Dynamic tradeoffs in the raft-mediated entry of human immunodeficiency virus type 1 into cells.

Abstract:

:To initiate an infection human immunodeficiency virus type 1 (HIV-1) particles must first bind to receptors on the surface of their host cells, a process that eventually leads to fusion of viral and cellular membranes and release of the viral genome into the cytoplasm. Understanding the molecular mechanisms of these processes may enable the development of new anti-HIV strategies. Disagreement currently prevails on the role in virus entry of microdomains within the cellular plasma membrane known as lipid rafts. Experiments have suggested that lipid rafts, in their interactions with cellular receptors and viral particles, either promote or have minimal effect on viral entry. Here we develop a dynamic model for HIV-1 entry that enables us to identify and quantitatively assess tradeoffs that can arise from the clustering of receptors in rafts. Specifically, receptor clustering can be detrimental to the initiation of viral infection by reducing the probability that a virus particle finds its primary receptor, CD4. However, receptor clustering can also enable a virus particle, once bound, to rapidly form multivalent interactions with receptors and co-receptors that are required for virus-cell membrane fusion. We show how the resolution of such tradeoffs hinges on the level and spatial distribution of receptors and co-receptors on the cell surface, and we discuss implications of these effects for the design of therapeutics that inhibit HIV-1 entry.

journal_name

Biotechnol Bioeng

authors

Lim KI,Yin J

doi

10.1002/bit.20680

subject

Has Abstract

pub_date

2006-02-05 00:00:00

pages

246-57

issue

2

eissn

0006-3592

issn

1097-0290

journal_volume

93

pub_type

杂志文章
  • Reactor optimization for alpha-1,2 glucooligosaccharide synthesis by immobilized dextransucrase.

    abstract::The immobilization of dextransucrase in Ca-alginate beads relies on the close association between dextran polymer and dextransucrase. However, high amounts of dextran in the enzyme preparation drastically limit the specific activity of the immobilized enzyme (4 U/mL of alginate beads). Moreover, even in the absence of...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.1183

    authors: Dols-Lafargue M,Willemot RM,Monsan PF,Remaud-Simeon M

    更新日期:2001-11-05 00:00:00

  • Thermophilic biodegradation of BTEX by two Thermus Species.

    abstract::Two thermophilic bacteria, Thermus aquaticus ATCC 25104 and Thermus species ATCC 27978, were investigated for their abilities to degrade BTEX (benzene, toluene, ethylbenzene, and xylenes). Thermus aquaticus and the Thermus sp. were grown in a nominal medium at 70 degrees C and 60 degrees C, respectively, and resting c...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260480609

    authors: Chen CI,Taylor RT

    更新日期:1995-12-20 00:00:00

  • Yeast suspension filtration: flux enhancement using an upward gas/liquid slug flow-application to continuous alcoholic fermentation with cell recycle.

    abstract::This study deals with the use of an upward gas/liquid slug flow to reduce tubular mineral membrane fouling. The injection of air into the feedstream is designed to create hydrodynamic conditions that destabilize the cake layer over the membrane surface inside the filtration module complex. Experimental study was carri...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(sici)1097-0290(19980405)58:1<47::aid-bit5

    authors: Mercier M,Maranges C,Fonade C,Lafforgue-Delorme C

    更新日期:1998-04-05 00:00:00

  • Saccharification and fermentation of Sugar Cane bagasse by Klebsiella oxytoca P2 containing chromosomally integrated genes encoding the Zymomonas mobilis ethanol pathway.

    abstract::Pretreatment of sugar cane bagasse is essential for a simultaneous saccharification and fermentation (SSF) process which uses recombinant Klebsiella oxytoca strain P2 and Genencor Spezyme CE. Strain P2 has been genetically engineered to express Zymomonas mobilis genes encoding the ethanol pathway and retains the nativ...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260440213

    authors: Doran JB,Aldrich HC,Ingram LO

    更新日期:1994-06-20 00:00:00

  • Influence of uncertainties in pH, pMg, activity coefficients, metabolite concentrations, and other factors on the analysis of the thermodynamic feasibility of metabolic pathways.

    abstract::Thermodynamic feasibility analysis (TFA) has been used as a tool capable of providing additional constraints to the mass balance-based methods of analysis of metabolic networks (e.g., flux balance analysis). Several publications have recently appeared in which TFA of different metabolic pathways from relatively simple...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.22309

    authors: Vojinović V,von Stockar U

    更新日期:2009-07-01 00:00:00

  • Coping with inadvertent lysis of Escherichia coli cultures: Strains resistant to lysogeny and infection by the stealthy lysogenic phage Φ80.

