Inhibition of c-src transcription by mithramycin: structure-activity relationships of biosynthetically produced mithramycin analogues using the c-src promoter as target.

Abstract:

:The aureolic acid antitumor antibiotic mithramycin (MTM) inhibits both cancer growth and bone resorption by cross-linking GC-rich DNA, thus blocking binding of Sp-family transcription factors to gene regulatory elements. Transcription of c-src, a gene implicated in many human cancers and required for osteoclast-dependent bone resorption, is regulated by the binding of Sp factors to specific elements in its promoter. Therefore, this gene represents an important anticancer target and a potential lead target through which MTM displays its so far uncharacterized action against osteoclastic bone resorption. Here we demonstrate, using DNA binding studies, promoter reporter assays, and RT-PCR, that MTM inhibits Sp binding to the c-src promoter region, thereby decreasing its expression in human cancer cells. Furthermore, selected mithramycin analogues, namely, premithramycin B, mithramycin SK, 7-demethylmithramycin, 4E-ketomithramycin, and 4C-ketodemycarosylmithramycin, generated through combinatorial biosynthesis, were compared with MTM for their ability to block Sp binding to the c-src promoter. Although most of the tested compounds lost their ability to bind to the DNA, alteration of the MTM 3-pentyl side chain led to a compound (mithramycin SK) with the same DNA binding specificity but with lower binding affinity than MTM. While this compound was comparable to MTM in promoter reporter, gene expression, and anticancer assays, given its weaker interaction with the DNA, it may be much less toxic than MTM. The results presented here supplement recent findings and, moreover, allow new conclusions to be made regarding both the structure-activity relationships, particularly with respect to the alkyl side chains, and the mechanism of action of aureolic acid drugs.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Remsing LL,Bahadori HR,Carbone GM,McGuffie EM,Catapano CV,Rohr J

doi

10.1021/bi034091z

subject

Has Abstract

pub_date

2003-07-15 00:00:00

pages

8313-24

issue

27

eissn

0006-2960

issn

1520-4995

journal_volume

42

pub_type

杂志文章
  • Two disaccharides and trimethylamine N-oxide affect Abeta aggregation differently, but all attenuate oligomer-induced membrane permeability.

    abstract::Interaction between aggregates of amyloid beta protein (Abeta) and membranes has been hypothesized by many to be a key event in the mechanism of neurotoxicity associated with Alzheimer's disease (AD). Proposed membrane-related mechanisms of neurotoxicity include ion channel formation, membrane disruption, changes in m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi9006397

    authors: Qi W,Zhang A,Good TA,Fernandez EJ

    更新日期:2009-09-22 00:00:00

  • Stiffness of Cargo-Motor Linkage Tunes Myosin VI Motility and Response to Load.

    abstract::We examine the effect of cargo-motor linkage stiffness on the mechanobiological properties of the molecular motor myosin VI. We use the programmability of DNA nanostructures to modulate cargo-motor linkage stiffness and combine it with high-precision optical trapping measurements to measure the effect of linkage stiff...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b00422

    authors: Shrivastava R,Rai A,Salapaka M,Sivaramakrishnan S

    更新日期:2019-11-26 00:00:00

  • Structural insights into the membrane fusion mechanism mediated by influenza virus hemagglutinin.

    abstract::Membrane fusion is involved in many fundamental cellular processes and entry of enveloped viruses into host cells. Influenza type A virus HA has long served as a paradigm for mechanistic studies of protein-mediated membrane fusion via large-scale structural rearrangements induced by acidic pH. Here we report the newly...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi401525h

    authors: Ni F,Chen X,Shen J,Wang Q

    更新日期:2014-02-11 00:00:00

  • Isatins Inhibit N5-CAIR Synthetase by a Substrate Depletion Mechanism.

