ChIPs of the beta-globin locus: unraveling gene regulation within an active domain.

Abstract:

:Recent studies of beta-globin gene expression have concentrated on the analysis of factor binding and chromatin structure within the endogenous locus. These studies have more precisely defined the extent and nature of the active chromosomal domain and the elements that organize it. Surprisingly, the beta-globin locus control region (LCR), although critical for high-level gene expression, plays little role in the overall architecture of the active locus. Analysis of the effects of targeted deletion of the beta-globin LCR, along with emerging knowledge of the behavior of the erythroid transcription factor NF-E2, leads to a new perspective on factor binding and LCR function.

journal_name

Curr Opin Genet Dev

authors

Bulger M,Sawado T,Schübeler D,Groudine M

doi

10.1016/s0959-437x(02)00283-6

subject

Has Abstract

pub_date

2002-04-01 00:00:00

pages

170-7

issue

2

eissn

0959-437X

issn

1879-0380

pii

S0959437X02002836

journal_volume

12

pub_type

杂志文章,评审
  • Liquid-like behavior of chromatin.

    abstract::Eukaryotic chromatin is a negatively charged long polymer composed of genomic DNA, histones, and various proteins. The charged property causes the chromatin structure to be dynamically changed. These dynamic changes are critical for genome functions such as gene expression because they directly govern the degree of DN...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2015.11.006

    authors: Maeshima K,Ide S,Hibino K,Sasai M

    更新日期:2016-04-01 00:00:00

  • The RNA polymerase II carboxy-terminal domain: links to a bigger and better 'holoenzyme'?

    abstract::The largest subunit of eukaryotic RNA polymerase II has an unusual tandemly repeated heptapeptide sequence at its carboxyl terminus. The function of this evolutionarily conserved carboxy-terminal domain is unknown; however, new evidence links it to the formation of a large multi-component RNA polymerase II complex pos...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/0959-437x(95)80009-3

    authors: Emili A,Ingles CJ

    更新日期:1995-04-01 00:00:00

  • Small molecule-induced cellular fate reprogramming: promising road leading to Rome.

    abstract::Cellular fate reprogramming holds great promise to generate functional cell types for replenishing new cells and restoring functional loss. Inspired by transcription factor-induced reprogramming, the field of cellular reprogramming has greatly advanced and developed into divergent streams of reprogramming approaches. ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2018.05.004

    authors: Li X,Xu J,Deng H

    更新日期:2018-10-01 00:00:00

  • The third dimension of gene regulation: organization of dynamic chromatin loopscape by SATB1.

    abstract::Compartmentalized distribution of functional components is a hallmark of the eukaryotic nucleus. Technological advances in recent years have provided unprecedented insights into the role of chromatin organization and interactions of various structural-functional components toward gene regulation. SATB1, the global chr...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2007.08.003

    authors: Galande S,Purbey PK,Notani D,Kumar PP

    更新日期:2007-10-01 00:00:00

  • Fibrillln mutations in Marfan syndrome and related phenotypes.

    abstract::A casual association has been established between mutations in the fibrillin 1 gene and Marfan syndrome and related phenotypes. Analysis of mutations in these disease types has provided new insights into microfibril assembly and function. These include evidence for a mutation in a fibrillin 1 domain associated with se...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(96)80007-4

    authors: Ramirez F

    更新日期:1996-06-01 00:00:00

  • Archaebacterial genomes: eubacterial form and eukaryotic content.

    abstract::Since the recognition of the uniqueness and coherence of the archaebacteria (sometimes called Archaea), our perception of their role in early evolution has been modified repeatedly. The deluge of sequence data and rapidly improving molecular systematic methods have combined with a better understanding of archaebacteri...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/0959-437x(94)90065-5

    authors: Keeling PJ,Charlebois RL,Doolittle WF

    更新日期:1994-12-01 00:00:00

  • Chromatin modification and remodeling during early seed development.

    abstract::Seed development starts at double fertilization when two sperms fuse with a female gamete, the egg and central cell, giving rise to the embryo and endosperm, respectively. Uniting two parental genomes into one, unique, zygotic genome is certainly the first event requiring large-scale chromatin modifications and remode...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2007.09.004

    authors: Baroux C,Pien S,Grossniklaus U

    更新日期:2007-12-01 00:00:00

  • MCM proteins: DNA damage, mutagenesis and repair.

    abstract::The MCM2-7 complex, which may act as a replicative helicase during DNA synthesis, plays a central role in S-phase genome stability. MCM proteins are required for processive DNA replication and are a target of S-phase checkpoints. Loss of MCM function causes DNA damage and genome instability. MCM expression is upregula...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2003.11.002

    authors: Bailis JM,Forsburg SL

    更新日期:2004-02-01 00:00:00

  • mRNA translation: influence of the 5' and 3' untranslated regions.

