Direct sugar binding to LacY measured by resonance energy transfer.

Abstract:

:Trp151 in the lactose permease of Escherichia coli (LacY) is an important component of the sugar-binding site and the only Trp residue out of six that is in close proximity to the galactopyranoside in the structure (1PV7). The short distance between Trp151 and the sugar is favorable for Förster resonance energy transfer (FRET) to nitrophenyl or dansyl derivatives with the fluorophore at the anomeric position of galactose. Modeling of 4-nitrophenyl-alpha-d-galactopyranoside (alpha-NPG) in the binding-site of LacY places the nitrophenyl moiety about 12 A away from Trp151, a distance commensurate with the Förster distance for a Trp-nitrobenzoyl pair. We demonstrate here that alpha-NPG binding to LacY containing all six native Trp residues causes galactopyranoside-specific FRET from Trp151. Moreover, binding of alpha-NPG is sufficiently slow to resolve time-dependent fluorescence changes by stopped-flow. The rate of change in Trp --> alpha-NPG FRET is linearly dependent upon sugar concentration, which allows estimation of kinetic parameters for binding. Furthermore, 2-(4'-maleimidylanilino)naphthalene-6-sulfonic acid (MIANS) covalently attached to the cytoplasmic end of helix X is sensitive to sugar binding, reflecting a ligand-induced conformational change. Stopped-flow kinetics of Trp --> alpha-NPG FRET and sugar-induced changes in MIANS fluorescence in the same protein reveal a two-step process: a relatively rapid binding step detected by Trp151 --> alpha-NPG FRET followed by a slower conformational change detected by a change in MIANS fluorescence.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Smirnova IN,Kasho VN,Kaback HR

doi

10.1021/bi061632m

subject

Has Abstract

pub_date

2006-12-26 00:00:00

pages

15279-87

issue

51

eissn

0006-2960

issn

1520-4995

journal_volume

45

pub_type

杂志文章
  • The nuclear transport machinery recognizes nucleoplasmin-histone complexes.

    abstract::The nuclear transport of the chromatin remodeling protein nucleoplasmin and chromatin building histones is mediated by importins. Nucleoplasmin (NP) contains a classical bipartite nuclear localization signal (NLS) that is recognized by the importin α/β heterodimer, while histones present multiple NLS-like motifs that ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi2008867

    authors: Arregi I,Falces J,Bañuelos S,Urbaneja MA,Taneva SG

    更新日期:2011-08-23 00:00:00

  • Subcloning, expression, and purification of the enterobactin biosynthetic enzyme 2,3-dihydroxybenzoate-AMP ligase: demonstration of enzyme-bound (2,3-dihydroxybenzoyl)adenylate product.

    abstract::The gene coding for the enzyme 2,3-dihydroxybenzoate-AMP ligase (2,3DHB-AMP ligase), responsible for activating 2,3-dihydroxybenzoic acid in the biosynthesis of the siderophore enterobactin, has been subcloned into the multicopy plasmid pKK223-3 and overproduced in a strain of Escherichia coli. The protein is an alpha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00443a008

    authors: Rusnak F,Faraci WS,Walsh CT

    更新日期:1989-08-22 00:00:00

  • SERPINB12 Is a Slow-Binding Inhibitor of Granzyme A and Hepsin.

    abstract::The clade B/intracellular serpins protect cells from peptidase-mediated injury by forming covalent complexes with their targets. SERPINB12 is expressed in most tissues, especially at cellular interfaces with the external environment. This wide tissue distribution pattern is similar to that of granzyme A (GZMA). Becaus...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.5b01042

    authors: Niehaus JZ,Miedel MT,Good M,Wyatt AN,Pak SC,Silverman GA,Luke CJ

    更新日期:2015-11-17 00:00:00

  • Thermodynamic analysis of unfolding and dissociation in lactose repressor protein.

