. Densities of fecal indicator bacteria (FIBs) in the watershed exhibited a clear land-use dependency in the stream water. Significantly higher concen...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.me11115
更新日期:2011-01-01 00:00:00
abstract::Arsenic (As) is a widely distributed toxic element in the environment and microorganisms have developed resistance mechanisms in order to tolerate it. The cellular response of the chemoorganotrophic arsenite (As[III])-oxidizing α-Proteobacteria, Sinorhizobium sp. strain A2, to arsenic was examined in the present study...
journal_title:Microbes and environments
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doi:10.1264/jsme2.ME15096
更新日期:2015-01-01 00:00:00
abstract::The aim of the study was to survey cultivable heterotrophic bacteria from sea ice samples collected from Peter the Great Bay of the Sea of Japan, and to test the isolates for antagonistic activity. A total of 195 strains were isolated and investigated by a phenotypic approach. The 16S rRNA gene sequence analysis of th...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.23.209
更新日期:2008-01-01 00:00:00
abstract::A wide variety of haloorganic compounds undergo reductive dehalogenation by certain anaerobic microorganisms. Metabolic reductive dehalogenation is coupled with energy-conserving respiratory electron transport in which a halogenated compound is used as the terminal electron acceptor, the biological process called deha...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.23.1
更新日期:2008-01-01 00:00:00
abstract::Microbes interact with each other in multicellular communities and this interaction enables certain microorganisms to survive in various environments. Pseudomonas aeruginosa is a highly adaptable bacterium that ubiquitously inhabits diverse environments including soil, marine habitats, plants and animals. Behind this ...
journal_title:Microbes and environments
pub_type: 杂志文章,评审
doi:10.1264/jsme2.me12167
更新日期:2013-01-01 00:00:00
abstract::MicroRNAs (miRNAs) are a group of small non-coding RNAs that suppress the expression of target mRNAs. The seed sequence of miRNA plays a crucial role in recognizing the 3'-untranslated region of the target mRNA. Cells infected with a simian foamy virus (SFV) isolated from an African green monkey (Chlorocebus aethiops)...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME19130
更新日期:2020-01-01 00:00:00
abstract::Trichophyton ajelloi is a geophilic dermatophyte that specializes in the decomposition of native keratin. It exists in soil with a permanent influx of keratin matter. In the present study, two PCR-based methods were used for the identification and intra-species differentiation of T. ajelloi strains isolated from 3 typ...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.me13160
更新日期:2014-01-01 00:00:00
abstract::We investigated the effects of the water status (flooded or non-flooded) and presence of the nosZ gene in bradyrhizobia on the bradyrhizobial community structure in a factorial experiment that examined three temperature levels (20°C, 25°C, and 30°C) and two soil types (andosol and gray lowland soil) using microcosm in...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME16132
更新日期:2017-06-24 00:00:00
abstract::The relative isolation and unique physical properties of the Savusavu Hot Springs in Fiji may yield unique thermophiles. This study was conducted to determine the presence of aerobic thermophilic bacteria in these hot springs. A total of 104 thermophilic bacterial isolates were characterized and using Thermus and Baci...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.me08105
更新日期:2008-01-01 00:00:00
abstract::A dissimilatory nitrate reduction to ammonium (DNRA) microbial community was developed under a high organic carbon to nitrate (C/NO3-) ratio in an anoxic semi-continuous sequencing batch reactor (SBR) fed with glucose as the source of carbon and NO3- as the electron acceptor. Activated sludge collected from a municipa...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME17193
更新日期:2018-09-29 00:00:00
abstract::Terrestrial hydrocarbon seeps are an important source of naturally emitted methane over geological time. The exact community compositions responsible for carbon cycling beneath these surface features remain obscure. As sulfate reduction represents an essential process for anoxic organic mineralization, this study coll...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME14086
更新日期:2014-01-01 00:00:00
abstract::Recent studies demonstrated that phylogenetically more diverse and abundant bacteria and fungi than previously considered are responsible for denitrification in terrestrial environments. We herein examined the effects of land-use types on the community composition of those denitrifying microbes based on their nitrite ...
journal_title:Microbes and environments
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doi:10.1264/jsme2.ME19064
更新日期:2020-01-01 00:00:00
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journal_title:Microbes and environments
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doi:10.1264/jsme2.ME17014
更新日期:2017-06-24 00:00:00
abstract::Chitin amendment is an agricultural management strategy for controlling soil-borne plant disease. We previously reported an exponential decrease in chitin added to incubated upland soil. We herein investigated the transition of the bacterial community structure in chitin-degrading soil samples over time and the charac...
journal_title:Microbes and environments
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abstract::A comprehensive survey of bacterial and archaeal community structures within granular sludges taken from twelve different types of full-scale, food-processing wastewater-treating, upflow anaerobic sludge blanket (UASB) reactors was performed with a 16S rRNA gene-based clone library method. In total, 1,282 bacterial 16...
journal_title:Microbes and environments
pub_type: 杂志文章
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更新日期:2009-01-01 00:00:00
abstract::A newly-developed molecular method, hierarchical oligonucleotide primer extension (HOPE), was used to analyze various groups within the species Cylindrospermopsis raciborskii. PCR-amplified internally transcribed spacer sequences of 16S-23S from C. raciborskii in reservoir samples of Taiwan and Kinmen were examined. O...
journal_title:Microbes and environments
pub_type: 杂志文章
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更新日期:2010-01-01 00:00:00
abstract::The diversity and abundance of Burkholderia species in sugarcane field soils were investigated by a 16S rRNA gene-based approach using genus-specific primers. A total of 365,721 sequences generated by the Illumina MiSeq platform were assigned to the genus Burkholderia. Nearly 58% of these sequences were placed in a pr...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME14122
更新日期:2014-01-01 00:00:00
abstract::Symbioses have played pivotal roles in biological, ecological, and evolutionary diversification. Symbiotic bacteria affect the biology of hosts in a number of ways. Esteya vermicola, an endoparasitic nematophagous fungus, has high infectivity in the pine wood nematode (PWN), which causes devastating ecological damage ...
journal_title:Microbes and environments
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doi:10.1264/jsme2.ME16167
更新日期:2017-09-27 00:00:00
abstract::Various DNA extraction methods are often used interchangeably for the characterization of microbial communities despite indications that different techniques produce disparate results. The microbiomes of two ascidian species were herein characterized using two common DNA extraction kits, the DNeasy Blood and Tissue Ki...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME18031
更新日期:2018-12-28 00:00:00
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journal_title:Microbes and environments
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更新日期:2016-09-29 00:00:00
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journal_title:Microbes and environments
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更新日期:2016-12-23 00:00:00
abstract::We investigated biofilm formation on biodegradable plastics in freshwater samples. Poly(3-hydroxybutyrate-co-3-hydroxyhexanoate) (PHBH) was covered by a biofilm after an incubation in freshwater samples. A next generation sequencing analysis of the bacterial communities of biofilms that formed on PHBH films revealed t...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME18033
更新日期:2018-09-29 00:00:00
abstract::Chemosynthetic microbial communities develop and form dense cell aggregates in slightly alkaline sulfidic hot springs in the temperature range of 70-86°C at Nakabusa, Japan. Nitrogenase activity has recently been detected in the microbial communities collected. To identify possible members capable of nitrogen fixation...
journal_title:Microbes and environments
pub_type: 杂志文章
doi:10.1264/jsme2.ME18030
更新日期:2018-12-28 00:00:00