On how a myosin tryptophan may be perturbed.

Abstract:

:A well-known indication that a nucleotide has bound to myosin is the enhancement of the fluorescence of a specific tryptophan in the "subfragment 1" segment of the protein. Empirically the effect has been enormously useful in myosin enzymology. But beyond an early suggestion that it arises from a purine-tryptophan charge-transfer complex, the mechanism of the effect has not been considered. Here we consider the alternative that it arises from an ionizable group (either another residue or the phosphate of the nucleotide) whose proximity to the tryptophan is altered by substrate binding. We study this possibility by studying the interaction of an ionizable residue and tryptophan when both are incorporated in a diketopiperazine structure. The geometry of the situation is inferred from molecular mechanics simulations. Unexpectedly, the best explanation seems to be that the field of the imposed charge, acting across space, affects events in the excited state of the indole.

authors

Bivin DB,Kubota S,Pearlstein R,Morales MF

doi

10.1073/pnas.90.14.6791

subject

Has Abstract

pub_date

1993-07-15 00:00:00

pages

6791-5

issue

14

eissn

0027-8424

issn

1091-6490

journal_volume

90

pub_type

杂志文章
  • The scientific challenge of understanding and estimating climate change.

    abstract::Given the slow unfolding of what may become catastrophic changes to Earth's climate, many are understandably distraught by failures of public policy to rise to the magnitude of the challenge. Few in the science community would think to question the scientific response to the unfolding changes. However, is the science ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1906691116

    authors: Palmer T,Stevens B

    更新日期:2019-12-03 00:00:00

  • Turning statistical physics models into materials design engines.

    abstract::Despite the success statistical physics has enjoyed at predicting the properties of materials for given parameters, the inverse problem, identifying which material parameters produce given, desired properties, is only beginning to be addressed. Recently, several methods have emerged across disciplines that draw upon o...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1509316112

    authors: Miskin MZ,Khaira G,de Pablo JJ,Jaeger HM

    更新日期:2016-01-05 00:00:00

  • Selection of distinct Hox-Extradenticle interaction modes fine-tunes Hox protein activity.

    abstract::Hox genes encode transcription factors widely used for diversifying animal body plans in development and evolution. To achieve functional specificity, Hox proteins associate with PBC class proteins, Pre-B cell leukemia homeobox (Pbx) in vertebrates, and Extradenticle (Exd) in Drosophila, and were thought to use a uniq...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1006964108

    authors: Saadaoui M,Merabet S,Litim-Mecheri I,Arbeille E,Sambrani N,Damen W,Brena C,Pradel J,Graba Y

    更新日期:2011-02-08 00:00:00

  • AtVPS41-mediated endocytic pathway is essential for pollen tube-stigma interaction in Arabidopsis.

    abstract::In flowering plants, extensive male-female interactions are required for successful fertilization in which various signaling cascades are involved. Prevacuolar compartments (PVC) and vacuoles are two types of subcellular compartments that terminate signal transduction by sequestrating signaling molecules in yeast and ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1602757113

    authors: Hao L,Liu J,Zhong S,Gu H,Qu LJ

    更新日期:2016-05-31 00:00:00

  • traG protein of the F sex factor of Escherichia coli K-12 and its role in conjugation.

    abstract::The traG protein of the F sex factor is an inner membrane protein with a molecular weight of 116,000. Mutants in traG (or in traN) are able to trigger conjugal DNA replication even though they cannot efficiently form stable mating aggregates with F(-) cells. The traG protein (and the traN protein) probably acts in the...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.78.12.7487

    authors: Manning PA,Morelli G,Achtman M

    更新日期:1981-12-01 00:00:00

  • Unifying account of visual motion and position perception.

    abstract::Despite growing evidence for perceptual interactions between motion and position, no unifying framework exists to account for these two key features of our visual experience. We show that percepts of both object position and motion derive from a common object-tracking system--a system that optimally integrates sensory...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1500361112

    authors: Kwon OS,Tadin D,Knill DC

    更新日期:2015-06-30 00:00:00

  • DNase I-hypersensitive sites surround the mouse acetylcholine receptor delta-subunit gene.

