Abstract：
:Recent years have witnessed the genomic decoding of a wide range of photosynthetic organisms from the model plant Arabidopsis thaliana and the complex genomes of important crop species to single-celled marine phytoplankton. The comparative sequencing of green, red and brown algae has provided considerable insight into a number of important questions concerning their evolution, physiology and metabolism. The combinatorial application of metabolomics has further deepened our understanding both of the function of individual genes and of metabolic processes. Here we discuss the power of utilising metabolomics in conjunction with sequencing data to gain greater insight into the metabolic hierarchies underpinning the function of individual organisms, using unicellular marine diatoms as a case study to exemplify the advantages of this approach.
journal_name
Trends Plant Scijournal_title
Trends in plant scienceauthors
Fernie AR,Obata T,Allen AE,Araújo WL,Bowler Cdoi
10.1016/j.tplants.2012.02.005subject
Has Abstractpub_date
2012-07-01 00:00:00pages
395-403issue
7eissn
1360-1385issn
1878-4372pii
S1360-1385(12)00043-Xjournal_volume
17pub_type
杂志文章,评审abstract：:Substantial amounts of nutrients are lost from soils via leaching and as gaseous emissions. These losses can be environmentally damaging and expensive in terms of lost agricultural production. Plants have evolved many traits to optimize nutrient acquisition, including the formation of arbuscular mycorrhizas (AM), asso...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2015.03.004
更新日期：2015-05-01 00:00:00
abstract：:The plant holobiont extends the plant's capacity for nutrient acquisition and stress protection. Recent studies show that under biotic stress plants can promote the acquisition of certain beneficial bacteria to their rhizosphere. Active emission of volatile organic compounds (VOCs) is a newly identified mechanism util...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2019.01.008
更新日期：2019-03-01 00:00:00
abstract：:Arbuscular mycorrhizal fungi colonize the root systems of most land plants and modulate plant growth by enhancing the availability of nutrients, mainly phosphorus, for plant nutrition. Recently identified genes encoding mycorrhiza-specific plant phosphate transporters have enabled fundamental problems in arbuscular my...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2004.12.003
更新日期：2005-01-01 00:00:00
abstract：:Ultraviolet-B (UV-B) light suppresses hypocotyl elongation. Although UV-B photo-perception mechanisms have been well investigated, the signaling events from UV-B photoreceptor to downstream transcription are largely unknown. Two recent papers illustrate that the UV-B photoreceptor directly inhibits its interacting tra...
journal_title：Trends in plant science
pub_type： 评论,杂志文章
doi：10.1016/j.tplants.2018.03.002
更新日期：2018-04-01 00:00:00
abstract：:microRNAs (miRNAs) are short noncoding regulatory genes that perform important roles in plant development and physiology. With the increasing power of next generation sequencing technologies and the development of bioinformatic tools, there has been a dramatic increase in the number of studies surveying the miRNAomes ...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2013.11.008
更新日期：2014-03-01 00:00:00
abstract：:Reactive oxygen species (ROS)- and calcium- dependent signaling pathways play well-established roles during plant innate immunity. Chloroplasts host major biosynthetic pathways and have central roles in energy production, redox homeostasis, and retrograde signaling. However, the organelle's importance in immunity has ...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2014.10.002
更新日期：2015-01-01 00:00:00
abstract：:With increasing calls for improving terrestrial carbon sequestration and sustainable water use, scientists are faced with the challenge of predicting changes in carbon-water relations from organisms to landscapes. We propose an integrative framework to help in answering basic and applied questions pertaining to couple...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2020.02.007
更新日期：2020-07-01 00:00:00
abstract：:Chloroplasts have a dynamic protein environment and, although proteases are presumably major contributors, the identities of these crucial regulatory proteins have only recently been revealed. There are defined proteases within each of the major chloroplast compartments: the ATP-dependent Clp and FtsH proteases in the...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/s1360-1385(02)02326-9
更新日期：2002-10-01 00:00:00