    abstract::Eukaryotic messenger RNA utilization is a tightly controlled process. Control of translation is exerted at several levels, but the predominant step is ribosome binding, which is rate limiting for translation of most mRNAs. There appear to be several alternative modes by which ribosomes bind to the mRNA and initiate tr...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(05)80059-0

    authors: Sonenberg N

    更新日期:1994-04-01 00:00:00

  • Genetic screens in mice for genome integrity maintenance and cancer predisposition.

    abstract::Genome instability is a feature of nearly all cancers and can be exploited for therapy. In addition, a growing number of genome maintenance genes have been associated with developmental disorders. Efforts to understand the role of genome instability in these processes will be greatly facilitated by a more comprehensiv...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2013.10.010

    authors: Balmus G,McIntyre RE

    更新日期:2014-02-01 00:00:00

  • Histone acetylases and deacetylases in cell proliferation.

    abstract::There are several enzymes, acetylases and deacetylases, that can regulate transcription by modifying the acetylation state of histones or other promoter-bound transcription factors. Some of these enzymes are present in multisubunit complexes. Recent efforts to understand the biological role of these enzymes reveals th...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(99)80006-9

    authors: Kouzarides T

    更新日期:1999-02-01 00:00:00

  • Segmentation of the Drosophila embryo.

    abstract::Segmentation in Drosophila is a sequential process directed by at least 30 genes that encode various types of proteins, including: many transcription factors; a putative RNA-binding protein; a membrane-associated receptor kinase; several intracellular protein kinases; a number of secreted signaling molecules; and othe...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/0959-437x(93)90094-6

    authors: Kornberg TB,Tabata T

    更新日期:1993-08-01 00:00:00

  • AngiomiRs--key regulators of angiogenesis.

    abstract::The formation of new blood vessels through the process of angiogenesis is critical in vascular development and homeostasis. Aberrant angiogenesis leads to a variety of diseases, such as ischemia and cancer. Recent studies have revealed important roles for miRNAs in regulating endothelial cell (EC) function, especially...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2009.04.002

    authors: Wang S,Olson EN

    更新日期:2009-06-01 00:00:00

  • Mechanisms of liver-specific gene expression.

    abstract::Significant advances in the field of hepatocyte-specific gene expression have been made during the past year. Several new transcription factors have been cloned and partially characterized. Analyses of the promoter regions of several factors have also been initiated and Drosophila homologs for two of these factors hav...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(05)80282-5

    authors: Sladek FM,Darnell JE

    更新日期:1992-04-01 00:00:00

  • TFIIH: a key component in multiple DNA transactions.

    abstract::The transcription factor TFIIH is a versatile, multi-functional protein complex with multiple engagements. Apart from its role in basal transcription, TFIIH is intimately implicated in DNA repair and (probably) in cell cycle control (both of which are required to prevent carcinogenesis) as well as having possible role...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(96)90006-4

    authors: Hoeijmakers JH,Egly JM,Vermeulen W

    更新日期:1996-02-01 00:00:00

  • The dawn of non-human primate models for neurodevelopmental disorders.

    abstract::Non-human primates (NHPs) have been proposed as good models for neurodevelopmental disorders due to close similarities to humans in terms of brain structure and cognitive function. The recent development of genome editing technologies has opened new avenues to generate and investigate genetically modified NHPs as mode...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2020.05.040

    authors: Aida T,Feng G

    更新日期:2020-12-01 00:00:00

  • Lessons on immune tolerance from the monogenic disease APS1.

    abstract::Autoimmunity is a complex disease process that results from a breakdown in the ability of the immune system to discriminate self from non-self. One approach to unraveling how autoimmunity occurs is to study monogenic diseases, for which a single gene defect is responsible. Recent work on the monogenic autoimmune disea...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2007.04.001

    authors: DeVoss JJ,Anderson MS

    更新日期:2007-06-01 00:00:00

  • Replication origins in yeast versus metazoa: separation of the haves and the have nots.

    abstract::The recent flood of information concerning Saccharomyces cerevisiae replication origins and the proteins that interact with them contrasts alarmingly to the trickle of progress in our understanding of metazoan origins. In mammalian cells, origins are complex and heterogeneous, and appear to be selected by features of ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(98)80141-x

    authors: Gilbert DM

    更新日期:1998-04-01 00:00:00

  • Comparative primate genomics: the year of the chimpanzee.

    abstract::This is the year of the chimpanzee genome. Chimpanzee chromosome 22 has been sequenced and soon will be followed by the whole genome, and thousands of chimpanzee cDNA sequences are available for comparative analysis. Not only does this genomic information allow us to identify human-specific changes in particular genes...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2004.08.007

    authors: Ruvolo M

    更新日期:2004-12-01 00:00:00

  • microRNAs, the cell's Nepenthe: clearing the past during the maternal-to-zygotic transition and cellular reprogramming.

