Firing-rate models capture essential response dynamics of LGN relay cells.

Abstract:

:Firing-rate models provide a practical tool for studying signal processing in the early visual system, permitting more thorough mathematical analysis than spike-based models. We show here that essential response properties of relay cells in the lateral geniculate nucleus (LGN) can be captured by surprisingly simple firing-rate models consisting of a low-pass filter and a nonlinear activation function. The starting point for our analysis are two spiking neuron models based on experimental data: a spike-response model fitted to data from macaque (Carandini et al. J. Vis., 20(14), 1-2011, 2007), and a model with conductance-based synapses and afterhyperpolarizing currents fitted to data from cat (Casti et al. J. Comput. Neurosci., 24(2), 235-252, 2008). We obtained the nonlinear activation function by stimulating the model neurons with stationary stochastic spike trains, while we characterized the linear filter by fitting a low-pass filter to responses to sinusoidally modulated stochastic spike trains. To account for the non-Poisson nature of retinal spike trains, we performed all analyses with spike trains with higher-order gamma statistics in addition to Poissonian spike trains. Interestingly, the properties of the low-pass filter depend only on the average input rate, but not on the modulation depth of sinusoidally modulated input. Thus, the response properties of our model are fully specified by just three parameters (low-frequency gain, cutoff frequency, and delay) for a given mean input rate and input regularity. This simple firing-rate model reproduces the response of spiking neurons to a step in input rate very well for Poissonian as well as for non-Poissonian input. We also found that the cutoff frequencies, and thus the filter time constants, of the rate-based model are unrelated to the membrane time constants of the underlying spiking models, in agreement with similar observations for simpler models.

journal_name

J Comput Neurosci

authors

Heiberg T,Kriener B,Tetzlaff T,Casti A,Einevoll GT,Plesser HE

doi

10.1007/s10827-013-0456-6

subject

Has Abstract

pub_date

2013-12-01 00:00:00

pages

359-75

issue

3

eissn

0929-5313

issn

1573-6873

journal_volume

35

pub_type

杂志文章
  • Flexibility and repeatability of finger movements during typing: analysis of multiple degrees of freedom.

    abstract::The kinematics of the hand and fingers were studied during various keystrokes in typing. These movements were defined by 17 degrees of freedom of motion, and methods were developed to identify simplifying strategies in the execution of the task. Most of the analysis was restricted to the 11 degrees of freedom of the f...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1023/a:1008812426305

    authors: Soechting JF,Flanders M

    更新日期:1997-01-01 00:00:00

  • From global to local: exploring the relationship between parameters and behaviors in models of electrical excitability.

    abstract::Models of electrical activity in excitable cells involve nonlinear interactions between many ionic currents. Changing parameters in these models can produce a variety of activity patterns with sometimes unexpected effects. Further more, introducing new currents will have different effects depending on the initial para...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-016-0600-1

    authors: Fletcher P,Bertram R,Tabak J

    更新日期:2016-06-01 00:00:00

  • Correction to: Psychophysical detection and learning in freely behaving rats: a probabilistic dynamical model for operant conditioning.

    abstract::The original version of this article unfortunately has some typographical errors in equations (5), (6), (7), (8), and (12). ...

    journal_title:Journal of computational neuroscience

    pub_type: 已发布勘误

    doi:10.1007/s10827-020-00759-0

    authors: Devecioğlu İ,Güçlü B

    更新日期:2020-08-01 00:00:00

  • System identification of Drosophila olfactory sensory neurons.

    abstract::The lack of a deeper understanding of how olfactory sensory neurons (OSNs) encode odors has hindered the progress in understanding the olfactory signal processing in higher brain centers. Here we employ methods of system identification to investigate the encoding of time-varying odor stimuli and their representation f...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-010-0265-0

    authors: Kim AJ,Lazar AA,Slutskiy YB

    更新日期:2011-02-01 00:00:00

  • A neuronal network for the logic of Limax learning.

    abstract::We construct a neuronal network to model the logic of associative conditioning as revealed in experimental results using the terrestrial mollusk Limax maximus. We show, in particular, how blocking to a previously conditioned stimulus in the presence of the unconditional stimulus, can emerge as a dynamical property of ...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-006-8097-7

    authors: Goel P,Gelperin A

    更新日期:2006-12-01 00:00:00

  • A probabilistic method for determining cortical dynamics during seizures.