    abstract::Lactose repressor protein, regulator of lac enzyme expression in Escherichia coli, maintains its structure and function at extremely low protein concentrations (<10(-)12 M). To examine the unfolding and dissociation of this tetrameric protein, structural transitions in the presence of varying concentrations of urea we...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9900727

    authors: Barry JK,Matthews KS

    更新日期:1999-05-18 00:00:00

  • Kinetics of calcium uptake by isolated sarcoplasmic reticulum vesicles using flash photolysis of caged adenosine 5'-triphosphate.

    abstract::The kinetics of ATP-induced Ca2+ uptake by vesicular dispersions of sarcoplasmic reticulum were determined with a time resolution of about 10 ms, depending on the temperature. Ca2+ uptake was initiated by the addition of ATP through the flash photolysis of P3-1-(2-nitrophenyl)-ethyl adenosine 5'-triphosphate utilizing...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00292a003

    authors: Pierce DH,Scarpa A,Topp MR,Blasie JK

    更新日期:1983-11-08 00:00:00

  • The application of 0.1 M quadrol to the microsequence of proteins and the sequence of tryptic peptides.

    abstract::In an effort to extend automated Edman degradation to nanomole quantities of protein, the method of sequenator analysis described by Edman and Begg (Edman, P., and Begg, G. (1967), Eur. J. Biochem. 1, 80) was modified to permit long degradations in the absence of carrier proteins. By using an aqueous 0.1 M Quadrol pro...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00684a036

    authors: Brauer AW,Margolies MN,Haber E

    更新日期:1975-07-01 00:00:00

  • GliP, a multimodular nonribosomal peptide synthetase in Aspergillus fumigatus, makes the diketopiperazine scaffold of gliotoxin.

    abstract::The fungal metabolite gliotoxin has a redox-active disulfide bridge spanning carbons 3 and 6 of a diketopiperazine (DKP) scaffold. The proposed DKP synthetase, GliP, from Aspergillus fumigatus Af293, is a three module (A1-T1-C1-A2-T2-C2-T3) 236 kDa protein that can be overproduced in soluble form in Escherichia coli. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi061845b

    authors: Balibar CJ,Walsh CT

    更新日期:2006-12-19 00:00:00

  • Investigation of phosphatidylethanolamine bilayers by deuterium and phosphorus-31 nuclear magnetic resonance.

    abstract::The motion of the ethanolamine head group in unsonicated lipid bilayers above and below the phase transition is studied by means of deuterium and phosphorus magnetic resonance. For this purpose, dipalmitoyl-3-sn-phosphatidylethanolamine is selectively deuterated at the two ethanolamine carbon atoms. The deuterium quad...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00669a001

    authors: Seelig J,Gally H

    更新日期:1976-11-30 00:00:00

  • Kinetic analysis of heparin and glucan sulfates binding to P-selectin and its impact on the general understanding of selectin inhibition.

    abstract::P-Selectin, expressed on activated endothelial cells and platelets, is a high kinetic adhesion receptor involved in leukocyte rolling of the inflammatory response, or in tumor cell binding in the course of metastasis. Thus, P-selectin inhibition is a promising therapeutic target. The anti-inflammatory and anti-metasta...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi602347g

    authors: Simonis D,Fritzsche J,Alban S,Bendas G

    更新日期:2007-05-22 00:00:00

  • Methyl-Based NMR Spectroscopy Methods for Uncovering Structural Dynamics in Large Proteins and Protein Complexes.

    abstract::NMR spectroscopy is particularly adept at site-specifically monitoring dynamic processes in proteins, such as protein folding, domain movements, ligand binding, and side-chain rotations. By coupling the favorable spectroscopic properties of highly dynamic side-chain methyl groups with transverse-relaxation-optimized s...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/acs.biochem.8b00953

    authors: Boswell ZK,Latham MP

    更新日期:2019-01-22 00:00:00

  • Procatalytic ligand strain. Ionization and perturbation of 8-nitroxanthine at the urate oxidase active site.

