Bacterial peptide chain release factors: conserved primary structure and possible frameshift regulation of release factor 2.

Abstract:

:Escherichia coli peptide chain release factors are proteins that direct the termination of translation in response to specific peptide chain termination codons. The mechanisms of codon recognition and peptidyl-tRNA hydrolysis are unknown. We have characterized the genes encoding release factor 1 (RF-1) and release factor 2 (RF-2) to study the structure-function relationships of the proteins and their regulation in the bacterium. In this report, we present the gene structure of RF-1 and RF-2, and a partial peptide sequence of RF-2. RF-1 and RF-2 are highly homologous in their primary structure. In addition, an in-frame premature opal (UGA) termination codon is located within the RF-2 coding region at amino acid position 26. This region of the protein was sequenced by automated Edman degradation to confirm the predicted reading frame, and a second independent isolate of the RF-2 gene was identified and sequenced to confirm the DNA sequence. These results imply that a frameshift occurs prior to the premature termination codon, thus allowing for translation of RF-2 to be completed. This may represent a mechanism of translational control of RF-2 expression. An alternative possible means of translational regulation is discussed.

authors

Craigen WJ,Cook RG,Tate WP,Caskey CT

doi

10.1073/pnas.82.11.3616

subject

Has Abstract

pub_date

1985-06-01 00:00:00

pages

3616-20

issue

11

eissn

0027-8424

issn

1091-6490

journal_volume

82

pub_type

杂志文章
  • An essential role of NF-kappaB in the "tumor-like" phenotype of arthritic synoviocytes.

    abstract::A hallmark of rheumatoid arthritis is the formation of an aggressive, tumor-like structure called pannus that erodes the joint. A major cellular component of the pannus is the fibroblast-like synoviocyte (FLS), whose morphology strikingly resembles that of a transformed cell, but underlying mechanisms of this "transfo...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0607939103

    authors: Li X,Makarov SS

    更新日期:2006-11-14 00:00:00

  • Dynamic neural architecture for social knowledge retrieval.

    abstract::Social behavior is often shaped by the rich storehouse of biographical information that we hold for other people. In our daily life, we rapidly and flexibly retrieve a host of biographical details about individuals in our social network, which often guide our decisions as we navigate complex social interactions. Even ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1621234114

    authors: Wang Y,Collins JA,Koski J,Nugiel T,Metoki A,Olson IR

    更新日期:2017-04-18 00:00:00

  • Tumor marker-responsive behavior of gels prepared by biomolecular imprinting.

    abstract::We report dynamic glycoprotein recognition of gels prepared by biomolecular imprinting using lectin and antibody molecules as ligands for tumor-specific marker glycoproteins. The glycoprotein-imprinted gels prepared with minute amounts of cross-linkers could dynamically recognize tumor-specific marker glycoproteins by...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0506786103

    authors: Miyata T,Jige M,Nakaminami T,Uragami T

    更新日期:2006-01-31 00:00:00

  • Free entropy and property T factors.

    abstract::We show that a large class of finite factors has free entropy dimension less than or equal to one. This class includes all prime factors and many property T factors. ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.97.18.9881

    authors: Ge L,Shen J

    更新日期:2000-08-29 00:00:00

  • Complex humoral immune response against a benign tumor: frequent antibody response against specific antigens as diagnostic targets.

    abstract::There are numerous studies on the immune response against malignant human tumors. This study was aimed to address the complexity and specificity of humoral immune response against a benign human tumor. We assembled a panel of 62 meningioma-expressed antigens that show reactivity with serum antibodies of meningioma pat...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0500404102

    authors: Comtesse N,Zippel A,Walle S,Monz D,Backes C,Fischer U,Mayer J,Ludwig N,Hildebrandt A,Keller A,Steudel WI,Lenhof HP,Meese E

    更新日期:2005-07-05 00:00:00

  • Self-organization into ferroelectric and antiferroelectric crystals via the interplay between particle shape and dipolar interaction.

    abstract::Ferroelectricity and antiferroelectricity are widely seen in various types of condensed matter and are of technological significance not only due to their electrical switchability but also due to intriguing cross-coupling effects such as electro-mechanical and electro-caloric effects. The control of the two types of d...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1809004115

    authors: Takae K,Tanaka H

    更新日期:2018-10-02 00:00:00

  • Crystal structures that suggest late development of genetic code components for differentiating aromatic side chains.