    abstract::The continued rise of antibiotic-resistant infections coupled with the limited pipeline of new antimicrobials highlights the pressing need for the development of new antibacterial agents. One potential pathway for new agents is de novo purine biosynthesis as studies have shown that bacteria and lower eukaryotes synthe...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.8b00939

    authors: Streeter CC,Lin Q,Firestine SM

    更新日期:2019-04-30 00:00:00

  • Possibility of shape conformers of the protein inhibitor of the cyclic adenosine monophosphate dependent protein kinase.

    abstract::The heat-stable, protein inhibitor of the cyclic adenosine monophosphate (cAMP) dependent protein kinase [Walsh, D. A., Ashby, C. D., Gonzalez, C., Calkins, D., Fischer, E., & Krebs, E (1971a) J. Biol. Chem. 246, 1977-1985] has been purified to homogeneity from rabbit skeletal muscle by preparative electrophoresis. Em...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00589a011

    authors: McPherson JM,Whitehouse S,Walsh DA

    更新日期:1979-10-30 00:00:00

  • Role of a heterogeneous free state in the formation of a specific RNA-theophylline complex.

    abstract::The helical regions of RNA are generally very stable, but the single-stranded and loop regions often exist as an ensemble of conformations in solution. The theophylline-binding RNA aptamer forms a very stable structure when bound to the bronchodilator theophylline, but the theophylline binding site is not stably forme...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi027103+

    authors: Jucker FM,Phillips RM,McCallum SA,Pardi A

    更新日期:2003-03-11 00:00:00

  • Effect of ADP on binding of skeletal S1 to F-actin.

    abstract::The proximity of skeletal myosin subfragment-1 (S1) to actin, and its orientation with respect to thin filaments of single muscle fibers, were compared in the presence and in the absence of ADP. The proximity was assessed by the efficiency of carbodiimide-induced cross-linking and the orientation by polarization of fl...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi981664c

    authors: Andreev OA,Ushakov DS,Borejdo J

    更新日期:1998-12-22 00:00:00

  • Kinetics of long-chain (sphingoid) base biosynthesis in intact LM cells: effects of varying the extracellular concentrations of serine and fatty acid precursors of this pathway.

    abstract::Serine palmitoyltransferase (EC 2.3.1.50) catalyzes the condensation of L-serine and palmitoyl-CoA to yield 3-ketosphinganine in the first unique reaction of long-chain (sphingoid) base biosynthesis. The kinetic effects of changing the extracellular concentrations of the precursors for this pathway were studied with L...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00401a051

    authors: Merrill AH Jr,Wang E,Mullins RE

    更新日期:1988-01-12 00:00:00

  • Evolutionarily distinct versions of the multidomain enzyme α-isopropylmalate synthase share discrete mechanisms of V-type allosteric regulation.

    abstract::Understanding the evolution of allostery in multidomain enzymes remains an important step in improving our ability to identify and exploit structure-function relationships in allosteric mechanisms. A recent protein similarity network for the DRE-TIM metallolyase superfamily indicated there are two evolutionarily disti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi500702u

    authors: Kumar G,Frantom PA

    更新日期:2014-07-29 00:00:00

  • Biochemical Characterization of Yeast Xrn1.

    abstract::Messenger RNA degradation is an important component of overall gene expression. During the final step of eukaryotic mRNA degradation, exoribonuclease 1 (Xrn1) carries out 5' → 3' processive, hydrolytic degradation of RNA molecules using divalent metal ion catalysis. To initiate studies of the 5' → 3' RNA decay machine...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.9b01035

    authors: Langeberg CJ,Welch WRW,McGuire JV,Ashby A,Jackson AD,Chapman EG

    更新日期:2020-04-21 00:00:00

  • Cholesterol-mediated conformational changes in the steroidogenic acute regulatory protein are essential for steroidogenesis.

    abstract::Although the mechanism by which the steroidogenic acute regulatory protein (StAR) promotes steroidogenesis has been studied extensively, it remains incompletely characterized. Because structural analysis has revealed a hydrophobic sterol-binding pocket (SBP) within StAR, this study sought to examine the regulatory rol...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi401125v

    authors: Rajapaksha M,Kaur J,Bose M,Whittal RM,Bose HS

    更新日期:2013-10-15 00:00:00

  • Metal ion binding to dog osteocalcin studied by 1H NMR spectroscopy.

