Synthesis and inhibition mechanism of Delta lac-acetogenins, a novel type of inhibitor of bovine heart mitochondrial complex I.

Abstract:

:We have synthesized Deltalac-acetogenins that are new acetogenin mimics possessing two n-alkyl tails without an alpha,beta-unsaturated gamma-lactone ring and suggested that their inhibition mechanism may be different from that of common acetogenins [Hamada et al. (2004) Biochemistry 43, 3651-3658]. To elucidate the inhibition mechanism of Deltalac-acetogenins in more detail, we carried out wide structural modifications of original Deltalac-acetogenins and characterized the inhibitory action with bovine heart mitochondrial complex I. In contrast to common acetogenins, both the presence of adjacent bis-THF rings and the stereochemistry around the hydroxylated bis-THF rings are important structural factors required for potent inhibition. The inhibitory potency of a derivative possessing an n-butylphenyl ether structure (compound 7) appeared to be superior to that of the original Deltalac-acetogenins and equivalent to that of bullatacin, one of the most potent natural acetogenins. Double-inhibitor titration of steady-state complex I activity showed that the extent of inhibition of compound 7 and bullatacin is not additive, suggesting that the binding sites of the two inhibitors are not identical. Competition tests using a fluorescent ligand indicated that the binding site of compound 7 does not overlap with that of other complex I inhibitors. The effects of compound 7 on superoxide production from complex I are also different from those of other complex I inhibitors. Our results clearly demonstrate that Deltalac-acetogenins are a novel type of inhibitor acting at the terminal electron-transfer step of bovine complex I.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Ichimaru N,Murai M,Abe M,Hamada T,Yamada Y,Makino S,Nishioka T,Makabe H,Makino A,Kobayashi T,Miyoshi H

doi

10.1021/bi0479003

subject

Has Abstract

pub_date

2005-01-18 00:00:00

pages

816-25

issue

2

eissn

0006-2960

issn

1520-4995

journal_volume

44

pub_type

杂志文章
  • Engineered biosynthesis of novel polyketides: regiospecific methylation of an unnatural substrate by the tcmO O-methyltransferase.

    abstract::TcmO is an O-methyltransferase that methylates the C-8 hydroxyl to Tcm B3, a four-ring aromatic intermediate in the tetracenomycin biosynthetic pathway of Streptomyces glaucescens. The gene encoding this enzyme was expressed in Streptomyces coelicolor CH999 together with the actinorhodin polyketide synthase (PKS) gene...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi952957y

    authors: Fu H,Alvarez MA,Khosla C,Bailey JE

    更新日期:1996-05-28 00:00:00

  • Phenothiazine-binding and attachment sites of CAPP1-calmodulin.

    abstract::In the presence of Ca2+ norchlorpromazine isothiocyanate forms a monocovalent complex with calmodulin: CAPP1-calmodulin (Newton et al, 1983). Trypsin digestion of [3H]CAPP1-calmodulin yields as the major radioactive peptide N epsilon-CAPP-Lys-Met-Lys, corresponding to residues 75-77 of calmodulin. Stoichiometric amoun...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00435a019

    authors: Newton DL,Klee CB

    更新日期:1989-05-02 00:00:00

  • Insights into DNA polymerization mechanisms from structure and function analysis of HIV-1 reverse transcriptase.

    abstract::When the single-stranded RNA genome of HIV-1 is copied into double-stranded DNA, the viral enzyme reverse transcriptase (RT) catalyzes the addition of approximately 20,000 nucleotides; however, the precise mechanism of nucleotide addition is unknown. In this study, we attempt to integrate the genetic data and biochemi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00016a006

    authors: Patel PH,Jacobo-Molina A,Ding J,Tantillo C,Clark AD Jr,Raag R,Nanni RG,Hughes SH,Arnold E

    更新日期:1995-04-25 00:00:00

  • Role of the carboxyl-terminal lectin domain in self-association of galectin-3.

    abstract::Galectin-3 is a member of a large family of beta-galactoside-binding animal lectins and is composed of a carboxyl-terminal lectin domain connected to an amino-terminal nonlectin part. Previous experimental results suggest that, when bound to multivalent glycoconjugates, galectin-3 self-associates through intermolecula...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi971409c

    authors: Yang RY,Hill PN,Hsu DK,Liu FT

    更新日期:1998-03-24 00:00:00

  • Phospholipid vesicle solubilization and reconstitution by detergents. Symmetrical analysis of the two processes using octaethylene glycol mono-n-dodecyl ether.