    abstract::The maternal-to-zygotic transition (MZT) is a universal step in animal development characterized by two major events: activation of zygotic transcription and degradation of maternally provided mRNAs. How zygotic gene products instruct the degradation of maternal messages remains a long-standing question in biology. Mi...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2010.04.003

    authors: Giraldez AJ

    更新日期:2010-08-01 00:00:00

  • Polyploidy and genome restructuring: a variety of outcomes.

    abstract::Dramatic genome rearrangement has been observed after whole genome duplication (WGD) in some plant species, leading many to suggest that genome restructuring may be a common consequence of WGD. However, recent analyses of ancient WGDs in yeast and vertebrates have not shown any evidence for increased rearrangement aft...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2009.10.005

    authors: Hufton AL,Panopoulou G

    更新日期:2009-12-01 00:00:00

  • The benefits of expanding studies of trait exaggeration to hemimetabolous insects and beyond morphology.

    abstract::Trait exaggeration, well known to naturalists and evolutionary biologists, has recently become a prominent research subject in the modern field of Evolutionary Developmental Biology. A large number of traits that can be considered as cases of exaggeration exist in nature. Yet, the field has almost exclusively focused ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2016.05.015

    authors: Toubiana W,Khila A

    更新日期:2016-08-01 00:00:00

  • The fight of viruses against apoptosis.

    abstract::The induction of apoptosis of virus-infected cells is an important host defense mechanism against invading pathogens. Some viruses express anti-apoptotic proteins that efficiently block apoptosis induced by death receptors or in response to stress signaled through mitochondria. Viral interference with host cell apopto...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(98)80066-x

    authors: Tschopp J,Thome M,Hofmann K,Meinl E

    更新日期:1998-02-01 00:00:00

  • Coordinate signaling by integrins and receptor tyrosine kinases in the regulation of G1 phase cell-cycle progression.

    abstract::Cell proliferation is dependent upon the activation of receptor tyrosine kinases and integrins by soluble growth factors and extracellular matrix proteins, respectively. It is now apparent that concerted, rather than individual, signaling by these receptors is the critical feature responsible for cell-cycle progressio...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(00)00155-6

    authors: Assoian RK,Schwartz MA

    更新日期:2001-02-01 00:00:00

  • Cardiac reprogramming: from mouse toward man.

    abstract::Loss of cardiomyocytes from cardiovascular disease is irreversible and current therapeutic strategies do not redress the loss of myocardium after injury. The discovery that endogenous fibroblasts in the heart can be reprogrammed to cardiomyocyte-like cells after myocardial infarction and heart function is improved sub...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2013.07.007

    authors: Srivastava D,Berry EC

    更新日期:2013-10-01 00:00:00

  • Notch signaling: direct or what?

    abstract::Notch signaling has been implicated in a wide variety of processes from cell-fate decisions, tissue patterning and morphogenesis to human diseases and cancer. A model for Notch directly regulating gene expression has been proposed and at least two signaling pathways have been identified; however, the molecular mechani...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(98)80115-9

    authors: Weinmaster G

    更新日期:1998-08-01 00:00:00

  • DNA methylation and chromatin modification.

    abstract::DNA methylation and chromatin modification are two global mechanisms that regulate gene expression. Recent studies provide insight into the mechanism of transcriptional silencing by a methyl-CpG binding protein, MeCP2. MeCP2 is shown to interact with the Sin3/histone deacetylase co-repressor complex. Thus, this intera...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(99)80024-0

    authors: Ng HH,Bird A

    更新日期:1999-04-01 00:00:00

  • Pattern formation in the vertebrate nervous system.

    abstract::In recent years, the classical approaches of experimental embryology have been used in combination with more modern techniques to investigate aspects of neurogenesis. This combination has advanced our knowledge of several areas of neuronal development, including the lineages of neuronal precursors, the segmentation of...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/s0959-437x(05)80073-5

    authors: Fraser SE

    更新日期:1991-08-01 00:00:00

  • Hox gene evolution in nematodes: novelty conserved.

    abstract::The conserved homeobox (Hox) gene cluster is neither conserved nor clustered in the nematode Caenorhabditis elegans. Instead, C. elegans has a reduced and dispersed gene complement that is the result the loss of Hox genes in stages throughout its evolutionary history. The roles of Hox genes in patterning the nematode ...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2003.10.009

    authors: Aboobaker A,Blaxter M

    更新日期:2003-12-01 00:00:00

  • How genetic modifiers influence the phenotype of spinal muscular atrophy and suggest future therapeutic approaches.

    abstract::Both complex disorders and monogenetic diseases are often modulated in their phenotype by further genetic, epigenetic or extrinsic factors. This gives rise to extensive phenotypic variability and potentially protection from disease manifestations, known as incomplete penetrance. Approaches including whole transcriptom...

    journal_title:Current opinion in genetics & development

    pub_type: 杂志文章,评审

    doi:10.1016/j.gde.2013.03.003

    authors: Wirth B,Garbes L,Riessland M

    更新日期:2013-06-01 00:00:00