Identifying the miRNA Signature Association with Aging-Related Senescence in Glioblastoma.

Abstract:

:Glioblastoma (GBM) is the most common malignant brain tumor and its malignant phenotypic characteristics are classified as grade IV tumors. Molecular interactions, such as protein-protein, protein-ncRNA, and protein-peptide interactions are crucial to transfer the signaling communications in cellular signaling pathways. Evidences suggest that signaling pathways of stem cells are also activated, which helps the propagation of GBM. Hence, it is important to identify a common signaling pathway that could be visible from multiple GBM gene expression data. microRNA signaling is considered important in GBM signaling, which needs further validation. We performed a high-throughput analysis using micro array expression profiles from 574 samples to explore the role of non-coding RNAs in the disease progression and unique signaling communication in GBM. A series of computational methods involving miRNA expression, gene ontology (GO) based gene enrichment, pathway mapping, and annotation from metabolic pathways databases, and network analysis were used for the analysis. Our study revealed the physiological roles of many known and novel miRNAs in cancer signaling, especially concerning signaling in cancer progression and proliferation. Overall, the results revealed a strong connection with stress induced senescence, significant miRNA targets for cell cycle arrest, and many common signaling pathways to GBM in the network.

journal_name

Int J Mol Sci

authors

Gnanavel M,Murugesan A,Konda Mani S,Yli-Harja O,Kandhavelu M

doi

10.3390/ijms22020517

subject

Has Abstract

pub_date

2021-01-06 00:00:00

issue

2

issn

1422-0067

pii

ijms22020517

journal_volume

22

pub_type

杂志文章
  • Enzymatic Biotransformation of Balloon Flower Root Saponins into Bioactive Platycodin D by Deglucosylation with Caldicellulosiruptor bescii β-Glucosidase.

    abstract::Platycodin D (PD), a major saponin (platycoside) in Platycodi radix (balloon flower root), has higher pharmacological activity than the other major platycosides; however, its content in the plant root is only approximately 10% (w/w) and the productivities of PD by several enzymes are still too low for industrial appli...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms20163854

    authors: Kil TG,Kang SH,Kim TH,Shin KC,Oh DK

    更新日期:2019-08-07 00:00:00

  • Can NF-κB Be Considered a Valid Drug Target in Neoplastic Diseases? Our Point of View.

    abstract::Multidrug resistance (MDR), of the innate and acquired types, is one of major problems in treating tumor diseases with a good chance of success. In this review, we examine the key role of nuclear factor-kappa B (NF-κB) to induce MDR in three tumor models characterized precisely by innate or acquired MDR, in particular...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21093070

    authors: Labbozzetta M,Notarbartolo M,Poma P

    更新日期:2020-04-27 00:00:00

  • Nutrition and Psoriasis.

    abstract::Psoriasis is a chronic inflammatory skin disease characterized by accelerated tumor necrosis factor-α/interleukin-23/interleukin-17 axis, hyperproliferation and abnormal differentiation of epidermal keratinocytes. Psoriasis patients are frequently associated with obesity, diabetes, dyslipidemia, cardiovascular disease...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms21155405

    authors: Kanda N,Hoashi T,Saeki H

    更新日期:2020-07-29 00:00:00

  • A Pathological Study of Acute Pulmonary Toxicity Induced by Inhaled Kanto Loam Powder.

    abstract::The frequency and volume of Asian sand dust (ASD) (Kosa) are increasing in Japan, and it has been reported that ASD may cause adverse respiratory effects. The pulmonary toxicity of ASD has been previously analyzed in mice exposed to ASD particles by intratracheal instillation. To study the pulmonary toxicity induced b...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19020416

    authors: Kobayashi Y,Shimada A,Morita T,Inoue K,Takano H

    更新日期:2018-01-31 00:00:00

  • Predicting Zoonotic Risk of Influenza A Viruses from Host Tropism Protein Signature Using Random Forest.