    abstract::Early forms of the genetic code likely generated "statistical" proteins, with similar side chains occupying the same sequence positions at different ratios. In this scenario, groups of related side chains were treated by aminoacyl-tRNA synthetases as a single molecular species until a discrimination mechanism develope...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.2136794100

    authors: Yang XL,Otero FJ,Skene RJ,McRee DE,Schimmel P,Ribas de Pouplana L

    更新日期:2003-12-23 00:00:00

  • Distant Mimivirus relative with a larger genome highlights the fundamental features of Megaviridae.

    abstract::Mimivirus, a DNA virus infecting acanthamoeba, was for a long time the largest known virus both in terms of particle size and gene content. Its genome encodes 979 proteins, including the first four aminoacyl tRNA synthetases (ArgRS, CysRS, MetRS, and TyrRS) ever found outside of cellular organisms. The discovery that ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1110889108

    authors: Arslan D,Legendre M,Seltzer V,Abergel C,Claverie JM

    更新日期:2011-10-18 00:00:00

  • Brain-derived neurotrophic factor: subcellular compartmentalization and interneuronal transfer as visualized with anti-peptide antibodies.

    abstract::The recent cloning of a second member of the nerve growth factor family, brain-derived neurotrophic factor (BDNF), has prompted investigation into the cells that express this factor's mRNA and protein. In the present study, antibodies raised against unique peptide sequences within the porcine BDNF protein detect BDNF-...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.88.21.9843

    authors: Wetmore C,Cao YH,Pettersson RF,Olson L

    更新日期:1991-11-01 00:00:00

  • DNase I-hypersensitive sites surround the mouse acetylcholine receptor delta-subunit gene.

    abstract::The mouse skeletal muscle acetylcholine receptor is regulated, at least in part, by transcriptional mechanisms. As a first step toward defining the cis- and trans-acting factors involved in acetylcholine receptor transcriptional regulation, we examined mouse muscle and fibroblast cells for the presence of DNase I-hype...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.83.21.8405

    authors: Crowder CM,Merlie JP

    更新日期:1986-11-01 00:00:00

  • Clustered arrangement of keratin intermediate filament genes.

    abstract::We report here that component members of the keratin intermediate filament (IF) type I and type II gene families of sheep are closely linked but apparently the two families are not. Nine genes, accounting for up to half of the keratin IF gene repertoire, were mapped in four cosmid clones and the linkage between the ge...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.83.14.5048

    authors: Powell BC,Cam GR,Fietz MJ,Rogers GE

    更新日期:1986-07-01 00:00:00

  • Associative memory Hamiltonians for structure prediction without homology: alpha/beta proteins.

    abstract::We describe a method for predicting the structure of alpha beta class proteins in the absence of information from homologous structures. The method is based on an associative memory model for short to intermediate range in sequence contacts and a contact potential for long range in sequence contacts. The coefficients ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.252753899

    authors: Hardin C,Eastwood MP,Prentiss MC,Luthey-Schulten Z,Wolynes PG

    更新日期:2003-02-18 00:00:00

  • Estrogen-regulated feedback loop limits the efficacy of estrogen receptor-targeted breast cancer therapy.

    abstract::Endocrine therapy resistance invariably develops in advanced estrogen receptor-positive (ER+) breast cancer, but the underlying mechanisms are largely unknown. We have identified C-terminal SRC kinase (CSK) as a critical node in a previously unappreciated negative feedback loop that limits the efficacy of current ER-t...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1722617115

    authors: Xiao T,Li W,Wang X,Xu H,Yang J,Wu Q,Huang Y,Geradts J,Jiang P,Fei T,Chi D,Zang C,Liao Q,Rennhack J,Andrechek E,Li N,Detre S,Dowsett M,Jeselsohn RM,Liu XS,Brown M

    更新日期:2018-07-31 00:00:00

  • Host plant peptides elicit a transcriptional response to control the Sinorhizobium meliloti cell cycle during symbiosis.

    abstract::The α-proteobacterium Sinorhizobium meliloti establishes a chronic intracellular infection during the symbiosis with its legume hosts. Within specialized host cells, S. meliloti differentiates into highly polyploid, enlarged nitrogen-fixing bacteroids. This differentiation is driven by host cells through the productio...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1400450111

    authors: Penterman J,Abo RP,De Nisco NJ,Arnold MF,Longhi R,Zanda M,Walker GC

    更新日期:2014-03-04 00:00:00

  • Mammalian sprouty proteins assemble into large monodisperse particles having the properties of intracellular nanobatteries.