    abstract::The binding of the inhibitor 8-nitroxanthine to urate oxidase has been investigated by Raman and UV-visible absorption spectroscopy. The absorption maximum of 8-nitroxanthine shifts from 380 to 400 nm upon binding to the enzyme, demonstrating that the electronic structure of the ligand is perturbed. It has been propos...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0507837

    authors: Doll C,Bell AF,Power N,Tonge PJ,Tipton PA

    更新日期:2005-08-30 00:00:00

  • Inhibition of T cell signaling by immunophilin-ligand complexes correlates with loss of calcineurin phosphatase activity.

    abstract::Calcineurin, a Ca2+, calmodulin-dependent protein phosphatase, was recently found to bind with high affinity to two different immunosuppressant binding proteins (immunophilins) with absolute dependence on the presence of the immunosuppressants FK506 or cyclosporin A (CsA) [Liu et al. (1991) Cell 66, 807-815]. The bind...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00131a002

    authors: Liu J,Albers MW,Wandless TJ,Luan S,Alberg DG,Belshaw PJ,Cohen P,MacKintosh C,Klee CB,Schreiber SL

    更新日期:1992-04-28 00:00:00

  • Unusual Ca(2+)-calmodulin binding interactions of the microtubule-associated protein F-STOP.

    abstract::F-STOP is a microtubule-associated protein that stabilizes microtubules in a calmodulin (CaM)-dependent manner. All members of the stable tubule only polypeptide (STOP) family have a central domain that contains nearly identical multiple repeats, and a CaM binding motif is present in multiple copies within this domain...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi034746w

    authors: Bouvier D,Vanhaverbeke C,Simorre JP,Arlaud GJ,Bally I,Forge V,Margolis RL,Gans P,Kleman JP

    更新日期:2003-10-07 00:00:00

  • Basic proline-rich proteins from human parotid saliva: complete covalent structures of proteins IB-1 and IB-6.

    abstract::The complete amino acid sequences of two basic proline-rich proteins, IB-1 and IB-6, from human parotid saliva have been determined. Fragments for sequence analysis were obtained by enzymatic digestions. The proteins have molecular weights of 9571 (IB-1) and 11,530 (IB-6) and contain 34 and 39 mol % proline, respectiv...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00357a013

    authors: Kauffman D,Hofmann T,Bennick A,Keller P

    更新日期:1986-05-06 00:00:00

  • Biotin synthase is a pyridoxal phosphate-dependent cysteine desulfurase.

    abstract::Biotin synthase (BioB) is an iron-sulfur dimeric enzyme which catalyzes the last step in biotin synthesis. The reaction consists of the introduction of a sulfur atom into dethiobiotin. It is shown here that BioB displays a significant cysteine desulfurase activity, providing it with the ability to mobilize sulfur from...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0122011

    authors: Ollagnier-De-Choudens S,Mulliez E,Hewitson KS,Fontecave M

    更新日期:2002-07-23 00:00:00

  • Amino acid structures of multiple forms of amyloid-related serum protein SAA from a single individual.

    abstract::Multiple forms of the acute-phase serum protein SAA were isolated from the lipoprotein fraction of plasma from a single individual. These protein forms were purified by size-exclusion, ion-exchange, and reverse-phase high-pressure liquid chromatography, and then the tryptic peptides were subjected to amino acid sequen...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00405a044

    authors: Dwulet FE,Wallace DK,Benson MD

    更新日期:1988-03-08 00:00:00

  • Kinetic evidence for folding and unfolding intermediates in staphylococcal nuclease.

    abstract::The complex kinetic behavior commonly observed in protein folding studies suggests that a heterogeneous population of molecules exists in solution and that a number of discrete steps are involved in the conversion of unfolded molecules to the fully native form. A central issue in protein folding is whether any of thes...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9700476

    authors: Walkenhorst WF,Green SM,Roder H

    更新日期:1997-05-13 00:00:00

  • Effect of chloride binding on the thermal trimer-monomer conversion of halorhodopsin in the solubilized system.

