Epigenetic chromatin modifications in barley after mutagenic treatment.

Abstract:

:In addition to their normal developmental processes, plants have evolved complex genetic and epigenetic regulatory mechanisms to cope with various environmental stresses. It has been shown that both DNA methylation and histone modifications are involved in DNA damage response to various types of stresses. In this study, we focused on the involvement of two mutagenic agents, chemical (maleic acid hydrazide; MH) and physical (gamma rays), on the global epigenetic modifications of chromatin in barley. Our results indicate that both mutagens strongly influence the level of histone methylation and acetylation. Moreover, we found that gamma irradiation, in contrast to MH, has a more robust influence on the DNA methylation level. This is the first study that brings together mutagenic treatment along with its impact at the level of epigenetic modifications examined using the immunohistochemical method.

journal_name

J Appl Genet

authors

Braszewska-Zalewska A,Tylikowska M,Kwasniewska J,Szymanowska-Pulka J

doi

10.1007/s13353-014-0226-9

subject

Has Abstract

pub_date

2014-11-01 00:00:00

pages

449-56

issue

4

eissn

1234-1983

issn

2190-3883

journal_volume

55

pub_type

杂志文章
  • Genetic analysis of a red tilapia (Oreochromis spp.) population undergoing three generations of selection for increased body weight at harvest.

    abstract::Quantitative genetic analysis was performed on 10,919 data records collected over three generations from the selection programme for increased body weight at harvest in red tilapia (Oreochromis spp.). They were offspring of 224 sires and 226 dams (50 sires and 60 dams per generation, on average). Linear mixed models w...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/s13353-017-0411-8

    authors: Hamzah A,Thoa NP,Nguyen NH

    更新日期:2017-11-01 00:00:00

  • Statistical measures of uncertainty for branches in phylogenetic trees inferred from molecular sequences by using model-based methods.

    abstract::In recent years, the emphasis of theoretical work on phylogenetic inference has shifted from the development of new tree inference methods to the development of methods to measure the statistical support for the topologies. This paper reviews 3 approaches to assign support values to branches in trees obtained in the a...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章,评审

    doi:10.1007/BF03195249

    authors: Wróbel B

    更新日期:2008-01-01 00:00:00

  • Gene expression profiling in skeletal muscle of Holstein-Friesian bulls with single-nucleotide polymorphism in the myostatin gene 5'-flanking region.

    abstract::Myostatin (GDF-8) is a key protein responsible for skeletal muscle growth and development, thus mutations in the mstn gene can have major economic and breeding consequences. The aim of the present study was to investigate myostatin gene expression and transcriptional profile in skeletal muscle of Holstein-Friesian (Bl...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/BF03195620

    authors: Sadkowski T,Jank M,Zwierzchowski L,Siadkowska E,Oprzadek J,Motyl T

    更新日期:2008-01-01 00:00:00

  • Internal correspondence analysis of codon and amino-acid usage in thermophilic bacteria.

    abstract::Starting from two datasets of codon usage in coding sequences from mesophilic and thermophilic bacteria, we used internal correspondence analysis to study the variability of codon usage within and between species, and within and between amino acids. The first dataset included 18,958,458 codons from 58,482 coding seque...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:

    authors: Lobry JR,Chessel D

    更新日期:2003-01-01 00:00:00

  • New PAH gene promoter KLF1 and 3'-region C/EBPalpha motifs influence transcription in vitro.

    abstract::Phenylketonuria (PKU) is a metabolic disease caused by mutations in the phenylalanine hydroxylase (PAH) gene. Although the PAH genotype remains the main determinant of PKU phenotype severity, genotype-phenotype inconsistencies have been reported. In this study, we focused on unanalysed sequences in non-coding PAH gene...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/s13353-016-0359-0

    authors: Klaassen K,Stankovic B,Kotur N,Djordjevic M,Zukic B,Nikcevic G,Ugrin M,Spasovski V,Srzentic S,Pavlovic S,Stojiljkovic M

    更新日期:2017-02-01 00:00:00

  • Founder event and its effect on genetic variation in translocated populations of noble crayfish (Astacus astacus).

    abstract::Establishing translocated populations is a common process to preserve and maintain genetic diversity of threatened species. In 2001, three translocated populations of noble crayfish (Astacus astacus) were established in the Czech Republic, founded by either adult or juvenile individuals from three particular source po...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/s13353-015-0296-3

    authors: Bláha M,Žurovcová M,Kouba A,Policar T,Kozák P

    更新日期:2016-02-01 00:00:00

  • Molecular mapping of powdery mildew resistance gene Eg-3 in cultivated oat (Avena sativa L. cv. Rollo).