    abstract::One-dimensional 1H NMR was employed to study the effects of Ca2+ and Lu3+ binding on the apo and calcium-saturated forms of dog bone Gla protein (BGP, osteocalcin). Titration of apo dog BGP with Ca2+ in 20 mM NaCl showed spectral perturbations consistent with the binding of 5 mol equiv of calcium in the NMR slow-excha...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00093a012

    authors: Isbell DT,Du S,Schroering AG,Colombo G,Shelling JG

    更新日期:1993-10-26 00:00:00

  • Effects of subunit interactions on the activity of lactate dehydrogenase studied in immobilized enzyme systems.

    abstract::Rabbit muscle lactate dehydrogenase (LDH) was coupled to Sepharose in such a way that each molecule is expected to be attached via only one subunit. Dissociation of the bound active enzyme by several methods all yielded immobilized subunit derivatives which were inactive. These derivatives were capable of regenerating...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00664a013

    authors: Chan WW,Mosbach K

    更新日期:1976-09-21 00:00:00

  • Purification and characterization of the chaperonin 10 and chaperonin 60 proteins from Rhodobacter sphaeroides.

    abstract::Two heat-shock proteins that show high identity with the Escherichia coli chaperonin 60 (groEL) and chaperonin 10 (groES) chaperonin proteins were purified and characterized from photolithoautotrophically grown Rhodobacter sphaeroides. The proteins were purified by using sucrose density gradient centrifugation and Mon...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00247a013

    authors: Terlesky KC,Tabita FR

    更新日期:1991-08-20 00:00:00

  • Linkage between operator binding and dimer to octamer self-assembly of bacteriophage lambda cI repressor.

    abstract::Cooperative binding of the bacteriophage lambda cI repressor dimer to specific sites of the phage operators OR and OL controls the developmental state of the phage. Cooperativity has long been thought to be mediated by self-assembly of repressor dimers to form tetramers which can bind simultaneously to adjacent operat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi971368k

    authors: Rusinova E,Ross JB,Laue TM,Sowers LC,Senear DF

    更新日期:1997-10-21 00:00:00

  • Solution structure of prokaryotic ribosomal protein S17 by high-resolution NMR spectroscopy.

    abstract::The solution of a primary 16S rRNA-binding ribosomal protein, S17, was investigated by two- and three-dimensional homonuclear and heteronuclear magnetic resonance spectroscopy. Almost complete chemical shift assignments for the 1H, 15N, and 13C resonances have been obtained. The NMR data have been rigorously analyzed ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi951062i

    authors: Jaishree TN,Ramakrishnan V,White SW

    更新日期:1996-03-05 00:00:00

  • A closer look at the spectroscopic properties of possible reaction intermediates in wild-type and mutant (E)-4-hydroxy-3-methylbut-2-enyl diphosphate reductase.

    abstract::(E)-4-Hydroxy-3-methylbut-2-enyl diphosphate reductase (IspH or LytB) catalyzes the terminal step of the MEP/DOXP pathway where it converts (E)-4-hydroxy-3-methylbut-2-enyl diphosphate (HMBPP) into the two products, isopentenyl diphosphate and dimethylallyl diphosphate. The reaction involves the reductive elimination ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi3001215

    authors: Xu W,Lees NS,Hall D,Welideniya D,Hoffman BM,Duin EC

    更新日期:2012-06-19 00:00:00

  • Synthetic charybdotoxin-iberiotoxin chimeric peptides define toxin binding sites on calcium-activated and voltage-dependent potassium channels.

    abstract::Charybdotoxin (ChTX) and iberiotoxin (IbTX) are highly charged peptidyl toxins which exhibit 68% sequence identity and share a similar three-dimensional structure. Despite these structural similarities, IbTX and ChTX differ in their selectivity for two types of potassium channels; large conductance calcium-activated p...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00060a030

    authors: Giangiacomo KM,Sugg EE,Garcia-Calvo M,Leonard RJ,McManus OB,Kaczorowski GJ,Garcia ML