abstract：:Plants downregulate their defences against insect herbivores upon impending competition for light. This has long been considered a resource trade-off, but recent advances in plant physiology and ecology suggest this mechanism is more complex. Here we propose that to understand why plants regulate and balance growth an...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2016.12.006
更新日期：2017-04-01 00:00:00
abstract：:Mutator (Mu) element insertion has become the main way of mutating and cloning maize genes, but we are only beginning to understand how this transposon system is regulated. Mu elements are under tight developmental control and are subject to a form of epigenetic regulation that shares some features with the regulation...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/s1360-1385(02)02347-6
更新日期：2002-11-01 00:00:00
abstract：:Biomineralization is widespread in the plant kingdom. The most common types of biominerals in plants are calcium oxalate crystals, calcium carbonate, and silica. Functions of biominerals may depend on their shape, size, abundance, placement, and chemical composition. In this review we highlight advances in understandi...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2013.11.002
更新日期：2014-03-01 00:00:00
abstract：:Current agricultural practice depends on a wide use of pesticides, bactericides, and fungicides. Increased demand for organic products indicates consumer preference for reduced chemical use. Therefore, there is a need to develop novel sustainable strategies for crop protection and enhancement that do not rely on genet...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2015.01.004
更新日期：2015-04-01 00:00:00
abstract：:Higher plants are constructed of three organs--the stem, the root and the leaf. The stem and the root have two axes, apical-basal and central-peripheral, which cross orthogonally. Leaves develop from the shoot apical meristem as lateral organs that have three different axes, apical-basal, adaxial-abaxial and right-lef...
journal_title：Trends in plant science
pub_type： 新闻
doi：10.1016/s1360-1385(01)02155-0
更新日期：2001-12-01 00:00:00
abstract：:Aquaporins are water channel proteins of vacuolar and plasma membranes. When opened they facilitate the passive movement of water molecules down a water potential gradient. In Arabidopsis, 30 genes have been found that code for aquaporin homologues. Some of these genes code for highly abundant constitutively expressed...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/s1360-1385(99)01438-7
更新日期：1999-08-01 00:00:00
abstract：:During the past decade there has been rapidly increasing interest in the role of plant volatiles in insect-plant interactions and the induction of plant defence systems by both pathogens and herbivores. Scientists are striving to link the proximate studies elucidating pathways and genes with the ultimate adaptive stud...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/s1360-1385(01)01899-4
更新日期：2001-04-01 00:00:00
abstract：:A limiting factor for photosynthetic organisms is their light-harvesting efficiency, that is the efficiency of their conversion of light energy to chemical energy. Small modifications or variations of chlorophylls allow photosynthetic organisms to harvest sunlight at different wavelengths. Oxygenic photosynthetic orga...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2011.03.011
更新日期：2011-08-01 00:00:00
abstract：:Dimensionless numbers are ubiquitous in the physical sciences because they provide insight into physical processes, organize large quantities of data, facilitate 'scale analysis' and establish 'similarity'. Here I explore the use of dimensionless numbers in plant biology, focusing on the expansive growth rate of plant...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2017.09.020
更新日期：2018-01-01 00:00:00
abstract：:CONSTANS (CO) is a master regulator of flowering time, although the mechanisms underlying its role as a transcriptional regulator are not well understood. The DNA-binding domain of CO shares homology with that of NUCLEAR FACTOR YA (NF-YA), a subunit of the CCAAT-binding trimer NF-Y. Recent publications indicate that C...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2017.12.005
更新日期：2018-04-01 00:00:00
abstract：:Plants form diverse symbioses with nitrogen-fixing bacteria to gain access to ammonium, a product of the prokaryote-exclusive enzyme nitrogenase. Improving the symbiotic effectiveness of crop plants like maize, wheat or rice is a highly topical challenge and could help reduce the need for energy-intense nitrogen ferti...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2008.11.009
更新日期：2009-02-01 00:00:00