    abstract::Powdery mildew is a prevalent fungal disease affecting oat (Avena sativa L.) production in Europe. Common oat cultivar Rollo was previously shown to carry the powdery mildew resistance gene Eg-3 in common with cultivar Mostyn. The resistance gene was mapped with restriction fragment length polymorphism (RFLP) markers ...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/s13353-011-0077-6

    authors: Mohler V,Zeller FJ,Hsam SL

    更新日期:2012-05-01 00:00:00

  • Genetic variability of milk fatty acids.

    abstract::The milk fatty acid (FA) profile is far from the optimal fat composition in regards to human health. The natural sources of variation, such as feeding or genetics, could be used to increase the concentrations of unsaturated fatty acids. The impact of feeding is well described. However, genetic effects on the milk FA c...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/BF03195649

    authors: Arnould VM,Soyeurt H

    更新日期:2009-01-01 00:00:00

  • Association between single-nucleotide polymorphisms of selected genes involved in the response to DNA damage and risk of colon, head and neck, and breast cancers in a Polish population.

    abstract::Single-nucleotide polymorphisms in genes involved in DNA-damage-induced responses are reported frequently to be a risk factor in various cancer types. Here we analysed polymorphisms in 5 genes involved in DNA repair (XPD Asp312Asn and Lys751Gln, XRCC1 Arg399Gln, APE1 Asp148Glu, NBS1 Glu185Gln, and XPA G-4A) and in a g...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/BF03208865

    authors: Jelonek K,Gdowicz-Klosok A,Pietrowska M,Borkowska M,Korfanty J,Rzeszowska-Wolny J,Widlak P

    更新日期:2010-01-01 00:00:00

  • A novel WDR62 missense mutation in microcephaly with abnormal cortical architecture and review of the literature.

    abstract::Autosomal recessive primary microcephaly (MCPH) is a group of rare neurodevelopmental diseases with severe microcephaly at birth. One type of the disorder, MCPH2, is caused by biallelic mutations in the WDR62 gene, which encodes the WD repeat-containing protein 62. Patients with WDR62 mutation may have a wide range of...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s13353-019-00486-y

    authors: Zombor M,Kalmár T,Nagy N,Berényi M,Telcs B,Maróti Z,Brandau O,Sztriha L

    更新日期:2019-05-01 00:00:00

  • The KVLQT1 gene is not a common target for mutations in patients with various heart pathologies.

    abstract::The long QT syndrome (LQTS) is a disorder of ventricular repolarization that exposes affected individuals to cardiac arrhythmias and sudden death. The first gene for LQTS has been mapped to chromosome 11 p.15.5 by genome-wide linkage analysis. This gene, originally named KVLQT1 (and later KCNQ1), is a novel potassium ...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:

    authors: Moric E,Herbert E,Mazurek U,Samelska J,Cholewa K,Trusz-Gluza M,Wilczok T

    更新日期:2002-01-01 00:00:00

  • Genetic structure and phylogenetic relationships of the Polish Heavy horse.

    abstract::In this study a wide range of genetic markers (12 microsatellites, 7 blood-group loci, 10 blood-protein loci) and mitochondrial DNA (mtDNA) were used to assess genetic diversity in Polish Heavy horses. Three random samples were sequenced for 421 bp of the mitochondrial D-loop region, but no clear phylogenetic patterns...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/BF03194645

    authors: Iwańczyk E,Juras R,Cholewiński G,Cothran EG

    更新日期:2006-01-01 00:00:00

  • Current genetic methodologies in the identification of disaster victims and in forensic analysis.

    abstract::This review presents the basic problems and currently available molecular techniques used for genetic profiling in disaster victim identification (DVI). The environmental conditions of a mass disaster often result in severe fragmentation, decomposition and intermixing of the remains of victims. In such cases, traditio...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s13353-011-0068-7

    authors: Ziętkiewicz E,Witt M,Daca P,Zebracka-Gala J,Goniewicz M,Jarząb B,Witt M

    更新日期:2012-02-01 00:00:00

  • Karyological characterization of sugar beet gynogenetic lines cultured in vitro.

    abstract::Flow cytometry was used to screen ploidy levels in 47 cultured in vitro sugar beet gynogenetic lines of various origin and age, obtained after plant regeneration from unfertilized ovules. When donor plants were diploid, the majority of regenerants were found to have cells with 1C, 2C and 4C relative DNA content (mainl...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:

    authors: Svirshchevskaya A,Dolezel J

    更新日期:2001-01-01 00:00:00

  • Decreased neural stem cell proliferation and olfaction in mouse models of Niemann-Pick C1 disease and the response to hydroxypropyl-β-cyclodextrin.

