Effect of salts on the stability and folding of staphylococcal nuclease.

Abstract:

:The stability and folding kinetics of wild-type and a mutant staphylococcal nuclease (SNase) at neutral pH are significantly perturbed by the presence of moderate to high concentrations of salts. Very substantial increases in stability toward thermal and urea denaturation were observed; for example, 0.4 M sodium sulfate increased the free energy of wild-type SNase by more than 2 kcal/mol. For the NCA SNase mutant, the presence of the salts abolished the cold denaturation observed at neutral pH with this variant, and substantially increased its stability. Significant effects of salts on the kinetics of refolding were also observed. For NCA SNase, the presence of the salts markedly increased the folding rates (up to 5-fold). On the other hand, chloride, in particular, substantially decreased the rate of folding of the wild-type protein. Since the rates of the slow phases due to proline isomerization were increased by salt, these steps must be coupled to conformational processes. Fluorescence energy transfer between the lone tryptophan (Trp140) and an engineered fluorescent acceptor at residue 64 revealed that the addition of a high concentration of KCl led to the formation of a transient folding intermediate not observed at lower salt concentrations, and in which residues 140 and 64 were much closer than in the native state. The salt-induced effects on the kinetics of folding are attributed to the enhanced stability of the transient folding intermediates. It is likely that the combination of the high net charge, due to the high isoelectric point, and the relatively low intrinsic hydrophobicity, leads to staphylococcal nuclease having only marginal stability at neutral pH. The salt-induced effects on the structure, stability, and kinetics of staphylococcal nuclease are attributed to the binding of counterions, namely, anions, resulting in minimization of intramolecular electrostatic repulsion. This leads to increased stability, more structure, and greater compactness, as observed. Consequently, localized electrostatic repulsion is present at neutral pH in SNase, probably contributing to its marginal stability. The results suggest that, in general, marginally stable globular proteins will be significantly stabilized by salts under conditions where they have a substantial net charge.

journal_name

Biochemistry

journal_title

Biochemistry

authors

Nishimura C,Uversky VN,Fink AL

doi

10.1021/bi000861k

subject

Has Abstract

pub_date

2001-02-20 00:00:00

pages

2113-28

issue

7

eissn

0006-2960

issn

1520-4995

pii

bi000861k

journal_volume

40

pub_type

杂志文章
  • Copper binding to beta-2-microglobulin and its pre-amyloid oligomers.

    abstract::Beta-2-microglobulin (beta2m) deposits as amyloid fibrils in the musculoskeletal system of patients undergoing long-term dialysis treatment as a result of kidney failure. Previous work has shown that Cu(II) binding causes beta2m to organize into nativelike dimers and tetramers that precede amyloid formation. Cu(II) is...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi901172y

    authors: Srikanth R,Mendoza VL,Bridgewater JD,Zhang G,Vachet RW

    更新日期:2009-10-20 00:00:00

  • Thermodynamics of ligand binding to trp repressor.

    abstract::The thermodynamics of L-tryptophan and operator DNA binding to the tryptophan repressor of Escherichia coli were analyzed by titration microcalorimetry and van't Hoff analysis of footprinting titrations, respectively. At 25 degrees C in 10 mM sodium phosphate, pH 7.6, and 0.1 M NaCl, the binding of L-tryptophan to the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00079a029

    authors: Jin L,Yang J,Carey J

    更新日期:1993-07-20 00:00:00

  • Histone-dependent reconstitution and nucleosomal localization of a nonhistone chromosomal protein: the H2A-specific protease.

    abstract::We have described earlier a chromatin-bound protease with unique specificity for histone H2A [Eickbush, T. H., Watson, D. K., & Moudrianakis, E. N. (1976) Cell (Cambridge, Mass.) 9, 785--792]. In the present study, we explore the nature of interactions that form and stabilize the enzyme-chromatin system by using the a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00531a008

    authors: Watson DK,Moudrianakis EN

    更新日期:1982-01-19 00:00:00

  • The crystal structure of eosinophil cationic protein in complex with 2',5'-ADP at 2.0 A resolution reveals the details of the ribonucleolytic active site.