    abstract::Halorhodopsin from Natronomonas pharaonis (NpHR) acts an inward-directed, light-driven chloride pump and forms a homotrimer. To evaluate effect of trimeric assembly, that is, intermolecular interaction, on the control or modulation of light-driven chloride pumping activity of individual HRs, it is important to underst...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901380c

    authors: Sasaki T,Aizawa T,Kamiya M,Kikukawa T,Kawano K,Kamo N,Demura M

    更新日期:2009-12-29 00:00:00

  • Carboxymethylated liver alcohol dehydrogenase: kinetic and thermodynamic characterization of reactions with substrates and inhibitors.

    abstract::Liver alcohol dehydrogenase (LADH) carboxymethylated at Cys-46 (CMLADH) forms two different ternary complexes with 4-trans-(N,N-dimethylamino)cinnamaldehyde (DACA). The complex with reduced nicotinamide adenine dinucleotide (NADH) is characterized by a 38-nm red shift of the long-wavelength pi, pi* transition to 436 n...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00321a085

    authors: Dahl KH,Dunn MF

    更新日期:1984-12-18 00:00:00

  • Nuclear magnetic resonance studies of carbonic anhydrase catalyzed reversible hydration of acetaldehyde by the saturation transfer method.

    abstract::The catalysis of the chemical exchange between acetaldehyde and its hydrate by bovine carbonic anhydrase B was investigated by the NMR line broadening and saturation transfer techniques. While both chemical exchange and binding to the enzyme had an effect on the line broadening of acetaldehyde and its hydrate, the sat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00550a021

    authors: Cheshnovsky D,Navon G

    更新日期:1980-04-29 00:00:00

  • Active Site Metal Identity Alters Histone Deacetylase 8 Substrate Selectivity: A Potential Novel Regulatory Mechanism.

    abstract::Histone deacetylase 8 (HDAC8) is a well-characterized member of the class I acetyl-lysine deacetylase (HDAC) family. Previous work has shown that the efficiency of HDAC8-catalyzed deacetylation of a methylcoumarin peptide varies depending on the identity of the divalent metal ion in the HDAC8 active site. Here we demo...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00851

    authors: Castaneda CA,Lopez JE,Joseph CG,Scholle MD,Mrksich M,Fierke CA

    更新日期:2017-10-24 00:00:00

  • Photoinduced reactivity of the HIV-1 envelope glycoprotein with a membrane-embedded probe reveals insertion of portions of the HIV-1 Gp41 cytoplasmic tail into the viral membrane.

    abstract::The interactions of HIV-1 Env (gp120-gp41) with CD4 and coreceptors trigger a barrage of conformational changes in Env that drive the membrane fusion process. Various regions of gp41 have profound effects on HIV entry and budding. However, the precise interactions between gp41 and the membrane have not been elucidated...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701920f

    authors: Viard M,Ablan SD,Zhou M,Veenstra TD,Freed EO,Raviv Y,Blumenthal R

    更新日期:2008-02-19 00:00:00

  • Conformational selection in the recognition of phosphorylated substrates by the catalytic domain of human Pin1.

    abstract::Post-translational phosphorylation and the related conformational changes in signaling proteins are responsible for regulating a wide range of subcellular processes. Human Pin1 is central to many of these cell signaling pathways in normal and aberrant subcellular processes, catalyzing cis-trans isomerization of the pe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi2009954

    authors: Velazquez HA,Hamelberg D

    更新日期:2011-11-08 00:00:00

  • Preparation and characterization of N-(1-pyrenyl)iodoacetamide-labeled Escherichia coli RNA polymerase.