    更新日期:1993-03-09 00:00:00

  • KappaM-conotoxin RIIIK, structural and functional novelty in a K+ channel antagonist.

    abstract::Venomous organisms have evolved a variety of structurally diverse peptide neurotoxins that target ion channels. Despite the lack of any obvious structural homology, unrelated toxins that interact with voltage-activated K(+) channels share a dyad motif composed of a lysine and a hydrophobic amino acid residue, usually ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0495681

    authors: Al-Sabi A,Lennartz D,Ferber M,Gulyas J,Rivier JE,Olivera BM,Carlomagno T,Terlau H

    更新日期:2004-07-13 00:00:00

  • Oxygen blocks the reaction of the FixL-FixJ complex with ATP but does not influence binding of FixJ or ATP to FixL.

    abstract::The RmFixL-RmFixJ oxygen signal transduction system ensures that a cascade of the Sinorhizobium meliloti nitrogen fixation genes is induced as the concentration of O2 drops below 50 microM in symbiotic nodules. Deoxy-RmFixL is a histidine protein kinase that catalyzes a phosphoryl transfer from ATP to the aspartate 54...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051661h

    authors: Sousa EH,Gonzalez G,Gilles-Gonzalez MA

    更新日期:2005-11-22 00:00:00

  • Mechanistic studies unravel the complexity inherent in tau aggregation leading to Alzheimer's disease and the tauopathies.

    abstract::The aggregation of the protein tau into amyloid fibrils is known to be involved in the causation of the neurodegenerative tauopathies and the progression of cognitive decline in Alzheimer's disease. This review surveys the mechanism of tau aggregation with special emphasis on the information obtained from biochemical ...

    journal_title:Biochemistry

    pub_type: 杂志文章,评审

    doi:10.1021/bi400209z

    authors: Ramachandran G,Udgaonkar JB

    更新日期:2013-06-18 00:00:00

  • Baboon lipoprotein(a) binds very weakly to lysine-agarose and fibrin despite the presence of a strong lysine-binding site in apolipoprotein(a) kringle IV type 10.

    abstract::Human apolipoprotein(a) kringle IV type 10 [apo(a) KIV(10)] contains a strong lysine-binding site (LBS) that mediates the interaction of Lp(a) with biological substrates such as fibrin. Mutations in the KIV(10) LBS have been reported in both the rhesus monkey and chimpanzee, and have been proposed to explain the lack ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi048156p

    authors: Belczewski AR,Ho J,Taylor FB Jr,Boffa MB,Jia Z,Koschinsky ML

    更新日期:2005-01-18 00:00:00

  • Electron spin echo envelope modulation study of oxygenated iron-cobalt hybrid hemoglobins reveals molecular features analogous to those of the oxy ferrous protein.

    abstract::Two oxygenated iron-cobalt hybrid hemoglobins (Hbs), (alpha Co-O2 beta Fe-O2)2 and (alpha Fe-O2 beta Co-O2)2, were studied by electron spin echo envelope modulation (ESEEM) spectroscopy in order to measure (i) electron-nuclear hyperfine and nuclear quadrupole coupling to the N epsilon of the proximal histidyl imidazol...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00020a036

    authors: Lee HC,Peisach J,Tsuneshige A,Yonetani T

    更新日期:1995-05-23 00:00:00

  • Design of specific peptide inhibitors for group I phospholipase A2: structure of a complex formed between phospholipase A2 from Naja naja sagittifera (group I) and a designed peptide inhibitor Val-Ala-Phe-Arg-Ser (VAFRS) at 1.9 A resolution reveals unique

    abstract::Phospholipase A(2) (PLA(2)) (E. C. 3.1.1.4) is a common enzyme in the two-way cascade mechanism leading to the production of proinflammatory compounds known as eicosanoids. The binding of phospholipase A(2) to the membrane surface and hydrolysis of phospholipids are thought to involve the formation of a hydrophobic ch...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi035076x

    authors: Singh RK,Vikram P,Makker J,Jabeen T,Sharma S,Dey S,Kaur P,Srinivasan A,Singh TP