    abstract::Eosinophil cationic protein (ECP) is a component of the eosinophil granule matrix. It shows marked toxicity against helminth parasites, bacteria single-stranded RNA viruses, and host epithelial cells. Secretion of human ECP is related to eosinophil-associated allergic, asthmatic, and inflammatory diseases. ECP belongs...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi0264521

    authors: Mohan CG,Boix E,Evans HR,Nikolovski Z,Nogués MV,Cuchillo CM,Acharya KR

    更新日期:2002-10-08 00:00:00

  • Large activation energy barriers to chaperone-peptide complex formation and dissociation.

    abstract::To probe the mechanism of chaperone substrate selection, we have investigated the kinetics of complex formation and dissociation between the molecular chaperone DnaK and a short peptide (Cro, representing amino acids 1-12 of the cro repressor protein). The Cro protein was N-terminally labeled with the environmentally ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00047a024

    authors: Farr CD,Galiano FJ,Witt SN

    更新日期:1995-11-28 00:00:00

  • Structure of a Novel Phosphotriesterase from Sphingobium sp. TCM1: A Familiar Binuclear Metal Center Embedded in a Seven-Bladed β-Propeller Protein Fold.

    abstract::A novel phosphotriesterase was recently discovered and purified from Sphingobium sp. TCM1 (Sb-PTE) and shown to catalyze the hydrolysis of a broad spectrum of organophosphate esters with a catalytic efficiency that exceeds 10(6) M(-1) s(-1) for the hydrolysis of triphenyl phosphate. The enzyme was crystallized and the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.6b00364

    authors: Mabanglo MF,Xiang DF,Bigley AN,Raushel FM

    更新日期:2016-07-19 00:00:00

  • The role of surface-exposed lysines in wrapping DNA about the bacterial histone-like protein HU.

    abstract::Several basic proteins, including the ubiquitous HU proteins, serve histone-like functions in prokaryotes. Significant sequence conservation exists between HU homologues; yet binding sites varying from 9 to 37 bp have been reported. TF1, an HU homologue with a 37 bp binding site that is encoded by the Bacillus subtili...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi016095e

    authors: Grove A,Saavedra TC

    更新日期:2002-06-18 00:00:00

  • The solution structure of clip domains from Manduca sexta prophenoloxidase activating proteinase-2.

    abstract::Clip domains are structural modules found in arthropod serine proteinases and some proteolytically inactive homologues, which mediate extracellular signaling pathways of development and immunity. While little is known about their structures or functions, clip domains are proposed to be sites for interactions of protei...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi7010724

    authors: Huang R,Lu Z,Dai H,Velde DV,Prakash O,Jiang H

    更新日期:2007-10-16 00:00:00

  • Dynamics of light-induced activation in the PAS domain proteins LOV2 and PYP probed by time-resolved tryptophan fluorescence.

    abstract::Light-induced activation of the LOV2-Jα domain of the photoreceptor phototropin from oat is believed to involve the detachment of the Jα helix from the central β-sheet and its subsequent unfolding. The dynamics of these conformational changes were monitored by time-resolved emission spectroscopy with 100 ns time resol...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi101413v

    authors: Hoersch D,Bolourchian F,Otto H,Heyn MP,Bogomolni RA

    更新日期:2010-12-28 00:00:00

  • Human transforming growth factor type beta 2: production by a prostatic adenocarcinoma cell line, purification, and initial characterization.

    abstract::Human type beta 2 transforming growth factor (hTGF-beta 2) was purified from tamoxifen-supplemented, serum-free medium conditioned by the human prostatic adenocarcinoma cell line PC-3. The purification of hTGF-beta 2 was monitored in a growth inhibition assay and was achieved by batch purification on methylsilyl-contr...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00383a002

    authors: Ikeda T,Lioubin MN,Marquardt H

    更新日期:1987-05-05 00:00:00

  • Regeneration of bovine and octopus opsins in situ with natural and artificial retinals.