    abstract::The processes of liposome solubilization and reconstitution were studied by using n-dodecyl octaethylene glycol monoether (C12E8). The solubilization of large unilamellar liposomes prepared by reverse-phase evaporation was systematically investigated by turbidity, 31P nuclear magnetic resonance, and centrifugation exp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00492a022

    authors: Levy D,Gulik A,Seigneuret M,Rigaud JL

    更新日期:1990-10-09 00:00:00

  • Evidence for coupled motion and hydrogen tunneling of the reaction catalyzed by glutamate mutase.

    abstract::Glutamate mutase is one of a group of adenosylcobalamin-dependent enzymes that catalyze unusual isomerizations that proceed through organic radical intermediates generated by homolytic fission of the coenzyme's unique cobalt-carbon bond. These enzymes are part of a larger family of enzymes that catalyze radical chemis...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0616908

    authors: Cheng MC,Marsh EN

    更新日期:2007-01-23 00:00:00

  • New class of bacterial membrane oxidoreductases.

    abstract::A new class of bacterial multisubunit membrane-bound electron-transfer complexes has been identified based on biochemical and bioinformatic data. It contains subunits homologous to the three-subunit molybdopterin oxidoreductases and four additional subunits, two of which are c-type cytochromes. The complex was purifie...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi047267l

    authors: Yanyushin MF,del Rosario MC,Brune DC,Blankenship RE

    更新日期:2005-08-02 00:00:00

  • T4 RNA Ligase joins 2'-deoxyribonucleoside 3',5'-bisphosphates to oligodeoxyribonucleotides.

    abstract::T4 RNA ligase catalyzes the ATP-dependent addition of a single 2'-deoxyribonucleoside 3',5'-bisphosphate to the 3'-hydroxyl of an oligodeoxyribonucleotide. The bisphosphate is joined to the deoxyoligomer by a 3' leads to 5' phosphodiester bond and the product, which is terminated by a 3'-phosphate, is one nucleotide l...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00617a004

    authors: Hinton DM,Baez JA,Gumport RI

    更新日期:1978-11-28 00:00:00

  • Arachidonic Acid Metabolism by Human Cardiovascular CYP2J2 Is Modulated by Doxorubicin.

    abstract::Doxorubicin (DOX) is a chemotherapeutic that is used in the treatment of a wide variety of cancers. However, it causes cardiotoxicity partly because of the formation of reactive oxygen species. CYP2J2 is a human cytochrome P450 that is strongly expressed in cardiomyocytes. It converts arachidonic acid (AA) into four d...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b01025

    authors: Arnold WR,Baylon JL,Tajkhorshid E,Das A

    更新日期:2017-12-26 00:00:00

  • Deep-UV resonance Raman analysis of the Rhodobacter capsulatus cytochrome bc₁complex reveals a potential marker for the transmembrane peptide backbone.

    abstract::Classical strategies for structure analysis of proteins interacting with a lipid phase typically correlate ensemble secondary structure content measurements with changes in the spectroscopic responses of localized aromatic residues or reporter molecules to map regional solvent environments. Deep-UV resonance Raman (DU...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi200596w

    authors: Halsey CM,Oshokoya OO,Jiji RD,Cooley JW

    更新日期:2011-08-02 00:00:00

  • Properties and regulation of the catalytic domain of Ira2p, a Saccharomyces cerevisiae GTPase-activating protein of Ras2p.

    abstract::This work describes the biochemical characterization of the catalytic domain of Ira2p, a Saccharomyces cerevisiae GTPase-activating protein (GAP) regulating the RAS gene products. A fragment of 383 residues (amino acids 1644-2026) was produced in Escherichia coli as glutathione S-transferase fusion protein (GST-Ira2p-...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00042a008

    authors: Parrini MC,Jacquet E,Bernardi A,Jacquet M,Parmeggiani A

    更新日期:1995-10-24 00:00:00

  • Structural homology discloses a bifunctional structural motif at the N-termini of G alpha proteins.

    abstract::In a family of proteins, often the three-dimensional structure has been experimentally determined only for one member or a few members of the family. Homology modeling can be used to model the structures of all other members of the family and thus allow comparison of these structures. This approach was applied to hete...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi026729x

    authors: Kosloff M,Elia N,Selinger Z

    更新日期:2002-12-10 00:00:00

  • Effect of phosphorylation on hydrogen-bonding interactions of the active site histidine of the phosphocarrier protein HPr of the phosphoenolpyruvate-dependent phosphotransferase system determined by 15N NMR spectroscopy.

    abstract::The phosphocarrier protein HPr of the phosphoenolpyruvate-dependent sugar transport system of Escherichia coli can exist in a phosphorylated and a nonphosphorylated form. During phosphorylation, the phosphoryl group is carried on a histidine residue, His15. The hydrogen-bonding state of this histidine was examined wit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00487a026

    authors: van Dijk AA,de Lange LC,Bachovchin WW,Robillard GT

    更新日期:1990-09-04 00:00:00

  • Structural comparison of apomyoglobin and metaquomyoglobin: pH titration of histidines by NMR spectroscopy.

