Evaluation of polymorphic splicing in the mechanism of the association of the insulin gene with diabetes.

Abstract:

:The association of type 1 diabetes with the insulin gene (IDDM2 locus) has been mapped to a short haplotype encompassing two single nucleotide polymorphisms (SNPs) in perfect linkage disequilibrium (r(2) = 1) with each other and with the two allele classes at the variable number of tandem repeats (VNTR) polymorphism upstream of the transcription site. Although it is believed that the genetic effect is mediated through transcriptional effects of the VNTR, an alternative mechanism has been recently proposed: In transfected cells, the common A allele at one of the SNPs (-23A-->T, in relation to the translation-initiation codon) weakens the splicing of intron 1, resulting in a minor ( approximately 15% of total RNA) transcript with a longer 5' untranslated region and sixfold enhanced translational efficiency. The purpose of our study was to confirm these findings in RNA from normal human pancreas and thymus. We report that pancreas does contain the alternative transcript in an allele-dependent manner but at a very low proportion (<5% of total INS mRNA). We believe that this level would have a minor, if any, biological effect involved in the mechanism of the IDDM2 locus.

journal_name

Diabetes

journal_title

Diabetes

authors

Marchand L,Polychronakos C

doi

10.2337/db06-0402

subject

Has Abstract

pub_date

2007-03-01 00:00:00

pages

709-13

issue

3

eissn

0012-1797

issn

1939-327X

pii

56/3/709

journal_volume

56

pub_type

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