    abstract::We consider the problem of color regulation in visual pigments for both bovine rhodopsin (lambda max = 500 nm) and octopus rhodopsin (lambda max = 475 nm). Both pigments have 11-cis-retinal (lambda max = 379 nm, in ethanol) as their chromophore. These rhodopsins were bleached in their native membranes, and the opsins ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00432a055

    authors: Koutalos Y,Ebrey TG,Tsuda M,Odashima K,Lien T,Park MH,Shimizu N,Derguini F,Nakanishi K,Gilson HR

    更新日期:1989-03-21 00:00:00

  • Horse Liver Alcohol Dehydrogenase: Zinc Coordination and Catalysis.

    abstract::During catalysis by liver alcohol dehydrogenase (ADH), a water bound to the catalytic zinc is replaced by the oxygen of the substrates. The mechanism might involve a pentacoordinated zinc or a double-displacement reaction with participation by a nearby glutamate residue, as suggested by studies of human ADH3, yeast AD...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/acs.biochem.7b00446

    authors: Plapp BV,Savarimuthu BR,Ferraro DJ,Rubach JK,Brown EN,Ramaswamy S

    更新日期:2017-07-18 00:00:00

  • Mechanism of regulation of cardiac actin-myosin subfragment 1 by troponin-tropomyosin.

    abstract::The effect of Ca2+ on the interaction of bovine cardiac myosin subfragment 1 (S-1) with actin regulated by cardiac troponin-tropomyosin was evaluated. The ratios of actin to troponin and to tropomyosin were adjusted to optimize the Ca2+-dependent regulation of the steady-state actin-activated magnesium adenosinetripho...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00352a010

    authors: Tobacman LS,Adelstein RS

    更新日期:1986-02-25 00:00:00

  • Crystal structures of unbound and aminooxyacetate-bound Escherichia coli gamma-aminobutyrate aminotransferase.

    abstract::The X-ray crystal structures of Escherichia coli gamma-aminobutyrate aminotransferase unbound and bound to the inhibitor aminooxyacetate are reported. The enzyme crystallizes from ammonium sulfate solutions in the P3(2)21 space group with a tetramer in the asymmetric unit. Diffraction data were collected to 2.4 A reso...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi049218e

    authors: Liu W,Peterson PE,Carter RJ,Zhou X,Langston JA,Fisher AJ,Toney MD

    更新日期:2004-08-31 00:00:00

  • Expression, purification, characterization, and reconstitution of the large and small subunits of yeast acetohydroxyacid synthase.

    abstract::Acetohydroxyacid synthase (AHAS, EC 4.1.3.18) catalyzes the first step in the biosynthesis of the branched-chain amino acids. In bacteria, the enzyme has a large subunit containing the catalytic machinery and a small subunit with a regulatory role. In eucaryotes, the evidence for a regulatory subunit is largely indire...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi983013m

    authors: Pang SS,Duggleby RG

    更新日期:1999-04-20 00:00:00

  • Identification of a lipolysis-stimulated receptor that is distinct from the LDL receptor and the LDL receptor-related protein.

    abstract::This paper provides further characterization of a receptor that, in cells lacking the LDL receptor (FH fibroblasts), mediates lipoprotein binding, uptake, and degradation when incubated with oleate at concentrations not exceeding albumin binding capacity. This oleate-activated receptor is genetically distinct from the...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00171a017

    authors: Yen FT,Mann CJ,Guermani LM,Hannouche NF,Hubert N,Hornick CA,Bordeau VN,Agnani G,Bihain BE

    更新日期:1994-02-08 00:00:00

  • The role of phenylalanine 31 in maintaining the conformational stability of ribonuclease P2 from Sulfolobus solfataricus under extreme conditions of temperature and pressure.