    abstract::Influenza A viruses remain a significant health problem, especially when a novel subtype emerges from the avian population to cause severe outbreaks in humans. Zoonotic viruses arise from the animal population as a result of mutations and reassortments, giving rise to novel strains with the capability to evade the hos...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms18061135

    authors: Eng CLP,Tong JC,Tan TW

    更新日期:2017-05-25 00:00:00

  • In Silico Analysis of Correlations between Protein Disorder and Post-Translational Modifications in Algae.

    abstract::Recent proteome analyses have reported that intrinsically disordered regions (IDRs) of proteins play important roles in biological processes. In higher plants whose genomes have been sequenced, the correlation between IDRs and post-translational modifications (PTMs) has been reported. The genomes of various eukaryotic...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms160819812

    authors: Kurotani A,Sakurai T

    更新日期:2015-08-20 00:00:00

  • Metabolomics of oxidative stress in recent studies of endogenous and exogenously administered intermediate metabolites.

    abstract::Aerobic metabolism occurs in a background of oxygen radicals and reactive oxygen species (ROS) that originate from the incomplete reduction of molecular oxygen in electron transfer reactions. The essential role of aerobic metabolism, the generation and consumption of ATP and other high energy phosphates, sustains a ba...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms12106469

    authors: Liu J,Litt L,Segal MR,Kelly MJ,Pelton JG,Kim M

    更新日期:2011-01-01 00:00:00

  • MALDI TOF Mass Spectrometry Imaging of Blood Smear: Method Development and Evaluation.

    abstract::The aim of this study was to develop and evaluate matrix assisted LASER desorption ionization (MALDI) time-of-flight (TOF) mass spectrometry imaging (MSI) of blood smear. Integrated light microscope and MALDI IT-TOF mass spectrometer, together with a matrix sublimation device, were used for analysis of blood smears co...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms22020585

    authors: Debeljak Ž,Niehoff AC,Bandjak A,Mandić D,Bošnjak B,Heffer M,Mrđenović S,Marković I,Zjalić M,Šerić V

    更新日期:2021-01-08 00:00:00

  • Bio-guided isolation of the cytotoxic terpenoids from the roots of Euphorbia kansui against human normal cell lines L-O2 and GES-1.

    abstract::The dried roots of Euphorbia kansui (kansui) have been used for centuries in China as a herbal medicine for edema, ascites, and asthma. The 95% ethanol extract showed a significant inhibition of cell proliferation against human normal cell lines L-O2 and GES-1. Bioassay-guided separation of the 95% ethanol extract fro...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms130911247

    authors: Zhang L,Gao L,Li Z,Yan X,Yang Y,Tang Y,Cao Y,Ding A

    更新日期:2012-01-01 00:00:00

  • Antimicrobial Resistance Profile of Planktonic and Biofilm Cells of Staphylococcus aureus and Coagulase-Negative Staphylococci.

    abstract::The objective of the present study was to determine the antimicrobial resistance profile of planktonic and biofilm cells of Staphylococcus aureus and coagulase-negative staphylococci (CoNS). Two hundred Staphylococcus spp. strains were studied, including 50 S. aureus and 150 CoNS strains (50 S. epidermidis, 20 S. haem...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms17091423

    authors: de Oliveira A,Cataneli Pereira V,Pinheiro L,Moraes Riboli DF,Benini Martins K,Ribeiro de Souza da Cunha Mde L

    更新日期:2016-09-01 00:00:00

  • Effects of Extremely Low Frequency Electromagnetic Fields on Melanogenesis through p-ERK and p-SAPK/JNK Pathways in Human Melanocytes.

