BingleSeq: a user-friendly R package for bulk and single-cell RNA-Seq data analysis.

abstract：Background:Using wearable inertial sensors to accurately estimate energy expenditure (EE) during an athletic training process is important. Due to the characteristics of inertial sensors, however, the positions in which they are worn can produce signals of different natures. To understand and solve this issue, this stu...

journal_title：PeerJ

authors： Ho CS,Chang CH,Lin KC,Huang CC,Hsu YJ

更新日期：2019-11-04 00:00:00

abstract：:The coevolutionary relationships between brood parasites and their hosts are often studied by examining the egg rejection behaviour of host species using artificial eggs. However, the traditional methods for producing artificial eggs out of plasticine, plastic, wood, or plaster-of-Paris are laborious, imprecise, and p...

journal_title：PeerJ

authors： Igic B,Nunez V,Voss HU,Croston R,Aidala Z,López AV,Van Tatenhove A,Holford ME,Shawkey MD,Hauber ME

更新日期：2015-05-26 00:00:00

abstract：Background and Purpose:Several studies have proposed that the advanced lung cancer inflammation index (ALI), a new inflammation-related index, can be used for the prognosis assessment of various malignancies. However, few studies have reported its prognostic value in colorectal cancer (CRC). Therefore, this study explo...

journal_title：PeerJ

authors： Xie H,Huang S,Yuan G,Kuang J,Yan L,Wei L,Tang S,Gan J

更新日期：2020-10-08 00:00:00

abstract：:Although the existence of coral-reef habitats at depths to 165 m in tropical regions has been known for decades, the richness, diversity, and ecological importance of mesophotic coral ecosystems (MCEs) has only recently become widely acknowledged. During an interdisciplinary effort spanning more than two decades, we c...

journal_title：PeerJ

authors： Pyle RL,Boland R,Bolick H,Bowen BW,Bradley CJ,Kane C,Kosaki RK,Langston R,Longenecker K,Montgomery A,Parrish FA,Popp BN,Rooney J,Smith CM,Wagner D,Spalding HL

更新日期：2016-10-04 00:00:00

abstract：BACKGROUND AND AIMS:Cryptic peracarids are an important component of the coral reef fauna in terms of diversity and abundance, yet they have been poorly studied. The aim of this study was to evaluate the taxonomic richness and abundance of cryptic peracarids in coral rubble in the Puerto Morelos Reef National Park, Mex...

journal_title：PeerJ

authors： Monroy-Velázquez LV,Rodríguez-Martínez RE,Alvarez F

更新日期：2017-06-15 00:00:00

abstract：Background:In idiopathic sudden sensorineural hearing loss (ISSNHL), the relationship between the administration duration of vitamin B12 (vit B12) with adenosine triphosphate (ATP) and their therapeutic effect is not fully understood. Objective:To investigate the therapeutic effect of long-term 16 (≥weeks) administrat...

journal_title：PeerJ

authors： Kurioka T,Sano H,Furuki S,Yamashita T

更新日期：2020-12-16 00:00:00

abstract：:The evolutionarily conserved Mediator complex is a critical player in regulating transcription. Comprised of approximately two dozen proteins, the Mediator integrates diverse regulatory signals through direct protein-protein interactions that, in turn, modulate the influence of Mediator on RNA Polymerase II activity. ...

journal_title：PeerJ

authors： Kostrouchová M,Kostrouch D,Chughtai AA,Kaššák F,Novotný JP,Kostrouchová V,Benda A,Krause MW,Saudek V,Kostrouchová M,Kostrouch Z

更新日期：2017-06-06 00:00:00

abstract：Background and Purpose:Oxidative stress is involved in normal and pathological functioning of skeletal muscle. Protection of myoblasts from oxidative stress may improve muscle contraction and delay aging. Here we studied the effect of R. coriaria sumac fruit extract on human myoblasts and zebrafish embryos in condition...

journal_title：PeerJ

authors： Najjar F,Rizk F,Carnac G,Nassar R,Jabak S,Sobolev AP,Bou Saada Y,El Sabban M,Hamade A

更新日期：2017-12-12 00:00:00

abstract：BACKGROUND:Profiling of microbial communities via metagenomic shotgun sequencing has enabled researches to gain unprecedented insight into microbial community structure and the functional roles of community members. This study describes a method and basic analysis for a metagenomic adaptation of the double digest restr...

journal_title：PeerJ

authors： Liu MY,Worden P,Monahan LG,DeMaere MZ,Burke CM,Djordjevic SP,Charles IG,Darling AE

更新日期：2017-09-19 00:00:00

abstract：Background:Biopesticides based on strains of the bacterium Bacillus thuringiensis (Bt) are used globally for effective and environmentally friendly pest control. The most serious threat to the sustainable use of these microbial pesticides is the development of resistance on targeted pests. Populations of Plutella xylos...