    abstract::The Npc1nih/nih-null model and the Npc1nmf164/nmf164 hypomorph models of Niemann-Pick C1 (NPC1) disease show defects in olfaction. We have tested the effects of the life-prolonging treatment hydroxypropyl-beta-cyclodextrin (HPBCD) on olfaction and neural stem cell numbers when delivered either systemically or by nasal...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/s13353-019-00517-8

    authors: Dragotto J,Palladino G,Canterini S,Caporali P,Patil R,Fiorenza MT,Erickson RP

    更新日期:2019-11-01 00:00:00

  • Mouse models of atherosclerosis: explaining critical roles of lipid metabolism and inflammation.

    abstract::Atherosclerosis is the most common cause of death globally. It is a complex disease involving morphological and cellular changes in vascular walls. Studying molecular mechanism of the disease is hindered by disease complexity and lack of robust noninvasive diagnostics in human. Mouse models are the most popular animal...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章,评审

    doi:10.1007/s13353-013-0134-4

    authors: Mukhopadhyay R

    更新日期:2013-05-01 00:00:00

  • A de novo interstitial 6q deletion in a boy with a split hand malformation.

    abstract::We report on a de novo interstitial deletion of (6)(q15q22.2) in a 5-year-old boy with developmental delay, microcephaly, facial dysmorphism, cryptorchidism, congenital heart defect, and split-hand malformation. Previous reports and this patient suggest that 6q21 may contain a gene or genes related either directly or ...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/BF03195240

    authors: Duran-Gonzalez J,Gutierrez-Angulo M,Garcia-Cruz D,Ayala Mde L,Padilla M,Davalos IP

    更新日期:2007-01-01 00:00:00

  • Neural stem cell implantation extends life in Niemann-Pick C1 mice.

    abstract::In order to evaluate the phenotypic effects of implanted neural stem cells (NSCs) in the mouse model of Niemann-Pick C (NPC) disease, we injected a well-characterized clone of murine NSCs into the cerebella of neonatal Npc1(-/-) and control mice. The implanted cells survived and were abundant in some regions of the ce...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/BF03195222

    authors: Ahmad I,Hunter RE,Flax JD,Snyder EY,Erickson RP

    更新日期:2007-01-01 00:00:00

  • Molecular characterisation of tumour necrosis factor alpha and its potential connection with lipoprotein lipase and peroxisome proliferator-activated receptors in blunt snout bream (Megalobrama amblycephala).

    abstract::Tumour necrosis factor alpha (TNF-α) is one kind of cytokines which is related to inflammation and lipid metabolism. TNF-α cDNA was cloned from the liver of blunt snout bream (Megalobrama amblycephala) through real-time polymerase chain reaction (PCR) and rapid amplification of cDNA ends (RACE) methods. The full-lengt...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/s13353-017-0390-9

    authors: Zhou M,Mi HF,Liu WB,Wu YY,Wang KZ,Jiang GZ

    更新日期:2017-08-01 00:00:00

  • Combining microsatellite and pedigree data to estimate relationships among Skyros ponies.

    abstract::Relationship coefficients are particularly useful to improve genetic management of endangered populations. These coefficients are traditionally based on pedigree data, but in case of incomplete or inexistent pedigrees they are replaced by coefficients calculated from molecular data. The main objective of this study wa...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/BF03195664

    authors: Bomcke E,Gengler N

    更新日期:2009-01-01 00:00:00

  • Subtelomeric rearrangements in Polish subjects with intellectual disability and dysmorphic features.

    abstract::Fluorescent in situ hybridization (FISH) was performed in 76 patients referred to our department because of intellectual disability and dysmorphic features that can be related to subtelomeric microaberrations. In all the patients, conventional cytogenetic methods revealed normal karyotype. Four (5.3%) subtelomeric rea...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/BF03195731

    authors: Bogdanowicz J,Pawłowska B,Ilnicka A,Gawlik-Zawiślak S,Jóźwiak A,Sobiczewska B,Zdzienicka E,Korniszewski L,Zaremba J

    更新日期:2010-01-01 00:00:00

  • Gene expression analysis identifies new candidate genes associated with the development of black skin spots in Corriedale sheep.

    abstract::The white coat colour of sheep is an important economic trait. For unknown reasons, some animals are born with, and others develop with time, black skin spots that can also produce pigmented fibres. The presence of pigmented fibres in the white wool significantly decreases the fibre quality. The aim of this work was t...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/s13353-011-0066-9

    authors: Peñagaricano F,Zorrilla P,Naya H,Robello C,Urioste JI

    更新日期:2012-02-01 00:00:00

  • Development of an efficient retrotransposon-based fingerprinting method for rapid pea variety identification.