    abstract::This work presents a probabilistic method for inferring the parameter ranges in a biologically relevant mathematical model of the cortex most likely to be producing seizures observed in an electrocorticogram (ECoG) signal from a human subject. Additionally, this method produces a probabilistic pathway of the temporal ...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-015-0554-8

    authors: Dadok VM,Kirsch HE,Sleigh JW,Lopour BA,Szeri AJ

    更新日期:2015-06-01 00:00:00

  • Visual responses of crayfish ocular motoneurons: an information theoretical analysis.

    abstract::Motoneuron responses were elicited by global visual motion and stepwise displacements of an illuminated stripe. Stimulus protocols were identical to those used in previous behavioral studies of compensatory eyestalk reflexes. The firing rates and directional selectivity of the motoneuron responses were measured with r...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1023/a:1025873027017

    authors: Miller CS,Johnson DH,Schroeter JP,Myint L,Glantz RM

    更新日期:2003-09-01 00:00:00

  • Simulation of gamma rhythms in networks of interneurons and pyramidal cells.

    abstract::Networks of hippocampal interneurons, with pyramidal neurons pharmacologically disconnected, can generate gamma-frequency (20 Hz and above) oscillations. Experiments and models have shown how the network frequency depends on excitation of the interneurons, and on the parameters of GABAA-mediated IPSCs between the inte...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1023/a:1008839312043

    authors: Traub RD,Jefferys JG,Whittington MA

    更新日期:1997-04-01 00:00:00

  • Lyapunov exponents computation for hybrid neurons.

    abstract::Lyapunov exponents are a basic and powerful tool to characterise the long-term behaviour of dynamical systems. The computation of Lyapunov exponents for continuous time dynamical systems is straightforward whenever they are ruled by vector fields that are sufficiently smooth to admit a variational model. Hybrid neuron...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-013-0448-6

    authors: Bizzarri F,Brambilla A,Gajani GS

    更新日期:2013-10-01 00:00:00

  • Dynamics of recurrent neural networks with delayed unreliable synapses: metastable clustering.

    abstract::The influence of unreliable synapses on the dynamic properties of a neural network is investigated for a homogeneous integrate-and-fire network with delayed inhibitory synapses. Numerical and analytical calculations show that the network relaxes to a state with dynamic clusters of identical size which permanently exch...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-008-0127-1

    authors: Friedrich J,Kinzel W

    更新日期:2009-08-01 00:00:00

  • Impact of network topology on inference of synaptic connectivity from multi-neuronal spike data simulated by a large-scale cortical network model.

    abstract::Many mechanisms of neural processing rely critically upon the synaptic connectivity between neurons. As our ability to simultaneously record from large populations of neurons expands, the ability to infer network connectivity from this data has become a major goal of computational neuroscience. To address this issue, ...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-013-0443-y

    authors: Kobayashi R,Kitano K

    更新日期:2013-08-01 00:00:00

  • Macaque monkeys show reversed ocular following responses to two-frame-motion stimulus presented with inter-stimulus intervals.

    abstract::When two-frame apparent motion stimuli are presented with an appropriate inter-stimulus interval (ISI), motion is perceived in the direction opposite to the actual image shift. Herein, we measured a simple eye movement, ocular following responses (OFRs), in macaque monkeys to examine the ISI reversal effect on oculomo...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-020-00756-3

    authors: Takemura A,Matsumoto J,Hashimoto R,Kawano K,Miura K

    更新日期:2020-07-17 00:00:00

  • A common goodness-of-fit framework for neural population models using marked point process time-rescaling.

    abstract::A critical component of any statistical modeling procedure is the ability to assess the goodness-of-fit between a model and observed data. For spike train models of individual neurons, many goodness-of-fit measures rely on the time-rescaling theorem and assess model quality using rescaled spike times. Recently, there ...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-018-0698-4

    authors: Tao L,Weber KE,Arai K,Eden UT

    更新日期:2018-10-01 00:00:00

  • Modeling mesoscopic cortical dynamics using a mean-field model of conductance-based networks of adaptive exponential integrate-and-fire neurons.

