Genomic predictors of interindividual differences in response to DNA damaging agents.

Abstract:

:Human lymphoblastoid cells derived from different healthy individuals display considerable variation in their transcription profiles. Here we show that such variation in gene expression underlies interindividual susceptibility to DNA damaging agents. The results demonstrate the massive differences in sensitivity across a diverse cell line panel exposed to an alkylating agent. Computational models identified 48 genes with basal expression that predicts susceptibility with 94% accuracy. Modulating transcript levels for two member genes, MYH and C21ORF56, confirmed that their expression does indeed influence alkylation sensitivity. Many proteins encoded by these genes are interconnected in cellular networks related to human cancer and tumorigenesis.

journal_name

Genes Dev

journal_title

Genes & development

authors

Fry RC,Svensson JP,Valiathan C,Wang E,Hogan BJ,Bhattacharya S,Bugni JM,Whittaker CA,Samson LD

doi

10.1101/gad.1688508

subject

Has Abstract

pub_date

2008-10-01 00:00:00

pages

2621-6

issue

19

eissn

0890-9369

issn

1549-5477

pii

gad.1688508

journal_volume

22

pub_type

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