    abstract::This study evaluated frequency-dependent effects of extremely low frequency electromagnetic fields (ELF-EMFs) on melanogenesis by melanocytes in vitro. Melanocytes were exposed to 2 mT EMFs at 30-75 Hz for 3 days before melanogenesis was examined. Exposure to ELF-EMFs at 50 and 60 Hz induced melanogenic maturation wit...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms18102120

    authors: Kim YM,Cho SE,Kim SC,Jang HJ,Seo YK

    更新日期:2017-10-11 00:00:00

  • Chaperone-E3 Ligase Complex HSP70-CHIP Mediates Ubiquitination of Ribosomal Protein S3.

    abstract::In addition to its role in ribosome biogenesis, ribosomal protein S3 (RPS3), a component of the 40S ribosomal subunit, has been suggested to possess several extraribosomal functions, including an apoptotic function. In this study, we demonstrated that in the mouse brain, the protein levels of RPS3 were altered by the ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19092723

    authors: Hwang I,Cho SW,Ahn JY

    更新日期:2018-09-12 00:00:00

  • Optimization of DNA extraction for RAPD and ISSR analysis of Arbutus unedo L. Leaves.

    abstract::Genetic analysis of plants relies on high yields of pure DNA. For the strawberry tree (Arbutus unedo) this represents a great challenge since leaves can accumulate large amounts of polysaccharides, polyphenols and secondary metabolites, which co-purify with DNA. For this specie, standard protocols do not produce effic...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms12064156

    authors: Sá O,Pereira JA,Baptista P

    更新日期:2011-01-01 00:00:00

  • Metagenomics: A New Way to Illustrate the Crosstalk between Infectious Diseases and Host Microbiome.

    abstract::Microbes have co-evolved with human beings for millions of years. They play a very important role in maintaining the health of the host. With the advancement in next generation sequencing technology, the microbiome profiling in the host can be obtained under different circumstances. This review focuses on the current ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms161125957

    authors: Zhang Y,Lun CY,Tsui SK

    更新日期:2015-11-03 00:00:00

  • The Salt Sensitivity Induced by Disruption of Cell Wall-Associated Kinase 1 (SlWAK1) Tomato Gene Is Linked to Altered Osmotic and Metabolic Homeostasis.

    abstract::Tomato cell wall-associated kinase 1 (SlWAK1) has only been studied in biotic stress response and hence its function in abiotic stress remains unknown. In a screening under salinity of an insertional mutant collection of tomato (Solanum lycopersicum L.), a mutant exhibiting lower degree of leaf chlorosis than wild typ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21176308

    authors: Meco V,Egea I,Ortíz-Atienza A,Drevensek S,Esch E,Yuste-Lisbona FJ,Barneche F,Vriezen W,Bolarin MC,Lozano R,Flores FB

    更新日期:2020-08-31 00:00:00

  • Development of 101 gene-based single nucleotide polymorphism markers in sea cucumber, Apostichopus japonicus.

    abstract::Single nucleotide polymorphisms (SNPs) are currently the marker of choice in a variety of genetic studies. Using the high resolution melting (HRM) genotyping approach, 101 gene-based SNP markers were developed for Apostichopus japonicus, a sea cucumber species with economic significance for the aquaculture industry in...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms13067080

    authors: Du H,Bao Z,Yan J,Tian M,Mu X,Wang S,Lu W

    更新日期:2012-01-01 00:00:00

  • Role of Nitric Oxide in the Cardiovascular and Renal Systems.

    abstract::The gasotransmitters are a family of gaseous signaling molecules which are produced endogenously and act at specific receptors to play imperative roles in physiologic and pathophysiologic processes. As a well-known gasotransmitter along with hydrogen sulfide and carbon monoxide, nitric oxide (NO) has earned repute as ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19092605

    authors: Ahmad A,Dempsey SK,Daneva Z,Azam M,Li N,Li PL,Ritter JK

    更新日期:2018-09-03 00:00:00

  • Loss of Response Gene to Complement 32 (RGC-32) in Diabetic Mouse Retina Is Involved in Retinopathy Development.