    abstract::The mouse skeletal muscle acetylcholine receptor is regulated, at least in part, by transcriptional mechanisms. As a first step toward defining the cis- and trans-acting factors involved in acetylcholine receptor transcriptional regulation, we examined mouse muscle and fibroblast cells for the presence of DNase I-hype...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.83.21.8405

    authors: Crowder CM,Merlie JP

    更新日期:1986-11-01 00:00:00

  • Effect of flow and peristaltic mixing on bacterial growth in a gut-like channel.

    abstract::The ecology of microbes in the gut has been shown to play important roles in the health of the host. To better understand microbial growth and population dynamics in the proximal colon, the primary region of bacterial growth in the gut, we built and applied a fluidic channel that we call the "minigut." This is a chann...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1601306113

    authors: Cremer J,Segota I,Yang CY,Arnoldini M,Sauls JT,Zhang Z,Gutierrez E,Groisman A,Hwa T

    更新日期:2016-10-11 00:00:00

  • Bursting electrical activity in pancreatic beta cells caused by Ca(2+)- and voltage-inactivated Ca2+ channels.

    abstract::We investigate the hypothesis that two classes of Ca2+ currents, one quickly inactivated by Ca2+ and one slowly inactivated by voltage, contribute to bursting electrical activity in pancreatic islets. A mathematical model of these currents is fit to the experimental whole-cell current-voltage and inactivation profiles...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.88.9.3897

    authors: Keizer J,Smolen P

    更新日期:1991-05-01 00:00:00

  • The complete amino acid sequence of prochymosin.

    abstract::The total sequence of 365 amino acid residues in bovine prochymosin is presented. Alignment with the amino acid sequence of porcine pepsinogen shows that 204 amino acid residues are common to the two zymogens. Further comparison and alignment with the amino acid sequence of penicillopepsin shows that 66 residues are l...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.74.6.2321

    authors: Foltmann B,Pedersen VB,Jacobsen H,Kauffman D,Wybrandt G

    更新日期:1977-06-01 00:00:00

  • Cell density and mobility protect swarming bacteria against antibiotics.

    abstract::Swarming bacteria move in multicellular groups and exhibit adaptive resistance to multiple antibiotics. Analysis of this phenomenon has revealed the protective power of high cell densities to withstand exposure to otherwise lethal antibiotic concentrations. We find that high densities promote bacterial survival, even ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0910934107

    authors: Butler MT,Wang Q,Harshey RM

    更新日期:2010-02-23 00:00:00

  • Method to extract multiple states in F1-ATPase rotation experiments from jump distributions.

    abstract::A method is proposed for analyzing fast (10 μs) single-molecule rotation trajectories in F1 adenosinetriphosphatase ([Formula: see text]-ATPase). This method is based on the distribution of jumps in the rotation angle that occur in the transitions during the steps between subsequent catalytic dwells. The method is com...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1915314116

    authors: Volkán-Kacsó S,Le LQ,Zhu K,Su H,Marcus RA

    更新日期:2019-12-17 00:00:00

  • The geographic mosaic of coevolution in mutualistic networks.

    abstract::Ecological interactions shape adaptations through coevolution not only between pairs of species but also through entire multispecies assemblages. Local coevolution can then be further altered through spatial processes that have been formally partitioned in the geographic mosaic theory of coevolution. A major current c...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1809088115

    authors: Medeiros LP,Garcia G,Thompson JN,Guimarães PR Jr

    更新日期:2018-11-20 00:00:00

  • Significant liquid-structure theory of viscosity and self-diffusion of the alkali metals.

    abstract::Significant liquid-structure theory has been used to calculate the transport properties of the alkali metals. Unlike previous calculations, the volume and temperature dependence of the solid-like structure has been taken into consideration. Equations for the potential energy as a function of volume of the alkali metal...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.69.6.1342

    authors: Hsu CC,Eyring H

    更新日期:1972-06-01 00:00:00

  • Mechanism by which arylamine N-acetyltransferase 1 ablation causes insulin resistance in mice.