    abstract::Phage Φ80 can infect Escherichia coli in a stealthy manner and persist by forming lysogens. Such Φ80 lysogens are fairly common and often go undetected unless the host is grown at temperatures below 37°C. Since low growth temperatures are required for growing temperature-sensitive mutants and often preferred for large...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.26971

    authors: Srinivas S,Cronan JE

    更新日期:2019-07-01 00:00:00

  • New tools for mass isotopomer data evaluation in (13)C flux analysis: mass isotope correction, data consistency checking, and precursor relationships.

    abstract::13C metabolic flux analysis (MFA) is based on carbon-labeling experiments where a specifically (13)C labeled substrate is fed. The labeled carbon atoms distribute over the metabolic network and the label enrichment of certain metabolic pools is measured by using different methods. Recently, MS methods have been dramat...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.10909

    authors: Wahl SA,Dauner M,Wiechert W

    更新日期:2004-02-05 00:00:00

  • Twenty-four well plate miniature bioreactor system as a scale-down model for cell culture process development.

    abstract::Increasing the throughput and efficiency of cell culture process development has become increasingly important to rapidly screen and optimize cell culture media and process parameters. This study describes the application of a miniaturized bioreactor system as a scaled-down model for cell culture process development u...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.22031

    authors: Chen A,Chitta R,Chang D,Amanullah A

    更新日期:2009-01-01 00:00:00

  • Bioprocess design and economic analysis for the commercial production of environmentally friendly bioinsecticides from Bacillus thuringiensis HD-1 kurstaki.

    abstract::A production process for B. thuringiensis (Bt) bioinsecticides was designed in detail, including alternative batch, low-density fed-batch (LDFB), and high-density fed-batch (HDFB) fermentation configurations. Capital and operating costs, as well as profitability based on simple rate of return, were performed using a p...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20146

    authors: Rowe GE,Margaritis A

    更新日期:2004-05-20 00:00:00

  • Diffusion of lactate and ammonium in relation to growth of Geotrichum candidum at the surface of solid media.

    abstract::Geotrichum candidum was cultivated at the surface of solid model media containing peptone to simulate the composition of Camembert cheese. The surface growth of G. candidum induced the diffusion of substrates from the core to the rind and the diffusion of produced metabolites from the rind to the core. In the range of...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20100

    authors: Aldarf M,Fourcade F,Amrane A,Prigent Y

    更新日期:2004-07-05 00:00:00

  • Arabidopsis glycosyltransferases as biocatalysts in fermentation for regioselective synthesis of diverse quercetin glucosides.

    abstract::Regioselectivity of glycosyltransferases offers an important means to overcome the limitations of chemical synthesis of small molecule glycosides. In this study we explore a large multigene family of UDP-glucose:glycosyltransferases of Arabidopsis for their potential as novel biocatalysts for in vitro synthesis and wh...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20154

    authors: Lim EK,Ashford DA,Hou B,Jackson RG,Bowles DJ

    更新日期:2004-09-05 00:00:00

  • Nitrous oxide production in autotrophic nitrogen removal granular sludge: A modeling study.

    abstract::The sustainability of autotrophic granular system performing partial nitritation and anaerobic ammonium oxidation (anammox) for complete nitrogen removal is impaired by the production of nitrous oxide (N2 O). A systematic analysis of the pathways and affecting parameters is, therefore, required for developing N 2 O mi...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.26937

    authors: Chen X,Ni BJ,Sin G

    更新日期:2019-06-01 00:00:00

  • Corynecin (chloramphenicol analogs) fermentation studies: selective production of Corynecin I by Corynebacterium hydrocarboclastus grown on acetate.

    abstract::Corynebacterium hydrocarboclastus KY 8835 grew in the acetate medium and accumulated 28mM Corynecins which was the highest production yield among the processes using various carbon sources. Selective production of Corynecin I (over 90% of all Corynecins), which had been desired for increase of the product yield, was a...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260190705

    authors: Nakano H,Tomita F,Yamaguchi K,Nagashima M,Suzuki T

    更新日期:1977-07-01 00:00:00

  • Isolation, renaturation, and formation of disulfide bonds of eukaryotic proteins expressed in Escherichia coli as inclusion bodies.