    abstract::Diabetic retinopathy (DR) is a severe and recurrent microvascular complication in diabetes. The multifunctional response gene to complement 32 (RGC-32) is involved in the regulation of cell cycle, proliferation, and apoptosis. To investigate the role of RGC-32 in the development of DR, we used human retinal microvascu...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms19113629

    authors: Liao WL,Lin JM,Liu SP,Chen SY,Lin HJ,Wang YH,Lei YJ,Huang YC,Tsai FJ

    更新日期:2018-11-17 00:00:00

  • The MICELI (MICrofluidic, ELectrical, Impedance): Prototyping a Point-of-Care Impedance Platelet Aggregometer.

    abstract::As key cellular elements of hemostasis, platelets represent a primary target for thrombosis and bleeding management. Currently, therapeutic manipulations of platelet function (antithrombotic drugs) and count (platelet transfusion) are performed with limited or no real-time monitoring of the desired outcome at the poin...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21041174

    authors: Roka-Moiia Y,Bozzi S,Ferrari C,Mantica G,Dimasi A,Rasponi M,Santoleri A,Scavone M,Consolo F,Cattaneo M,Slepian MJ,Redaelli A

    更新日期:2020-02-11 00:00:00

  • Listeria Meningitis Complicating Alemtuzumab Treatment in Multiple Sclerosis--Report of Two Cases.

    abstract::Alemtuzumab, a humanized monoclonal antibody targeting the surface molecule CD52, leads to a rapid depletion of immune cells in the innate and adaptive immune system. In phase 2 and 3 trials in multiple sclerosis (MS), infections have been reported more frequently in alemtuzumab than in interferon beta treated patient...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms160714669

    authors: Rau D,Lang M,Harth A,Naumann M,Weber F,Tumani H,Bayas A

    更新日期:2015-06-29 00:00:00

  • Computational Methods for Modeling Aptamers and Designing Riboswitches.

    abstract::Riboswitches, which are located within certain noncoding RNA region perform functions as genetic "switches", regulating when and where genes are expressed in response to certain ligands. Understanding the numerous functions of riboswitches requires computation models to predict structures and structural changes of the...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms18112442

    authors: Gong S,Wang Y,Wang Z,Zhang W

    更新日期:2017-11-17 00:00:00

  • Effect of Glycine on BV-2 Microglial Cells Treated with Interferon-γ and Lipopolysaccharide.

    abstract::Microglia are first-line defense antigen-presenting phagocytes in the central nervous system. Activated microglial cells release pro-inflammatory cytokines and can trigger an oxidative burst. The amino acid glycine exerts anti-inflammatory, immunomodulatory and cytoprotective effects and influences cell volume regulat...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21030804

    authors: Egger F,Jakab M,Fuchs J,Oberascher K,Brachtl G,Ritter M,Kerschbaum HH,Gaisberger M

    更新日期:2020-01-26 00:00:00

  • The Odd Couple(s): An Overview of Beta-Lactam Antibiotics Bearing More Than One Pharmacophoric Group.

    abstract::β-lactam antibiotics are among the most important and widely used antimicrobials worldwide and are comprised of a large family of compounds, obtained by chemical modifications of the common scaffolds. Usually these modifications include the addition of active groups, but less frequently, molecules were synthesized in ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms22020617

    authors: De Rosa M,Verdino A,Soriente A,Marabotti A

    更新日期:2021-01-09 00:00:00

  • Enteric Microbiota⁻Gut⁻Brain Axis from the Perspective of Nuclear Receptors.

    abstract::Nuclear receptors (NRs) play a key role in regulating virtually all body functions, thus maintaining a healthy operating body with all its complex systems. Recently, gut microbiota emerged as major factor contributing to the health of the whole organism. Enteric bacteria have multiple ways to influence their host and ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章,评审

    doi:10.3390/ijms19082210

    authors: Duszka K,Wahli W

    更新日期:2018-07-28 00:00:00

  • KCNK10, a tandem pore domain potassium channel, is a regulator of mitotic clonal expansion during the early stage of adipocyte differentiation.