    abstract::Voltage-sensitive dye imaging (VSDi) has revealed fundamental properties of neocortical processing at macroscopic scales. Since for each pixel VSDi signals report the average membrane potential over hundreds of neurons, it seems natural to use a mean-field formalism to model such signals. Here, we present a mean-field...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-017-0668-2

    authors: Zerlaut Y,Chemla S,Chavane F,Destexhe A

    更新日期:2018-02-01 00:00:00

  • Dynamics of a neuron-glia system: the occurrence of seizures and the influence of electroconvulsive stimuli : A mathematical and numerical study.

    abstract::In this paper, we investigate the dynamics of a neuron-glia cell system and the underlying mechanism for the occurrence of seizures. For our mathematical and numerical investigation of the cell model we will use bifurcation analysis and some computational methods. It turns out that an increase of the potassium concent...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-020-00746-5

    authors: Erhardt AH,Mardal KA,Schreiner JE

    更新日期:2020-05-01 00:00:00

  • Encoding the fine-structured mechanism of action potential dynamics with qualitative motifs.

    abstract::This work presents a neuroinformatic method for deriving mechanistic descriptions of fine-structured neural activity. This is a new development in the computer-assisted analysis of dynamics in conductance-based models, which is illustrated using single compartment models of an action potential. A sequence of abstract,...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-010-0267-y

    authors: Clewley R

    更新日期:2011-04-01 00:00:00

  • Reliability of signal transmission in stochastic nerve axon equations.

    abstract::We introduce a method for computing probabilities for spontaneous activity and propagation failure of the action potential in spatially extended, conductance-based neuronal models subject to noise, based on statistical properties of the membrane potential. We compare different estimators with respect to the quality of...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-015-0586-0

    authors: Sauer M,Stannat W

    更新日期:2016-02-01 00:00:00

  • Propagation of photon noise and information transfer in visual motion detection.

    abstract::The extraction of the direction of motion from the time varying retinal images is one of the most basic tasks any visual system is confronted with. However, retinal images are severely corrupted by photon noise, in particular at low light levels, thus limiting the performance of motion detection mechanisms of what sor...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-005-5906-3

    authors: Shi L,Borst A

    更新日期:2006-04-01 00:00:00

  • Representation of visual space in area 7a neurons using the center of mass equation.

    abstract::The firing rate of neurons in parietal area 7a of the behaving Rhesus monkey with its head fixed incorporates both visual and eye position information. This neural tuning is not in an ego-centered coordinate space. This physiological result was unexpected as behavioral deficits following parietal damage in human and m...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1023/a:1008844027878

    authors: Siegel RM

    更新日期:1998-12-01 00:00:00

  • Replicability or reproducibility? On the replication crisis in computational neuroscience and sharing only relevant detail.

    abstract::Replicability and reproducibility of computational models has been somewhat understudied by "the replication movement." In this paper, we draw on methodological studies into the replicability of psychological experiments and on the mechanistic account of explanation to analyze the functions of model replications and m...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-018-0702-z

    authors: Miłkowski M,Hensel WM,Hohol M

    更新日期:2018-12-01 00:00:00

  • The intrinsic electrophysiological characteristics of fly lobula plate tangential cells: II. Active membrane properties.

    abstract::The voltage-gated currents in the fly lobula plate tangential cells were examined using the switched electrode voltage clamp technique. In CH cells, two currents were identified (Figs. 1, 2): a slow calcium inward current and a delayed rectifying, noninactivating potassium outward current. HS and VS cells appear to po...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1023/a:1008804117334

    authors: Haag J,Theunissen F,Borst A

    更新日期:1997-11-01 00:00:00

  • Twenty years of ModelDB and beyond: building essential modeling tools for the future of neuroscience.

    abstract::Neuron modeling may be said to have originated with the Hodgkin and Huxley action potential model in 1952 and Rall's models of integrative activity of dendrites in 1964. Over the ensuing decades, these approaches have led to a massive development of increasingly accurate and complex data-based models of neurons and ne...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章,评审

    doi:10.1007/s10827-016-0623-7

    authors: McDougal RA,Morse TM,Carnevale T,Marenco L,Wang R,Migliore M,Miller PL,Shepherd GM,Hines ML