    abstract::N-(1-Pyrenyl)iodoacetamide has been used to introduce fluorescent probes into Escherichia coli RNA polymerase. After an incubation time of 15 min, approximately 2 pyrene equiv was introduced per enzyme molecule. There was no further increase in modification after more extended periods of incubation. Neither calf thymu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00215a028

    authors: Johnson RS,Bowers M,Eaton Q

    更新日期:1991-01-08 00:00:00

  • MD simulations of Mistic: conformational stability in detergent micelles and water.

    abstract::Mistic is an unusual membrane protein from Bacillus subtilis. It appears to fold and insert autonomously into a lipid bilayer and has been suggested as a tool that aids the targeting of eukaryotic membrane proteins to bacterial membranes. The NMR structure of Mistic in detergent (LDAO) micelles has revealed it to be a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0608818

    authors: Psachoulia E,Bond PJ,Sansom MS

    更新日期:2006-08-01 00:00:00

  • Conformational states of the bacteriophage P22 capsid subunit in relation to self-assembly.

    abstract::The formation of closed icosahedral capsids from a single species of coat protein subunit requires that the subunits assume different conformations at different lattice positions. In the double-stranded DNA bacteriophage P22, formation of correctly dimensioned capsids is mediated by interaction between coat protein su...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00475a030

    authors: Prevelige PE Jr,Thomas D,King J,Towse SA,Thomas GJ Jr

    更新日期:1990-06-12 00:00:00

  • Mechanism of yeast cytochrome b2 action. I. Thermodynamics and relaxation kinetics of the interaction between cytochrome b2 and oxalate.

    abstract::Oxalate is the strongest known inhibitor of yeast cytochrome b2 activity. We have used spectrophotometric titration, temperature-jump relaxation, and calorimetry in an investigation of the interaction between enzyme and inhibitor. The titration data are consistent with noncooperative binding to one site per subunit. T...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00647a002

    authors: Thusius D,Blazy B,Baudras A

    更新日期:1976-01-27 00:00:00

  • Hypertriglyceridemic VLDL decreases plasminogen binding to endothelial cells and surface-localized fibrinolysis.

    abstract::The effect of normo (NTG)- and hypertriglyceridemic (HTG)-VLDL on cultured human umbilical vein endothelial cell (HUVEC) surface-localized fibrinolysis was examined following pre-incubation with NTG-, HTG-VLDL, LDL (1-20 micrograms/mL) or buffer (control). Ligand binding assays, using 125I-labeled tcu-PA, t-PA, or Glu...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952032i

    authors: Li XN,Koons JC,Benza RL,Parks JM,Varma VK,Bradley WA,Gianturco SH,Taylor KB,Grammer JR,Tabengwa EM,Booyse FM

    更新日期:1996-05-14 00:00:00

  • Binding of islet amyloid polypeptide to supported lipid bilayers and amyloid aggregation at the membranes.

    abstract::Amyloid deposition of human islet amyloid polypeptide (hIAPP) in the islets of Langerhans is closely associated with the pathogenesis of type II diabetes mellitus. Despite substantial evidence linking amyloidogenic hIAPP to loss of β-cell mass and decreased pancreatic function, the molecular mechanism of hIAPP cytotox...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi300542g

    authors: Sasahara K,Morigaki K,Okazaki T,Hamada D

    更新日期:2012-09-04 00:00:00

  • Peripheral benzodiazepine receptor antisense knockout increases tumorigenicity of MA-10 Leydig cells in vivo and in vitro.

    abstract::Peripheral benzodiazepine receptors (PBR), first described more than 20 years ago, have been attributed with many putative functions including ones in cellular proliferation and cellular respiration. Hence, it is quite conceivable that deregulation of this receptor could lead to pathology. We and others have reported ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi030251v

    authors: Weisinger G,Kelly-Hershkovitz E,Veenman L,Spanier I,Leschiner S,Gavish M

    更新日期:2004-09-28 00:00:00