    abstract::Expression of recombinant proteins in Escherichia coli often results in the formation of insoluble inclusion bodies, In case of expression of eukaryotic proteins containing cysteine, which may form disulfide bonds in the native active protein, often nonnative inter- and intramolecular disulfide bonds exist in the incl...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260410103

    authors: Fischer B,Sumner I,Goodenough P

    更新日期:1993-01-05 00:00:00

  • Tobacco smoke as inducer for gas phase-controlled transgene expression in mammalian cells and mice.

    abstract::Capitalizing on components evolved to metabolize ethanol in Aspergillus nidulans, we previously designed the first molecular gas-gene expression interface using gaseous acetaldehyde as the major inducer. This fungus-derived acetaldehyde-inducible gene regulation (AIR) system operated perfectly and enabled precise and ...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.20482

    authors: Weber W,Spielmann M,Daoud El-Baba M,Keller B,Aubel D,Fussenegger M

    更新日期:2005-06-30 00:00:00

  • Classification, error detection, and reconciliation of process information in complex biochemical systems.

    abstract::Bioprocess identification starts with collection of process information. Usually there is a variety of information available, consisting of actual measurement data, historical data, empirical kinetic and yield correlations, and general knowledge available from literature. A central problem is to find out how the vario...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(SICI)1097-0290(19960220)49:4<364::AID-BIT

    authors: Noorman HJ,Romein B,Luyben KC,Heijnen JJ

    更新日期:1996-02-20 00:00:00

  • Improved performance with multiple fermentors for repeated batch cultivation for non-growth-associated products.

    abstract::Based on batch cultivation data for the production of L-glutamic acid from glucose, a comparative evaluation was made for repeated batch cultivations using one and more fermentors. The problem was formulated as maximizing the productivity of metabolic product with the specified conversion with respect to the cell age ...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260270524

    authors: Shimizu K,Kobayashi T,Nagara A,Matsubara M

    更新日期:1985-05-01 00:00:00

  • Bcl-xL expression interferes with the effects of L-glutamine supplementation on hybridoma cultures.

    abstract::While feeding protocols and ectopic expression of anti-apoptotic genes have been used to improve the viability of hybridoma cell lines, the effect of the expression levels of survival genes on the behavior of hybridomas following nutrient supplementation is unknown. In this study, we compared the behavior of the Sp2/0...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.10467

    authors: Charbonneau JR,Furtak T,Lefebvre J,Gauthier ER

    更新日期:2003-02-05 00:00:00

  • Reference and counter electrode positions affect electrochemical characterization of bioanodes in different bioelectrochemical systems.

    abstract::The placement of the reference electrode (RE) in various bioelectrochemical systems is often varied to accommodate different reactor configurations. While the effect of the RE placement is well understood from a strictly electrochemistry perspective, there are impacts on exoelectrogenic biofilms in engineered systems ...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.25253

    authors: Zhang F,Liu J,Ivanov I,Hatzell MC,Yang W,Ahn Y,Logan BE

    更新日期:2014-10-01 00:00:00

  • Analysis of protein distribution in budding yeast.

    abstract::Flow cytometry is a fast and sensitive method that allows monitoring of different cellular parameters on large samples of a population. Protein distributions give relevant information on growth dynamics, since they are related to the age distribution and depend on the law of growth of the population and the law of pro...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260250510

    authors: Alberghina L,Mariani L,Martegani E,Vanoni M

    更新日期:1983-05-01 00:00:00

  • In vitro degradation of natural insoluble lignin in aqueous media by the extracellular peroxidases of Phanerochaete chrysosporium.

    abstract::The lignin peroxidases (LIP) and manganese peroxidases (MNP) of Phanerochaete chrysosporium catalyze a wide range of lignin depolymerization reactions with lignin models and synthetic lignins in solution. However, their ability to degrade insoluble natural lignin in aqueous media has not been demonstrated. Insoluble i...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/(sici)1097-0290(19980320)57:6<704::aid-bit

    authors: Thompson DN,Hames BR,Reddy CA,Grethlein HE

    更新日期:1998-03-20 00:00:00

  • Elimination of hydrophobic volatile organic compounds in fungal biofilters: reducing start-up time using different carbon sources.

    abstract::Fungal biofilters have been recently studied as an alternative to the bacterial systems for the elimination of hydrophobic volatile organic compounds (VOC). Fungi foster reduced transport limitation of hydrophobic VOCs due to their hydrophobic surface and extended gas exchange area associated to the hyphal growth. Nev...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.23003

    authors: Vergara-Fernández A,Hernández S,Revah S

    更新日期:2011-04-01 00:00:00

  • Biomass production of hairy roots of Artemisia annua and Arachis hypogaea in a scaled-up mist bioreactor.