    abstract::Proton NMR spectroscopy was applied to myoglobin in the ferric, water-liganded form (metMbH2O) and the apo form (apoMb) to probe the structure and stability of the latter. Proteins from sperm whale and horse skeletal muscles were studied to simplify the spectral assignment task. Nuclear Overhauser effects and the resp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00143a018

    authors: Cocco MJ,Kao YH,Phillips AT,Lecomte JT

    更新日期:1992-07-21 00:00:00

  • The chloroperoxidase-catalyzed oxidation of phenols. Mechanism, selectivity, and characterization of enzyme-substrate complexes.

    abstract::The reactivity of a series of para-substituted phenolic compounds in the peroxidation catalyzed by chloroperoxidase was investigated, and the results were interpreted on the basis of the binding characteristics of the substrates to the active site of the enzyme. Marked selectivity effects are observed. These operate t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00187a001

    authors: Casella L,Poli S,Gullotti M,Selvaggini C,Beringhelli T,Marchesini A

    更新日期:1994-05-31 00:00:00

  • Two types of hydrocarbon chain interdigitation in sphingomyelin bilayers.

    abstract::Vibrational Raman spectroscopic experiments have been performed as a function of temperature on aqueous dispersions of synthetic DL-erythro-N-lignoceroylsphingosylphosphocholine [C(24):SPM], a racemic mixture of two highly asymmetric hydrocarbon chain length sphingomyelins. Raman spectral peak-height intensity ratios ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00343a036

    authors: Levin IW,Thompson TE,Barenholz Y,Huang C

    更新日期:1985-10-22 00:00:00

  • Prevention of Clostridium sordellii lethal toxin-induced apoptotic cell death by tauroursodeoxycholic acid.

    abstract::Virulent strains of Clostridium sordellii cause gangrenous myonecrosis in humans. The released lethal toxin (TcsL) and hemorrhagic toxin (TcsH) are regarded as the major virulence factors. TcsL inactivates low molecular weight GTP-binding proteins of the Rho/Ras subfamilies by monoglucosylation. In cultured cell lines...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900964c

    authors: Schulz F,Just I,Genth H

    更新日期:2009-09-29 00:00:00

  • Mapping the G-actin binding surface of cofilin using synchrotron protein footprinting.

    abstract::Cofilin is an actin regulatory protein that binds to both monomeric and filamentous actin, and has filament severing activity. Although crystal structures for the monomeric forms of both G-actin and cofilin have been described, the structure of the binary cofilin-G-actin complex is not available. Synchrotron protein f...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0121104

    authors: Guan JQ,Vorobiev S,Almo SC,Chance MR

    更新日期:2002-05-07 00:00:00

  • An iron-sulfur cluster loop motif in the Archaeoglobus fulgidus uracil-DNA glycosylase mediates efficient uracil recognition and removal.

    abstract::The family 4 uracil-DNA glycosylase from the hyperthermophilic organism Archaeoglobus fulgidus (AFUDG) is responsible for the removal of uracil in DNA as the first step in the base excision repair (BER) pathway. AFUDG contains a large solvent-exposed peptide region containing an α helix and loop anchored on each end v...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi3000462

    authors: Engstrom LM,Partington OA,David SS

    更新日期:2012-06-26 00:00:00

  • Circular dichroism and fluorescence studies of homogeneous antibodies to type III pneumococcal polysaccharide.

    abstract::The near-ultraviolet circular dichroism (CD) of three homogeneous anti-type III pneumococcal antibodies in the absence and the presence of the specific hexasaccharide ligand was studied. In addition recombinations and hybridizations of H and L chains derived from two of these antibodies were carried out and the CD spe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00695a013

    authors: Jaton JC,Huser H,Blatt Y,Pecht I

    更新日期:1975-12-02 00:00:00

  • Synthesis and application of cleavable photoactivable heterobifunctional reagents.

    abstract::Three different cleavable photoactivable heterobifunctional reagents have been synthesized and characterized by proton NMR, 13C NMR, mass spectroscopy, infrared spectroscopy, and thin-layer chromatography. They are the N-hydroxysuccinimide ester of 3-[(4-azidophenyl)dithio]-propionic acid, methyl 3-[(4-azidophenyl)dit...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00527a003

    authors: Vanin EF,Ji TH

    更新日期:1981-11-24 00:00:00

  • Protein influences on porphyrin structure in cytochrome c: evidence from Raman difference spectroscopy.