    更新日期:2017-02-01 00:00:00

  • Role of hyperpolarization-activated conductances in the lateral superior olive: a modeling study.

    abstract::This modeling study examines the possible functional roles of two hyperpolarization-activated conductances in lateral superior olive (LSO) principal neurons. Inputs of these LSO neurons are transformed into an output, which provides a firing-rate code for a certain interaural sound intensity difference (IID) range. Re...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-005-5637-5

    authors: Szalisznyó K

    更新日期:2006-04-01 00:00:00

  • Two-cell to N-cell heterogeneous, inhibitory networks: precise linking of multistable and coherent properties.

    abstract::Inhibitory networks are now recognized as being the controllers of several brain rhythms. However, experimental work with inhibitory cells is technically difficult not only because of their smaller percentage of the neuronal population, but also because of their diverse properties. As such, inhibitory network models w...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-005-0331-1

    authors: Skinner FK,Bazzazi H,Campbell SA

    更新日期:2005-06-01 00:00:00

  • On the dynamics of electrically-coupled neurons with inhibitory synapses.

    abstract::We study the dynamics and bifurcations of noise-free neurons coupled by gap junctions and inhibitory synapses, using both delayed delta functions and alpha functions to model the latter. We focus on the case of two cells, as in the studies of Chow and Kopell (2000) and Lewis and Rinzel (2003), but also show that stabl...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-006-9676-3

    authors: Gao J,Holmes P

    更新日期:2007-02-01 00:00:00

  • The response of a classical Hodgkin-Huxley neuron to an inhibitory input pulse.

    abstract::A population of uncoupled neurons can often be brought close to synchrony by a single strong inhibitory input pulse affecting all neurons equally. This mechanism is thought to underlie some brain rhythms, in particular gamma frequency (30-80 Hz) oscillations in the hippocampus and neocortex. Here we show that synchron...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-010-0233-8

    authors: Börgers C,Krupa M,Gielen S

    更新日期:2010-06-01 00:00:00

  • Exact analytical results for integrate-and-fire neurons driven by excitatory shot noise.

    abstract::A neuron receives input from other neurons via electrical pulses, so-called spikes. The pulse-like nature of the input is frequently neglected in analytical studies; instead, the input is usually approximated to be Gaussian. Recent experimental studies have shown, however, that an assumption underlying this approximat...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-017-0649-5

    authors: Droste F,Lindner B

    更新日期:2017-08-01 00:00:00

  • Spatiotemporal model of tripartite synapse with perinodal astrocytic process.

    abstract::Information transfer may not be limited only to synapses. Therefore, the processes and dynamics of biological neuron-astrocyte coupling and intercellular interaction within this domain are worth investigating. Existing models of tripartite synapse consider an astrocyte as a point process. Here, we extended the tripart...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-019-00734-4

    authors: Lorenzo J,Vuillaume R,Binczak S,Jacquir S

    更新日期:2020-02-01 00:00:00

  • Slowdown of BCM plasticity with many synapses.

    abstract::During neural development sensory stimulation induces long-term changes in the receptive field of the neurons that encode the stimuli. The Bienenstock-Cooper-Munro (BCM) model was introduced to model and analyze this process computationally, and it remains one of the major models of unsupervised plasticity to this day...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-019-00715-7

    authors: Froc M,van Rossum MCW

    更新日期:2019-04-01 00:00:00

  • Nonlinear time series analysis of jerk congenital nystagmus.

    abstract::Nonlinear dynamics provides a complementary framework to control theory for the quantitative analysis of the oculomotor control system. This paper presents a number of findings relating to the aetiology and mechanics of the pathological ocular oscillation jerk congenital nystagmus (jerk CN). A range of time series ana...

    journal_title:Journal of computational neuroscience

    pub_type: 杂志文章

    doi:10.1007/s10827-006-7816-4

    authors: Akman OE,Broomhead DS,Clement RA,Abadi RV

    更新日期:2006-10-01 00:00:00