    abstract::Fast and efficient DNA fingerprinting of crop cultivars and individuals is frequently used in both theoretical population genetics and in practical breeding. Numerous DNA marker technologies exist and the ratio of speed, cost and accuracy are of importance. Therefore even in species where highly accurate and polymorph...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/BF03194627

    authors: Smýkal P

    更新日期:2006-01-01 00:00:00

  • Analysis of chromosomal polymorphism in barley (Hordeum vulgare L. ssp. vulgare) and between H. vulgare and H. chilense using three-color fluorescence in situ hybridization (FISH).

    abstract::The aim of the present work was to study chromosomal polymorphism within cultivated barley (Hordeum vulgare ssp. vulgare) using three-color fluorescence in situ hybridization (FISH). The physical distribution of the most frequently used, highly repetitive DNA sequences (GAA)7 specific for pericentromeric heterochromat...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/s13353-013-0167-8

    authors: Szakács É,Kruppa K,Molnár-Láng M

    更新日期:2013-11-01 00:00:00

  • Postulation of rust resistance genes in Nordic spring wheat genotypes and identification of widely effective sources of resistance against the Australian rust flora.

    abstract::Wild relatives, landraces and cultivars from different geographical regions have been demonstrated as the sources of genetic variation for resistance to rust diseases. This study involved assessment of diversity for resistance to three rust diseases among a set of Nordic spring wheat cultivars. These cultivars were te...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/s13353-016-0345-6

    authors: Randhawa M,Bansal U,Lillemo M,Miah H,Bariana H

    更新日期:2016-11-01 00:00:00

  • Resistance of spring wheat cultivars and lines to leaf rust.

    abstract::Spring wheat nursery accessions, including 18 spring wheat lines derived in CIMMYT, Mexico, and 12 spring wheat cultivars bred in Poland, along with cultivars Frontana and Sumai 3 as resistant controls, were examined for resistance to leaf rust under field conditions. Multipathotype tests with 16 different pathogen is...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:

    authors: Wiśniewska H,Stepień Ł,Kowalczyk K

    更新日期:2003-01-01 00:00:00

  • Induction and characterization of streptomycin-resistant mutants in Capsicum praetermissum.

    abstract::Streptomycin-resistant mutants were isolated from mutagenised cotyledon explants of Capsicum praetermissum Heiser & Smith. The explants were mutagenised with N-ethyl-N-nitrosourea, which resulted in a high frequency of streptomycin-resistant mutants (18.0%) and a low frequency of chlorophyll-deficient (albino) mutants...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:

    authors: Venkataiah P,Christopher T,Subhash K

    更新日期:2005-01-01 00:00:00

  • Post mortem identification of deoxyguanosine kinase (DGUOK) gene mutations combined with impaired glucose homeostasis and iron overload features in four infants with severe progressive liver failure.

    abstract::Deoxyguanosine kinase deficiency (dGK) is a frequent cause of the hepatocerebral form of mitochondrial depletion syndrome (MDS). A group of 28 infants with severe progressive liver failure of unknown cause was recruited for post mortem search for deoxyguanosine kinase (DGUOK) gene mutations. Four affected patients (14...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/s13353-010-0008-y

    authors: Pronicka E,Węglewska-Jurkiewicz A,Taybert J,Pronicki M,Szymańska-Dębińska T,Karkucińska-Więckowska A,Jakóbkiewicz-Banecka J,Kowalski P,Piekutowska-Abramczuk D,Pajdowska M,Socha P,Sykut-Cegielska J,Węgrzyn G

    更新日期:2011-02-01 00:00:00

  • Localisation of rDNA in the Lupinus genome during the cell cycle.

    abstract::Observations of a specific rDNA locus behaviour during the cell cycle were made by fluorescent in situ hybridisation (FISH) in 12 Lupinus species. Due to the pattern of chromatin de-condensation in that locus, the number of relevant sites in interphase nuclei was twice as high as the number of signals on metaphase chr...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:

    authors: Naganowska B,Zielińska A

    更新日期:2004-01-01 00:00:00

  • Quantitative trait loci with sex-specific effects for internal organs weights and hematocrit value in a broiler-layer cross.

    abstract::Rapid growth in broilers is associated with susceptibility to metabolic disorders such as pulmonary hypertension syndrome (ascites) and sudden death. This study describes a genome search for QTL associated with relative weight of cardio respiratory and metabolically important organs (heart, lungs, liver and gizzard), ...

    journal_title:Journal of applied genetics

    pub_type: 杂志文章

    doi:10.1007/s13353-015-0325-2

    authors: Moura AS,Ledur MC,Boschiero C,Nones K,Pinto LF,Jaenisch FR,Burt DW,Coutinho LL

    更新日期:2016-05-01 00:00:00