    abstract::A single-nucleotide polymorphism in the human arylamine N-acetyltransferase 2 (Nat2) gene has recently been identified as associated with insulin resistance in humans. To understand the cellular and molecular mechanisms by which alterations in Nat2 activity might cause insulin resistance, we examined murine ortholog N...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1716990115

    authors: Camporez JP,Wang Y,Faarkrog K,Chukijrungroat N,Petersen KF,Shulman GI

    更新日期:2017-12-26 00:00:00

  • Characterization of the human 5-lipoxygenase gene promoter.

    abstract::Nucleotide sequences that direct transcription of the human 5-lipoxygenase gene have been examined by ligation to the chloramphenicol acetyltransferase gene and determination of chloramphenicol acetyltransferase activity in transfected HeLa and HL-60 cells. Various lengths of 5'-flanking sequences up to 5.9 kilobase p...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.23.9073

    authors: Hoshiko S,Rådmark O,Samuelsson B

    更新日期:1990-12-01 00:00:00

  • Transformation of the cryobehavior of rye protoplasts by modification of the plasma membrane lipid composition.

    abstract::The freezing tolerance of protoplasts isolated from nonacclimated rye leaves (Secale cereale L. cv Puma) was significantly altered by using a pH-induced protoplastliposome fusion technique to modify the lipid composition of the plasma membrane. The increase in freezing tolerance was elicited by fusion with liposomes c...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.85.23.9026

    authors: Steponkus PL,Uemura M,Balsamo RA,Arvinte T,Lynch DV

    更新日期:1988-12-01 00:00:00

  • Global proteomic profiling of phosphopeptides using electron transfer dissociation tandem mass spectrometry.

    abstract::Electron transfer dissociation (ETD) is a recently introduced mass spectrometric technique that provides a more comprehensive coverage of peptide sequences and posttranslational modifications. Here, we evaluated the use of ETD for a global phosphoproteome analysis. In all, we identified a total of 1,435 phosphorylatio...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0611217104

    authors: Molina H,Horn DM,Tang N,Mathivanan S,Pandey A

    更新日期:2007-02-13 00:00:00

  • Streptococcal modulation of cellular invasion via TGF-beta1 signaling.

    abstract::Group A Streptococcus (GAS) and other bacterial pathogens are known to interact with integrins as an initial step in a complex pathway of bacterial ingestion by host cells. Efficient GAS invasion depends on the interaction of bound fibronectin (Fn) with integrins and activation of integrin signaling. TGF-beta1 regulat...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0506668103

    authors: Wang B,Li S,Southern PJ,Cleary PP

    更新日期:2006-02-14 00:00:00

  • Human-caused environmental change: impacts on plant diversity and evolution.

    abstract::Human-caused environmental changes are creating regional combinations of environmental conditions that, within the next 50 to 100 years, may fall outside the envelope within which many of the terrestrial plants of a region evolved. These environmental modifications might become a greater cause of global species extinc...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.091093198

    authors: Tilman D,Lehman C

    更新日期:2001-05-08 00:00:00

  • Phonons of the anomalous element cerium.

    abstract::Many physical and chemical properties of the light rare-earths and actinides are governed by the active role of f electrons, and despite intensive efforts the details of the mechanisms of phase stability and transformation are not fully understood. A prominent example which has attracted a lot of interest, both experi...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1015945108

    authors: Krisch M,Farber DL,Xu R,Antonangeli D,Aracne CM,Beraud A,Chiang TC,Zarestky J,Kim DY,Isaev EI,Ahuja R,Johansson B

    更新日期:2011-06-07 00:00:00

  • The water footprint of humanity.

    abstract::This study quantifies and maps the water footprint (WF) of humanity at a high spatial resolution. It reports on consumptive use of rainwater (green WF) and ground and surface water (blue WF) and volumes of water polluted (gray WF). Water footprints are estimated per nation from both a production and consumption perspe...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1109936109

    authors: Hoekstra AY,Mekonnen MM

    更新日期:2012-02-28 00:00:00

  • Chemosensing in Escherichia coli: two regimes of two-state receptors.