    更新日期:2003-10-14 00:00:00

  • Three-dimensional structure of acyl carrier protein determined by NMR pseudoenergy and distance geometry calculations.

    abstract::Distance constraints from two-dimensional NMR cross-relaxation data are used to derive a three-dimensional structure for acyl carrier protein from Escherichia coli. Several approaches to structure determination are explored. The most successful proves to be an approach that combines the early stages of a distance geom...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00416a046

    authors: Holak TA,Kearsley SK,Kim Y,Prestegard JH

    更新日期:1988-08-09 00:00:00

  • Loss of DNA minor groove interactions by exonuclease-deficient Klenow polymerase inhibits O6-methylguanine and abasic site translesion synthesis.

    abstract::The importance of DNA polymerase-DNA minor groove interactions on translesion synthesis (TLS) was examined in vitro using variants of exonuclease-deficient Klenow polymerase and site-specifically modified DNA oligonucleotides. Polymerase variant R668A lacks primer strand interactions, while variant Q849A lacks templat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi047591g

    authors: Gestl EE,Eckert KA

    更新日期:2005-05-10 00:00:00

  • Novel mechanistic class of fatty acid amide hydrolase inhibitors with remarkable selectivity.

    abstract::Fatty acid amide hydrolase (FAAH) is an integral membrane enzyme that degrades the fatty acid amide family of signaling lipids, including the endocannabinoid anandamide. Genetic or pharmacological inactivation of FAAH leads to analgesic, anti-inflammatory, anxiolytic, and antidepressant phenotypes in rodents without s...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi701378g

    authors: Ahn K,Johnson DS,Fitzgerald LR,Liimatta M,Arendse A,Stevenson T,Lund ET,Nugent RA,Nomanbhoy TK,Alexander JP,Cravatt BF

    更新日期:2007-11-13 00:00:00

  • Synthesis of 3'-C-methyladenosine and 3'-C-methyluridine diphosphates and their interaction with the ribonucleoside diphosphate reductase from Corynebacterium nephridii.

    abstract::Two nucleoside diphosphate analogs, 3'-C-methyl-ADP and 3'-C-methyl-UDP, have been tested as substrate and/or allosteric effectors using the adenosylcobalamin-dependent ribonucleoside diphosphate reductase of Corynebacterium nephridii. Neither analog was a substrate for the reductase. However, they did function as all...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00160a035

    authors: Ong SP,Nelson LS,Hogenkamp HP

    更新日期:1992-11-17 00:00:00

  • cAMP binds with high affinity and specificity to the androgen receptor from murine skeletal muscle.

    abstract::cAMP binding of the androgen receptor (AR) from murine skeletal muscle was studied. Testosterone affinity chromatography yielded androgen receptor with about 4000-fold purification. Determination of the cAMP binding in the affinity eluate, by adsorption of protein-cAMP complexes to cellulose ester filters or removal o...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00423a013

    authors: Ofenloch-Hähnle B,Eisele K

    更新日期:1988-11-15 00:00:00

  • A loop between transmembrane helices IX and X of subunit I of cytochrome c oxidase caps the heme a-heme a3-CuB center.

    abstract::Site-directed mutants were prepared of four consecutive and highly conserved residues (His-411, Asp-412, Thr-413, Tyr-414) of an extramembrane loop that connects putative transmembrane helices IX and X of subunit I of Rhodobacter sphaeroides cytochrome c oxidase. The modified enzymes were purified and analyzed by opti...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00171a019

    authors: Hosler JP,Shapleigh JP,Tecklenburg MJ,Thomas JW,Kim Y,Espe M,Fetter J,Babcock GT,Alben JO,Gennis RB

    更新日期:1994-02-08 00:00:00