abstract：:It is well documented that ancient sickle harvesting led to tough rachises, but the other seed dispersal properties in crop progenitors are rarely discussed. The first steps toward domestication are evolutionary responses for the recruitment of humans as dispersers. Seed dispersal-based mutualism evolved from heavy hu...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2020.01.005
更新日期：2020-04-01 00:00:00
abstract：:Seed and fruit set are established during and soon after fertilization and determine seed and fruit number, their final size and, hence, yield potential. These processes are highly sensitive to biotic and abiotic stresses, which often lead to seed and fruit abortion. Here, we review the regulation of assimilate partit...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2012.06.005
更新日期：2012-11-01 00:00:00
abstract：:Many agronomically important traits are governed by several genes known as quantitative trait loci (QTLs). The identification of important, QTL-controlled agricultural traits has been difficult because of their complex inheritance; however, completion of the rice genomic sequence has facilitated the cloning of QTLs an...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2006.05.008
更新日期：2006-07-01 00:00:00
abstract：:Seeds from various angiosperm species produce polysaccharide mucilage facilitating germination and, therefore, conferring major evolutionary advantages. The seed epidermal mucilage secretory cells (MSCs) undergo numerous tightly controlled changes of their extracellular matrixes (ECMs) throughout seed development. Rec...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2015.04.008
更新日期：2015-08-01 00:00:00
abstract：:Recent studies indicate that a multitude of microbial processes are involved in nitric oxide production and consumptions in the pedosphere. Due to its dual function as a toxic metabolite and signaling compound, we speculate that this pedospheric nitric oxide of microbial origin can significantly interact with mycorrhi...
journal_title：Trends in plant science
pub_type： 杂志文章
doi：10.1016/j.tplants.2020.11.007
更新日期：2021-02-01 00:00:00
abstract：:Eating plant-derived compounds can lead to a longer and healthier life and also benefits the environment. Innovation in the fresh food sector, as well as new cultivars, can improve consumption of fruit and vegetables, with MYB transcription factors being a target to drive this novelty. Plant MYB transcription factors ...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2018.06.001
更新日期：2018-08-01 00:00:00
abstract：:Plant nutrient acquisition is tightly regulated by resource availability and metabolic needs, implying the existence of communication between roots and shoots to ensure their integration at the whole-plant level. Here, we focus on systemic signaling pathways controlling nitrogen (N) nutrition, achieved both by the roo...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2020.11.009
更新日期：2020-12-23 00:00:00
abstract：:Faced with an accelerating rate of environmental change and the associated need for a more sustainable, low-input agriculture, the urgent new challenge for crop science is to find ways to introduce greater diversity to cropping systems. However, there is a dearth of generic formalism in programs seeking to diversify c...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2015.07.007
更新日期：2015-10-01 00:00:00
abstract：:The plastid originated 1.5 billion years ago through a primary endosymbiosis involving a heterotrophic eukaryote and an ancient cyanobacterium. Phylogenetic and biochemical evidence suggests that the incipient endosymbiont interacted with an obligate intracellular chlamydial pathogen that housed it in an inclusion. Th...
journal_title：Trends in plant science
pub_type： 杂志文章,评审
doi：10.1016/j.tplants.2016.12.007
更新日期：2017-04-01 00:00:00
abstract：:A recent study reports partner manipulation for an interaction that was considered a reward-for-defence mutualism. Secretions of lycaenid caterpillars altered ant locomotion and aggressiveness, likely by manipulating dopaminergic signalling. This study opens the question whether such manipulation is common and whether...
journal_title：Trends in plant science
pub_type： 评论,杂志文章
doi：10.1016/j.tplants.2015.08.001
更新日期：2015-09-01 00:00:00
abstract：:Polyamines, such as spermine, spermidine and putrescine, are ubiquitous polycationic compounds that are produced by almost all living organisms, including plants, animals, fungi and bacteria. Polyamines are multifunctional and interact with polyanionic biomolecules such as DNA or protein. However, despite their potent...
journal_title：Trends in plant science
pub_type： 评论,杂志文章
doi：10.1016/j.tplants.2006.09.009
更新日期：2006-11-01 00:00:00