    abstract::The chemotaxis network in Escherichia coli is remarkable for its sensitivity to small relative changes in the concentrations of multiple chemical signals. We present a model for signal integration by mixed clusters of interacting two-state chemoreceptors. Our model results compare favorably to the results obtained by ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0507438103

    authors: Keymer JE,Endres RG,Skoge M,Meir Y,Wingreen NS

    更新日期:2006-02-07 00:00:00

  • Speculative synthetic chemistry and the nitrogenase problem.

    abstract::There exist a limited but growing number of biological metal centers whose properties lie conspicuously outside the realm of known inorganic chemistry. The synthetic analogue approach, broadly directed, offers a powerful exploratory tool that can define intrinsic chemical possibilities for these sites while simultaneo...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章,评审

    doi:10.1073/pnas.0630028100

    authors: Lee SC,Holm RH

    更新日期:2003-04-01 00:00:00

  • Endothelin as an autocrine factor in the regulation of parathyroid cells.

    abstract::Endothelin, originally purified from porcine aortic endothelial cells, is widely distributed in tissues and is recognized as a product of epithelial cells, glial cells, and neurons in addition to endothelial cells. We found evidence by mRNA content and immunoreactivity that this peptide is synthesized in rat parathyro...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.88.10.4235

    authors: Fujii Y,Moreira JE,Orlando C,Maggi M,Aurbach GD,Brandi ML,Sakaguchi K

    更新日期:1991-05-15 00:00:00

  • Killing niche competitors by remote-control bacteriophage induction.

    abstract::A surprising example of interspecies competition is the production by certain bacteria of hydrogen peroxide at concentrations that are lethal for others. A case in point is the displacement of Staphylococcus aureus by Streptococcus pneumoniae in the nasopharynx, which is of considerable clinical significance. How it i...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0809600106

    authors: Selva L,Viana D,Regev-Yochay G,Trzcinski K,Corpa JM,Lasa I,Novick RP,Penadés JR

    更新日期:2009-01-27 00:00:00

  • Primary structural evidence that the H-2Dq region encodes at least three distinct gene products: Dq, Lq, and Rq.

    abstract::Class I gene products D, L, and R encoded by the D region of the H-2q haplotype were isolated by sequential immunoprecipitation from Nonidet P-40 extracts of B10.AKM murine spleen cells. Primary structural comparisons of these molecules were made by tryptic peptide map analyses and radiochemical amino acid sequence de...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.81.8.2499

    authors: Lillehoj EP,Hansen TH,Sachs DH,Coligan JE

    更新日期:1984-04-01 00:00:00

  • Inhibition of growth of pancreatic carcinomas in animal models by analogs of hypothalamic hormones.

    abstract::Using animal models of acinar and ductal pancreatic cancer, we investigated the effect of analogs of hypothalamic hormones on tumor growth. In Wistar/Lewis rats bearing the acinar pancreatic tumor DNCP-322, chronic administration of [L-5-Br-Trp8]somatostatin-14 significantly decreased tumor weights and volume. Somatos...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.81.1.248

    authors: Redding TW,Schally AV

    更新日期:1984-01-01 00:00:00

  • High-resolution imaging of the dynamic tumor cell vascular interface in transparent zebrafish.

    abstract::Cell metastasis is a highly dynamic process that occurs in multiple steps. Understanding this process has been limited by the inability to visualize tumor cell behavior in real time by using animal models. Here, we employ translucent zebrafish and high-resolution confocal microscopy to study how human cancer cells inv...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0703446104

    authors: Stoletov K,Montel V,Lester RD,Gonias SL,Klemke R

    更新日期:2007-10-30 00:00:00

  • Features of the formate dehydrogenase mRNA necessary for decoding of the UGA codon as selenocysteine.

    abstract::The fdhF gene encoding the 80-kDa selenopolypeptide subunit of formate dehydrogenase H from Escherichia coli contains an in-frame TGA codon at amino acid position 140, which encodes selenocysteine. We have analyzed how this UGA "sense codon" is discriminated from a UGA codon signaling polypeptide chain termination. De...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.87.12.4660

    authors: Zinoni F,Heider J,Böck A

    更新日期:1990-06-01 00:00:00