journal_title：PeerJ

authors： Baragamaarachchi RY,Samarasekera JKRR,Weerasena OVDSJ,Lamour K,Jurat-Fuentes JL

更新日期：2019-08-23 00:00:00

abstract：BACKGROUND:Cloud forests, characterized by a persistent, frequent or seasonal low-level cloud cover and fragmented distribution, are one of the most threatened habitats, especially in the Neotropics. Tree ferns are among the most conspicuous elements in these forests, and ferns are restricted to regions in which minimu...

journal_title：PeerJ

authors： Sosa V,Ornelas JF,Ramírez-Barahona S,Gándara E

更新日期：2016-11-16 00:00:00

abstract：:Background. Two non-tuberculous mycobacterial strains, UM_3 and UM_11, were isolated from the trunk wash of captive elephants in Malaysia. As they appeared to be identical phenotypes, they were investigated further by conventional and whole genome sequence-based methods of strain differentiation. Methods. Multiphasic ...

journal_title：PeerJ

authors： Chan KG,Loke MF,Ong BL,Wong YL,Hong KW,Tan KH,Kaur S,Ng HF,Abdul Razak M,Ngeow YF

更新日期：2015-11-10 00:00:00

abstract：:This article describes or redescribes four hexactinellid sponges, namely Poliopogon amadou, Euplectella sanctipauli sp. nov., Bolosoma perezi sp. nov. and Advhena magnifica gen. et sp. nov. P. amadou, E. sanctipauli sp. nov. and B. perezi sp. nov. represent new findings for the South Atlantic deep-sea fauna, including...

journal_title：PeerJ

authors： Castello-Branco C,Collins AG,Hajdu E

更新日期：2020-07-09 00:00:00

abstract：:Teeth have been a focus of research in both extinct and extant taxa alike; a significant portion of dental literature is concerned with dental patterning and replacement. Most non-mammalian vertebrates continuously replace their dentition but an anomalous group of squamates has forgone this process in only having one ...

journal_title：PeerJ

authors： Haridy Y

更新日期：2018-11-08 00:00:00

abstract：:The cost of enzymes makes enzymatic hydrolysis one of the most expensive steps in the production of lignocellulosic ethanol. Diverse studies have used commercial enzyme cocktails assuming that change in total protein concentration during hydrolysis was solely due to adsorption of endo- and exoglucanases onto the subst...

journal_title：PeerJ

authors： Rosales-Calderon O,Trajano HL,Duff SJ

更新日期：2014-06-10 00:00:00

abstract：:Dung beetles of the subfamily Scarabaeinae are widely recognised as important providers of multiple ecosystem services and are currently experiencing revisions that have improved our understanding of higher-level relationships in the subfamily. However, the study of phylogenetic relationships at the level of genus or ...

journal_title：PeerJ

authors： Pardo-Diaz C,Lopera Toro A,Peña Tovar SA,Sarmiento-Garcés R,Sanchez Herrera M,Salazar C

更新日期：2019-08-05 00:00:00

abstract：Background:Much of the shape variation found in animals is based on allometry and heterochrony. Horses represent an excellent model to investigate patterns of size-shape variation among breeds that were intentionally bred for extreme small and large sizes. Methods:We tested whether ponies (wither height < 148 cm) have...

journal_title：PeerJ

authors： Heck L,Sanchez-Villagra MR,Stange M

更新日期：2019-09-16 00:00:00

abstract：:A period of starvation is regarded as a sound practice in aquaculture prior to handling, transportation and harvest, to minimise impacts on welfare and ensure proper hygiene after harvest. However, documentation of welfare issues such as stress following starvation and handling in adult Atlantic salmon are lacking. Th...

journal_title：PeerJ

authors： Waagbø R,Jørgensen SM,Timmerhaus G,Breck O,Olsvik PA

更新日期：2017-04-27 00:00:00

abstract：Background:Parkinson's disease (PD) is the second most common neurodegenerative disorder. In addition to its highly debilitating motor symptoms, non-motor symptoms may precede their motor counterparts by many years, which may characterize a prodromal phase of PD. A potential pharmacological strategy is to introduce neu...

journal_title：PeerJ

authors： Benvenutti R,Marcon M,Reis CG,Nery LR,Miguel C,Herrmann AP,Vianna MRM,Piato A

更新日期：2018-06-01 00:00:00

abstract：Background:Endometrial cancer poses a serious threat to women's health worldwide, and its pathogenesis, although actively explored, is not fully understood. DLGAP5 is a recently identified cell cycle-regulation gene not reported in endometrial cancer. This study was aiming to analyze the role of DLGAP5 in tumorigenesis...