    abstract::Hairy roots have the potential to produce a variety of valuable small and large molecules. The mist reactor is a gas phase bioreactor that has shown promise for low-cost culture of hairy roots. Using a newer, disposable culture bag, mist reactor performance was studied with two species, Artemisia annua L. and Arachis ...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.22892

    authors: Sivakumar G,Liu C,Towler MJ,Weathers PJ

    更新日期:2010-12-01 00:00:00

  • Fractional precipitation of plasmid DNA from lysate by CTAB.

    abstract::Preparative-scale purification of plasmid DNA has been attempted by diverse methods, including precipitation with solvents, salts, and detergents and chromatography with ion-exchange, reversed-phase, and size-exclusion columns. Chromatographic methods such as hydrophobic interaction chromatography (HIC), reversed phas...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.10335

    authors: Lander RJ,Winters MA,Meacle FJ,Buckland BC,Lee AL

    更新日期:2002-09-30 00:00:00

  • Enzymatic acylation of hydroxypropyl cellulose in organic media and determination of ester formation by diffuse reflectance infrared Fourier transform (DRIFT) spectroscopy.

    abstract::Esters were prepared by acylation of hydroxypropyl cellulose with fatty acid catalyzed by immobilized lipase from Candida antarctica in tert-butanol. The nature of the substrates used, the initial water activity of the system, and the molecular weight of the hydroxypropyl cellulose were investigated. Moreover, Fourier...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/1097-0290(20010220)72:4<495::aid-bit1012>3

    authors: Sereti V,Stamatis H,Pappas C,Polissiou M,Kolisis F

    更新日期:2001-02-20 00:00:00

  • Kinetics and mass-transfer phenomena in anaerobic granular sludge.

    abstract::The kinetic properties of acetate-degrading methanogenic granular sludge of different mean diameters were assessed at different up-flow velocities (V(up)). Using this approach, the influence of internal and external mass transfer could be estimated. First, the apparent Monod constant (K(S)) for each data set was calcu...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.1044

    authors: Gonzalez-Gil G,Seghezzo L,Lettinga G,Kleerebezem R

    更新日期:2001-04-20 00:00:00

  • The transient responses of hybridoma cells to nutrient additions in continuous culture: II. Glutamine pulse and step changes.

    abstract::The transient and steady-state responses of hybridoma growth and metabolism to glutamine pulse and step changes have been examined. Metabolic quotients are reported for oxygen, glucose, lactate, ammonia, glutamine, alanine, and other amino acids. The specific glutamine consumption rate increased rapidly after all glut...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.260330414

    authors: Miller WM,Wilke CR,Blanch HW

    更新日期:1989-01-20 00:00:00

  • Milligram scale production of potent recombinant small interfering RNAs in Escherichia coli.

    abstract::Small interfering RNAs (siRNAs) are invaluable research tools for studying gene functions in mammalian cells. siRNAs are mainly produced by chemical synthesis or by enzymatic digestion of double-stranded RNA (dsRNA) produced in vitro. Recently, bacterial cells, engineered with ectopic plant viral siRNA binding protein...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.26740

    authors: Kaur G,Cheung HC,Xu W,Wong JV,Chan FF,Li Y,McReynolds L,Huang L

    更新日期:2018-09-01 00:00:00

  • Effect of compounds released during pretreatment of wheat straw on microbial growth and enzymatic hydrolysis rates.

    abstract::In the process of producing ethanol from lignocellulosic materials such as wheat straw, compounds that can act inhibitory to enzymatic hydrolysis and to cellular growth may be generated during the pretreatment. Ethanol production was evaluated on pretreated wheat straw hydrolysate using four different recombinant Sacc...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.21100

    authors: Panagiotou G,Olsson L

    更新日期:2007-02-01 00:00:00

  • A general kinetic model for biological nutrient removal activated sludge systems: model development.

    abstract::In this article, a kinetic model is developed and presented for biological nutrient removal (BNR) activated sludge (BNRAS) systems in general, but for external nitrification (EN) BNRAS (ENBNRAS) systems in particular. The model is based on the UCTPHO model, but includes some significant modifications, such as anoxic P...

    journal_title:Biotechnology and bioengineering

    pub_type: 杂志文章

    doi:10.1002/bit.21508

    authors: Hu ZR,Wentzel MC,Ekama GA

    更新日期:2007-12-15 00:00:00