    abstract::Sprouty proteins act as intracellular inhibitors of receptor tyrosine kinase signaling. Here we show that the mammalian Sprouty2 protein contains an iron-sulfur complex that can exist in an oxidized, reduced, or nitrosylated state. Purified Sprouty2 assembles into large monodisperse spheres containing approximately 24...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0506714102

    authors: Wu X,Alexander PB,He Y,Kikkawa M,Vogel PD,McKnight SL

    更新日期:2005-09-27 00:00:00

  • Expression of the antiapoptotic baculovirus p35 gene in tomato blocks programmed cell death and provides broad-spectrum resistance to disease.

    abstract::The sphinganine analog mycotoxin, AAL-toxin, induces a death process in plant and animal cells that shows apoptotic morphology. In nature, the AAL-toxin is the primary determinant of the Alternaria stem canker disease of tomato, thus linking apoptosis to this disease caused by Alternaria alternata f. sp. lycopersici. ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.232579799

    authors: Lincoln JE,Richael C,Overduin B,Smith K,Bostock R,Gilchrist DG

    更新日期:2002-11-12 00:00:00

  • A superior descriptor of random textures and its predictive capacity.

    abstract::Two-phase random textures abound in a host of contexts, including porous and composite media, ecological structures, biological media, and astrophysical structures. Questions surrounding the spatial structure of such textures continue to pose many theoretical challenges. For example, can two-point correlation function...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0905919106

    authors: Jiao Y,Stillinger FH,Torquato S

    更新日期:2009-10-20 00:00:00

  • Radiocarbon dates and Bayesian modeling support maritime diffusion model for megaliths in Europe.

    abstract::There are two competing hypotheses for the origin of megaliths in Europe. The conventional view from the late 19th and early 20th centuries was of a single-source diffusion of megaliths in Europe from the Near East through the Mediterranean and along the Atlantic coast. Following early radiocarbon dating in the 1970s,...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1813268116

    authors: Schulz Paulsson B

    更新日期:2019-02-26 00:00:00

  • Packing at the protein-water interface.

    abstract::We have determined the packing efficiency at the protein-water interface by calculating the volumes of atoms on the protein surface and nearby water molecules in 22 crystal structures. We find that an atom on the protein surface occupies, on average, a volume approximately 7% larger than an atom of equivalent chemical...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.93.19.10167

    authors: Gerstein M,Chothia C

    更新日期:1996-09-17 00:00:00

  • Shear waves in the diamond-anvil cell reveal pressure-induced instability in (Mg,Fe)O.

    abstract::The emerging picture of Earth's deep interior from seismic tomography indicates more complexity than previously thought. The presence of lateral anisotropy and heterogeneity in Earth's mantle highlights the need for fully anisotropic elasticity data from mineral physics. A breakthrough in high-frequency (gigahertz) ul...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0401564101

    authors: Jacobsen SD,Spetzler H,Reichmann HJ,Smyth JR

    更新日期:2004-04-20 00:00:00

  • A yeast gene required for DNA replication encodes a protein with homology to DNA helicases.

    abstract::A yeast gene has been identified by screening for DNA replication mutants using a permeabilized cell replication assay. The mutant is temperature sensitive for growth and shows a cell cycle phenotype typical of DNA replication mutants. RNA synthesis is normal in the mutant but DNA synthesis ceases upon shift to the no...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.92.17.7642

    authors: Budd ME,Campbell JL

    更新日期:1995-08-15 00:00:00

  • Sadness, but not all negative emotions, heightens addictive substance use.

    abstract::Do negative feelings in general trigger addictive behavior, or do specific emotions play a stronger role? Testing these alternative accounts of emotion and decision making, we drew on the Appraisal Tendency Framework to predict that sadness, specifically, rather than negative mood, generally, would 1) increase craving...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1909888116

    authors: Dorison CA,Wang K,Rees VW,Kawachi I,Ericson KMM,Lerner JS

    更新日期:2020-01-14 00:00:00

  • Crystallography on curved surfaces.

    abstract::We study static and dynamical properties that distinguish 2D crystals constrained to lie on a curved substrate from their flat-space counterparts. A generic mechanism of dislocation unbinding in the presence of varying Gaussian curvature is presented in the context of a model surface amenable to full analytical treatm...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0602755103

    authors: Vitelli V,Lucks JB,Nelson DR

    更新日期:2006-08-15 00:00:00

  • mir-276a strengthens Drosophila circadian rhythms by regulating timeless expression.