journal_title：PeerJ

authors： Zheng R,Shi Z,Li W,Yu J,Wang Y,Zhou Q

更新日期：2020-11-27 00:00:00

abstract：Background:Skeletal muscle wound healing is dependent on complex interactions between fibroblasts, myofibroblasts, myogenic cells, and cytokines, such as TGF-β1. This study sought to clarify the impact of TGF-β1 signaling on skeletal muscle cells and discern between the individual contributions of fibroblasts and myofi...

journal_title：PeerJ

authors： Krieger J,Park BW,Lambert CR,Malcuit C

更新日期：2018-07-11 00:00:00

abstract：:Background. Geriatric syndromes (GS) exhibit high prevalence in patients with end-stage renal disease (ESRD) under chronic dialysis irrespective of age. We sought to determine whether GS influences medication adherence in ESRD patients. Methods. A prospective cohort of chronic dialysis patients was assembled. The pres...

journal_title：PeerJ

authors： Chao CT,Huang JW,COGENT (COhort of GEriatric Nephrology in NTUH) study group.

更新日期：2016-06-14 00:00:00

abstract：:Single-cell analysis has the potential to provide us with a host of new knowledge about biological systems, but it comes with the challenge of correctly interpreting the biological information. While emerging techniques have made it possible to measure inter-cellular variability at the transcriptome level, no consensu...

journal_title：PeerJ

authors： Kippner LE,Kim J,Gibson G,Kemp ML

更新日期：2014-06-24 00:00:00

abstract：:The fates of genetic polymorphisms maintained by balancing selection depend on evolutionary dynamics at linked sites. While coevolution across linked, epigenetically-interacting loci has been extensively explored, such supergenes may be relatively rare. However, genes harboring adaptive variation can occur in close ph...

journal_title：PeerJ

authors： Tennessen JA

更新日期：2018-06-28 00:00:00

abstract：:Advances in sequencing techniques have led to exponential growth in biological data, demanding the development of large-scale bioinformatics experiments. Because these experiments are computation- and data-intensive, they require high-performance computing techniques and can benefit from specialized technologies such ...

journal_title：PeerJ

authors： Mondelli ML,Magalhães T,Loss G,Wilde M,Foster I,Mattoso M,Katz D,Barbosa H,de Vasconcelos ATR,Ocaña K,Gadelha LMR Jr

更新日期：2018-08-29 00:00:00

abstract：:We describe Atrimitra isolata sp. n. (Gastropoda: Mitridae), collected on the summit of seamounts (~200 m water depth) in the vicinity of Desventuradas Islands, Chile insular territory. Additionally, we provide some insight into the habitat of this new species based on underwater imagery taken with a remotely operated...

journal_title：PeerJ

authors： Sellanes J,Salisbury RA,Tapia JM,Asorey CM

更新日期：2019-12-20 00:00:00

abstract：:The exploration of the evolution of RNA viruses has been aided recently by the discovery of copies of fragments or complete genomes of non-retroviral RNA viruses (Non-retroviral Endogenous RNA Viral Elements, or NERVEs) in many eukaryotic nuclear genomes. Among the most prominent NERVEs are partial copies of the RNA d...

journal_title：PeerJ

authors： Bruenn JA,Warner BE,Yerramsetty P

更新日期：2015-04-09 00:00:00

abstract：:In highly biodiverse systems, such as coral reefs, prey species are faced with predatory threats from numerous species. Recognition of predators can be innate, or learned, and can help increase the chance of survival. Research suggests that parental exposure to increased predatory threats can affect the development, b...

journal_title：PeerJ

authors： Atherton JA,McCormick MI

更新日期：2020-06-18 00:00:00

abstract：:One of the best ex situ conservation strategies for wild germplasm is in vitro conservation of genetic banks. The success of in vitro conservation relies heavily on the micropropagation or performance of the species of interest. In the context of global change, crop production challenges and climate change, we face a ...

journal_title：PeerJ

authors： Hernández-Terán A,Wegier A,Benítez M,Lira R,Sosa Fuentes TG,Escalante AE

更新日期：2019-06-10 00:00:00

abstract：Background:The Aegean Sea coast of Turkey hosts one of the most important nesting grounds for loggerhead sea turtles (Caretta caretta) in the Mediterranean Sea. Previous studies have revealed that the sea turtle carapace provides favourable conditions for various epibiontic organisms. Epibionts occurring on the carapac...

journal_title：PeerJ

authors： Kaleli A,Car A,Witkowski A,Krzywda M,Riaux-Gobin C,Solak CN,Kaska Y,Zgłobicka I,Płociński T,Wróbel R,Kurzydłowski K

更新日期：2020-07-17 00:00:00