    abstract::Ribonuclease P2 from the thermophilic archaebacterium Sulfolobus solfataricus is a small protein (7 kDa) with a known three-dimensional structure. Inspection of the structure and molecular dynamics simulation reveal that three aromatic residues (Phe5, Phe31, and Tyr33) from the hydrophobic core have a strong van der W...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi970467v

    authors: Mombelli E,Afshar M,Fusi P,Mariani M,Tortora P,Connelly JP,Lange R

    更新日期:1997-07-22 00:00:00

  • Role of aspartate 143 in Escherichia coli tRNA-guanine transglycosylase: alteration of heterocyclic substrate specificity.

    abstract::tRNA-guanine transglycosylase (TGT) is a key enzyme involved in the post-transcriptional modification of certain tRNAs in their anticodon wobble positions with queuine. To maintain the correct Watson-Crick base pairing properties of the wobble base (and hence proper translation of the genetic code), TGT must recognize...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi051863d

    authors: Todorov KA,Garcia GA

    更新日期:2006-01-17 00:00:00

  • Role of the K-channel in the pH-dependence of the reaction of cytochrome c oxidase with hydrogen peroxide.

    abstract::The reaction of cytochrome c oxidase (COX) from Rhodobacter sphaeroides with hydrogen peroxide has been studied at alkaline (pH 8.5) and acidic (pH 6.5) conditions with the aid of a stopped-flow apparatus. Absorption changes in the entire 350-800 nm spectral range were monitored and analyzed by a global fitting proced...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi010115v

    authors: Pecoraro C,Gennis RB,Vygodina TV,Konstantinov AA

    更新日期:2001-08-14 00:00:00

  • Probing the specificity determinants of amino acid recognition by arginase.

    abstract::Arginase is a binuclear manganese metalloenzyme that serves as a therapeutic target for the treatment of asthma, erectile dysfunction, and atherosclerosis. In order to better understand the molecular basis of inhibitor affinity, we have employed site-directed mutagenesis, enzyme kinetics, and X-ray crystallography to ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi801911v

    authors: Shishova EY,Di Costanzo L,Emig FA,Ash DE,Christianson DW

    更新日期:2009-01-13 00:00:00

  • A distinctive RNA fold: the solution structure of an analogue of the yeast tRNAPhe T Psi C domain.

    abstract::The structure of an analogue of the yeast tRNAPhe T Psi C stem-loop has been determined by NMR spectroscopy and restrained molecular dynamics. The molecule contained the highly conserved modification ribothymidine at its naturally occurring position. The ribothymidine-modified T Psi C stem-loop is the product of the m...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi990118w

    authors: Koshlap KM,Guenther R,Sochacka E,Malkiewicz A,Agris PF

    更新日期:1999-07-06 00:00:00

  • The high molecular weight nerve growth factor complex from Mastomys natalensis differs from the murine nerve growth factor complex.

    abstract::Both the male and the female of Mastomys natalensis, an African rat, have high levels of nerve growth factor (NGF) in their submaxillary glands. Mastomys high molecular weight (HMW) NGF was purified by gel filtration and ion-exchange chromatography and was compared with HMW NGF from the male mouse submaxillary gland. ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00418a007

    authors: Darling TL,Fahnestock M

    更新日期:1988-09-06 00:00:00

  • Cardiac-specific Nkx2.5 homeodomain: conformational stability and specific DNA binding of Nkx2.5(C56S).

    abstract::The cardiac-specific Nkx2.5 homeodomain has been expressed as a 79-residue protein with the oxidizable Cys(56) replaced with Ser. The Nkx2.5 or Nkx2.5(C56S) homeodomain is 73% identical in sequence to and has the same NMR structure as the vnd (ventral nervous system defective)/NK-2 homeodomain of Drosophila when bound...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi050835s

    authors: Fodor E,Mack JW,Maeng JS,Ju JH,Lee HS,Gruschus JM,Ferretti JA,Ginsburg A

    更新日期:2005-09-20 00:00:00

  • Proximity between nucleotide/dinucleotide and metal ion binding sites in DNA-dependent RNA polymerase from Escherichia coli.