    abstract::To probe the details of protein heme interactions, we have developed a Raman difference spectroscopic technique, which allows reliable detection of very small, approximately equal to 0.01 cm-1, frequency differences. When this technique is applied to heme proteins, structural differences in the protein which perturb t...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00525a030

    authors: Shelnutt JA,Rousseau DL,Dethmers JK,Margoliash E

    更新日期:1981-10-27 00:00:00

  • Thermal stability of membrane-reconstituted yeast cytochrome c oxidase.

    abstract::The thermal dependence of the structural stability of membrane-reconstituted yeast cytochrome c oxidase has been studied by using different techniques including high-sensitivity differential scanning calorimetry, differential detergent solubility thermal gel analysis, and enzyme activity measurements. For these studie...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00455a028

    authors: Morin PE,Diggs D,Freire E

    更新日期:1990-01-23 00:00:00

  • Comparison of the Forward and Reverse Photocycle Dynamics of Two Highly Similar Canonical Red/Green Cyanobacteriochromes Reveals Unexpected Differences.

    abstract::Cyanobacteriochromes (CBCRs) are cyanobacterial photoreceptors that exhibit photochromism between two states: a thermally stable dark-adapted state and a metastable light-adapted state with bound linear tetrapyrrole (bilin) chromophores possessing 15Z and 15E configurations, respectively. The photodynamics of canonica...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.0c00796

    authors: Kirpich JS,Chang CW,Franse J,Yu Q,Escobar FV,Jenkins AJ,Martin SS,Narikawa R,Ames JB,Lagarias JC,Larsen DS

    更新日期:2021-01-13 00:00:00

  • Protein kinase C acylation by palmitoyl coenzyme A facilitates its translocation to membranes.

    abstract::Protein kinase C (PKC) translocation to specific subcellular membrane loci after cellular stimulation is mediated, in part, through its interaction with diacylglycerol, phosphatidylserine, and calcium. Herein, we present multiple lines of evidence which demonstrate that purified rabbit brain PKC undergoes specific acy...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi980565w

    authors: Ford DA,Horner CC,Gross RW

    更新日期:1998-08-25 00:00:00

  • Threonine 41 in beta-catenin serves as a key phosphorylation relay residue in beta-catenin degradation.

    abstract::Beta-catenin phosphorylation at serine 45 (Ser45), threonine 41 (Thr41), Ser37, and Ser33 is critical for beta-catenin degradation, and regulation of beta-catenin phosphorylation is a central part of the canonical Wnt signaling pathway. Beta-catenin mutations at Ser45, Thr41, Ser37, and Ser33 perturb beta-catenin degr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0601149

    authors: Wu G,He X

    更新日期:2006-04-25 00:00:00

  • Exchange rates at the lipid-protein interface of myelin proteolipid protein studied by spin-label electron spin resonance.

    abstract::The electron spin resonance (ESR) spectra from spin-labeled phospholipids in recombinants of myelin proteolipid apoprotein with dimyristoylphosphatidylcholine have been simulated with the exchanged-coupled Bloch equations to obtain values for both the fraction of motionally restricted lipids and the exchange rate betw...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00401a009

    authors: Horváth LI,Brophy PJ,Marsh D

    更新日期:1988-01-12 00:00:00

  • Long-range interaction networks in the function and fidelity of poliovirus RNA-dependent RNA polymerase studied by nuclear magnetic resonance.

    abstract::The fidelity of the poliovirus RNA-dependent RNA polymerase (3D(pol)) plays a direct role in the genomic evolution and pathogenesis of the virus. A single site mutation (Gly64Ser) that is remote from the catalytic center results in a higher fidelity polymerase. NMR studies with [methyl-(13)C]methionine-labeled protein...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi100833r

    authors: Yang X,Welch JL,Arnold JJ,Boehr DD

    更新日期:2010-11-02 00:00:00

  • Role of arginine-163 and the 163REEK166 motif in the oligomerization of truncated alpha A-crystallins.

    abstract::To gain insight into the mechanism by which Arg-163 influences oligomerization of alphaA-crystallin, we prepared a series of truncated alphaA-crystallins with or without mutation of the Arg-163 residue. Expression of the proteins was achieved in Escherichia coli BL21 (DE3) pLysS cells, and alphaA-crystallin was purifi...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi060705z

    authors: Rajan S,Chandrashekar R,Aziz A,Abraham EC

    更新日期:2006-12-26 00:00:00

  • Reconstitution of 5-hydroxytryptamine transport from cholate-disrupted platelet plasma membrane vesicles.

    abstract::The bile acid cholate disrupts platelet plasma membrane vesicles and inactivates 5-hydroxytryptamine transport activity. The transporter appears not to be solubilized by this procedure, but remains associated with a high molecular weight aggregate. Merely removing cholate does not restore the vesicular structure or tr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00617a033

    authors: Rudnick G,Nelson PJ

    更新日期:1978-11-28 00:00:00