    abstract::KCNK10, a member of tandem pore domain potassium channel family, gives rise to leak K+ currents. It plays important roles in stabilizing the negative resting membrane potential and in counterbalancing depolarization. We previously demonstrated that kcnk10 expression is quickly elevated during the early stage of adipog...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms151222743

    authors: Nishizuka M,Hayashi T,Asano M,Osada S,Imagawa M

    更新日期:2014-12-09 00:00:00

  • Determination of aflatoxins in peanut products in the northeast region of São Paulo, Brazil.

    abstract::The aim of the present study was to determine aflatoxin levels in peanut products traded in the Northeast region of São Paulo, Brazil. To this end, 240 samples of peanut products traded in the cities of Araras, Leme, Pirassununga and Porto Ferreira were collected from June 2006 to May 2007. The samples were analyzed f...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms10010174

    authors: Oliveira CA,Gonçalves NB,Rosim RE,Fernandes AM

    更新日期:2009-01-01 00:00:00

  • Transcriptional and Morpho-Physiological Responses of Marchantia polymorpha upon Phosphate Starvation.

    abstract::Phosphate (Pi) is a pivotal nutrient that constraints plant development and productivity in natural ecosystems. Land colonization by plants, more than 470 million years ago, evolved adaptive mechanisms to conquer Pi-scarce environments. However, little is known about the molecular basis underlying such adaptations at ...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21218354

    authors: Rico-Reséndiz F,Cervantes-Pérez SA,Espinal-Centeno A,Dipp-Álvarez M,Oropeza-Aburto A,Hurtado-Bautista E,Cruz-Hernández A,Bowman JL,Ishizaki K,Arteaga-Vázquez MA,Herrera-Estrella L,Cruz-Ramírez A

    更新日期:2020-11-07 00:00:00

  • Antitumor mechanisms of amino Acid hydroxyurea derivatives in the metastatic colon cancer model.

    abstract::The paper presents a detailed study of the biological effects of two amino acid hydroxyurea derivatives that showed selective antiproliferative effects in vitro on the growth of human tumor cell line SW620. Tested compounds induced cell cycle perturbations and apoptosis. Proteins were identified by proteomics analyses...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms141223654

    authors: Saban N,Stepanić V,Vučinić S,Horvatić A,Cindrić M,Perković I,Zorc B,Oršolić N,Mintas M,Pavelić K,Pavelić SK

    更新日期:2013-12-04 00:00:00

  • Biodegradation of Bisphenol A by Sphingobium sp. YC-JY1 and the Essential Role of Cytochrome P450 Monooxygenase.

    abstract::Bisphenol A (BPA) is a widespread pollutant threatening the ecosystem and human health. An effective BPA degrader YC-JY1 was isolated and identified as Sphingobium sp. The optimal temperature and pH for the degradation of BPA by strain YC-JY1 were 30 °C and 6.5, respectively. The biodegradation pathway was proposed ba...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms21103588

    authors: Jia Y,Eltoukhy A,Wang J,Li X,Hlaing TS,Aung MM,Nwe MT,Lamraoui I,Yan Y

    更新日期:2020-05-19 00:00:00

  • N,N'-alkylated Imidazolium-derivatives act as quorum-sensing inhibitors targeting the Pectobacterium atrosepticum-induced symptoms on potato tubers.

    abstract::Bacteria belonging to the Pectobacterium genus are the causative agents of the blackleg and soft-rot diseases that affect potato plants and tubers worldwide. In Pectobacterium, the expression of the virulence genes is controlled by quorum-sensing (QS) and N-acylhomoserine lactones (AHLs). In this work, we screened a c...

    journal_title:International journal of molecular sciences

    pub_type: 杂志文章

    doi:10.3390/ijms141019976

    authors: des Essarts YR,Sabbah M,Comte A,Soulère L,Queneau Y,Dessaux Y,Hélias V,Faure D

    更新日期:2013-10-08 00:00:00