    abstract::In order to understand translocation in transcription, it is important to develop a continuous functional assay for RNA polymerase (RNAP) activity in vitro. Fluorescent derivatives of ATP, UTP, UpA, and CpA with aminonaphthalene-5-sulfonic acid (AmNS) attached to the nucleotide triphosphates via a gamma-phosphoramidat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00143a013

    authors: Tyagi SC,Wu FY

    更新日期:1992-07-21 00:00:00

  • Effects of base mutations on topoisomerase II DNA cleavage stimulated by mAMSA in short DNA oligomers.

    abstract::DNA cleavage by topoisomerase II in the absence or presence of mAMSA, and VM-26 was investigated in a series of oligonucleotides of 36 and 42 base pairs, which were derived from the DNA sequence of the major topoisomerase II cleavage site in the matrix-associated region of SV40 DNA. Topoisomerase II introduced strand ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00052a020

    authors: Capranico G,Tinelli S,Zunino F,Kohn KW,Pommier Y

    更新日期:1993-01-12 00:00:00

  • Electron transfer within xanthine oxidase: a solvent kinetic isotope effect study.

    abstract::Solvent kinetic isotope effect studies of electron transfer within xanthine oxidase have been performed, using a stopped-flow pH-jump technique to perturb the distribution of reducing equivalents within partially reduced enzyme and follow the kinetics of reequilibration spectrophotometrically. It is found that the rat...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00099a004

    authors: Hille R

    更新日期:1991-09-03 00:00:00

  • Primary charge separation in photosystem I: a two-step electrogenic charge separation connected with P700+A0- and P700+A1- formation.

    abstract::A PS I membrane preparation from a PS II deficient mutant of Synechocystis sp. PCC 6803 (psb DI/DII/C) was investigated by picosecond photovoltage and fluorescence measurements. The photovoltage kinetics show two distinct phases. At low excitation energies the fast phase correlates with the fluorescence decay time con...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00195a001

    authors: Hecks B,Wulf K,Breton J,Leibl W,Trissl HW

    更新日期:1994-07-26 00:00:00

  • Structural determination of oligosaccharides derived from lipooligosaccharide of Neisseria gonorrhoeae F62 by chemical, enzymatic, and two-dimensional NMR methods.

    abstract::F62 LOS of Neisseria gonorrhoeae consists of two major LOS components; the higher and smaller molecular weight (MW) components were recognized by MAbs 1-1-M and 3F11 respectively. Base-line separation of the two major oligosaccharide (OS) components from F62 LOS was achieved by Bio-Gel P-4 chromatography after dephosp...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00107a028

    authors: Yamasaki R,Bacon BE,Nasholds W,Schneider H,Griffiss JM

    更新日期:1991-10-29 00:00:00

  • Pyrroloquinoline quinone biogenesis: demonstration that PqqE from Klebsiella pneumoniae is a radical S-adenosyl-L-methionine enzyme.

    abstract::Biogenesis of pyrroloquinoline quinone (PQQ) in Klebsiella pneumoniae requires the expression of six genes (pqqA-F). One of these genes (pqqE) encodes a 43 kDa protein (PqqE) that plays a role in the initial steps in PQQ formation [Veletrop, J. S., et al. (1995) J. Bacteriol. 177, 5088-5098]. PqqE contains two highly ...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi900918b

    authors: Wecksler SR,Stoll S,Tran H,Magnusson OT,Wu SP,King D,Britt RD,Klinman JP

    更新日期:2009-10-27 00:00:00

  • Examination of the solvent perturbation technique as a method to identify enzyme catalytic groups.

    abstract::The present study was undertaken for the purpose of evaluating the solvent perturbation technique as a method to identify enzyme catalytic residues. For establishment of expected directions and sizes of pKa perturbations for different types of acids in different classes of solvents, a study of the pKa of a series of a...

    journal_title:Biochemistry

    pub_type: 杂志文章

    doi:10.1021/bi00287a013

    authors: Grace S,Dunaway-Mariano D

    更新日期:1983-08-30 00:00:00