    abstract::Circadian rhythms in metazoan eukaryotes are controlled by an endogenous molecular clock. It functions in many locations, including subsets of brain neurons (clock neurons) within the central nervous system. Although the molecular clock relies on transcription/translation feedback loops, posttranscriptional regulation...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1605837113

    authors: Chen X,Rosbash M

    更新日期:2016-05-24 00:00:00

  • Transpeptidase activity of Streptomyces D-alanyl-D carboxypeptidases.

    abstract::In the presence of N(alpha),N(epsilon)-diacetyl-L-Lys-D-Ala-D-Ala as donor, and either D-[(14)C]alanine, [(14)C]-glycine, or meso-[(3)H]diaminopimelic acid as acceptor, the DD carboxypeptidases from Streptomyces R61 and R39 catalyze a transpeptidation reaction with the release of terminal D-alanine from the donor and ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.69.3.662

    authors: Pollock JJ,Ghuysen JM,Linder R,Salton MR,Perkins HR,Nieto M,Leyh-Bouille M,Frere JM,Johnson K

    更新日期:1972-03-01 00:00:00

  • Bypassing the periplasm: reconstitution of the AcrAB multidrug efflux pump of Escherichia coli.

    abstract::AcrAB is a constitutively expressed, major multidrug efflux system of Escherichia coli. We have purified the cytoplasmic membrane component, AcrB, to near homogeneity, and reconstituted the protein into proteoliposomes. In the presence of DeltapH (outside acid), the protein catalyzed the extrusion of fluorescent phosp...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.96.13.7190

    authors: Zgurskaya HI,Nikaido H

    更新日期:1999-06-22 00:00:00

  • Simple model for tuberculosis in cattle and badgers.

    abstract::As an aid to the study of bovine tuberculosis (TB), a simple model has been developed of an epidemic involving two species, cattle and badgers. Each species may infect the other. The proportion of animals affected is assumed relatively small so that the usual nonlinear aspects of epidemic theory are avoided. The model...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0509003102

    authors: Cox DR,Donnelly CA,Bourne FJ,Gettinby G,McInerney JP,Morrison WI,Woodroffe R

    更新日期:2005-12-06 00:00:00

  • Rapid and efficient generation of oligodendrocytes from human induced pluripotent stem cells using transcription factors.

    abstract::Rapid and efficient protocols to generate oligodendrocytes (OL) from human induced pluripotent stem cells (iPSC) are currently lacking, but may be a key technology to understand the biology of myelin diseases and to develop treatments for such disorders. Here, we demonstrate that the induction of three transcription f...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.1614412114

    authors: Ehrlich M,Mozafari S,Glatza M,Starost L,Velychko S,Hallmann AL,Cui QL,Schambach A,Kim KP,Bachelin C,Marteyn A,Hargus G,Johnson RM,Antel J,Sterneckert J,Zaehres H,Schöler HR,Baron-Van Evercooren A,Kuhlmann T

    更新日期:2017-03-14 00:00:00

  • Increased efficiency of oligonucleotide-mediated gene repair through slowing replication fork progression.

    abstract::Targeted gene modification mediated by single-stranded oligonucleotides (SSOs) holds great potential for widespread use in a number of biological and biomedical fields, including functional genomics and gene therapy. By using this approach, specific genetic changes have been created in a number of prokaryotic and euka...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.0406991102

    authors: Wu XS,Xin L,Yin WX,Shang XY,Lu L,Watt RM,Cheah KS,Huang JD,Liu DP,Liang CC

    更新日期:2005-02-15 00:00:00

  • Three-dimensional structure of NADPH-cytochrome P450 reductase: prototype for FMN- and FAD-containing enzymes.

    abstract::Microsomal NADPH-cytochrome P450 reductase (CPR) is one of only two mammalian enzymes known to contain both FAD and FMN, the other being nitric-oxide synthase. CPR is a membrane-bound protein and catalyzes electron transfer from NADPH to all known microsomal cytochromes P450. The structure of rat liver CPR, expressed ...

    journal_title:Proceedings of the National Academy of Sciences of the United States of America

    pub_type: 杂志文章

    doi:10.1073/pnas.94.16.8411

    authors: Wang M,Roberts DL,Paschke R,Shea TM,Masters BS,Kim JJ

    更新日期:1997-08-05 00:00:00