Abstract:
:Often ignored and regarded as mere transcriptional noise, long noncoding RNAs (lncRNAs) are starting to be considered key regulators of gene expression across the Eukarya domain of life. In the model diatom Phaeodactylum tricornutum, we have previously reported the occurrence of 1,510 intergenic lncRNAs (lincRNAs), many of which displaying specific patterns of expression under phosphate fluctuation (Pi). Using strand-specific RNA-sequencing data we now expand the repertoire of P. tricornutum lncRNAs by identifying 2,628 novel natural antisense transcripts (NATs) that cover 21.5% of the annotated genomic loci. We found that NAT expression is tightly regulated by phosphate depletion and other naturally occurring environmental stresses. Furthermore, we identified 121 phosphate stress responsive NAT-mRNA pairs, the great majority of which showing a positive correlation (concordant pairs) and a small fraction with negative correlation (discordant pairs). Taken together our results show that NATs are highly abundant transcripts in P. tricornutum and that their expression is under tight regulation by nutrient and environmental stresses. Furthermore, our results suggest that in P. tricornutum Pi stress response NAT pairs predominantly regulate positively the expression of their cognate sense genes, the latter being involved in several biological processes underlying the control of cellular homeostasis under stress.
journal_name
Sci Repjournal_title
Scientific reportsauthors
Cruz de Carvalho MH,Bowler Cdoi
10.1038/s41598-020-71002-0subject
Has Abstractpub_date
2020-08-24 00:00:00pages
14110issue
1issn
2045-2322pii
10.1038/s41598-020-71002-0journal_volume
10pub_type
杂志文章abstract::Memristive systems have gained considerable attention in the field of neuromorphic engineering, because they allow the emulation of synaptic functionality in solid state nano-physical systems. In this study, we show that memristive behavior provides a broad working framework for the phenomenological modelling of cellu...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-27616-6
更新日期:2018-06-19 00:00:00
abstract::Accumulating evidences have suggested the potential association between Int7G24A (rs334354) polymorphism and cancer risk. However, results from epidemiological studies are controversial. We thus conducted this meta-analysis to clarify the association. Relevant studies were identified on electronic databases according ...
journal_title:Scientific reports
pub_type: 杂志文章,meta分析
doi:10.1038/srep11350
更新日期:2015-06-15 00:00:00
abstract::Layered Li2RuO3 is an important candidate cathode material in rechargeable lithium ion batteries because of its novel anionic redox process and high reversible capacity. Atomistic scale simulations are used to calculate the intrinsic defect process, favourable dopants and migration energies of lithium ion diffusions t...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-36865-4
更新日期:2019-01-24 00:00:00
abstract::This study evaluated the 4-year results of 32 patients with T1N0 low-lying rectal adenocarcinoma treated solely with californium-252 (Cf-252) neutron intracavity brachytherapy (ICBT). Patients were solicited into the study from January 2008 to June 2011. All the patients had refused surgery or surgery was contraindica...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep40619
更新日期:2017-01-17 00:00:00
abstract::Antibiotic administration, while facilitating clearance of targeted infections, also perturbs commensal microbial communities. Previous studies have all focused on the effects of short term use of antibiotics. Here, we focus on the effects of long term use of antibiotic on gut microbiota and immunity. BALB/c mice rece...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep43035
更新日期:2017-02-21 00:00:00
abstract::When searching a target in a natural scene, it has been shown that both the target's visual properties and similarity to the background influence whether and how fast humans are able to find it. So far, it was unclear whether searchers adjust the dynamics of their eye movements (e.g., fixation durations, saccade ampli...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-37548-w
更新日期:2019-02-07 00:00:00
abstract::Reperfusion alters post-myocardial infarction (MI) healing; however, very few systematic studies report the early molecular changes following ischemia/reperfusion (I/R). Alterations in the remote myocardium have also been neglected, disregarding its contribution to post-MI heart failure (HF) development. This study ch...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-11985-5
更新日期:2017-09-27 00:00:00
abstract::Ligninolytic peroxidases are microbial enzymes involved in depolymerisation of lignin, a plant cell wall polymer found in land plants. Among fungi, only Dikarya were found to degrade lignin. The increase of available fungal genomes allows performing an expert annotation of lignin-degrading peroxidase encoding sequence...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-56774-4
更新日期:2019-12-30 00:00:00
abstract::Nutrient resorption processes in the plants infected by pathogen remain poorly understood. Huanglongbing (HLB) is a destructive disease of citrus. HLB-pathogen 'Candidatus Liberibacter asiaticus' grows specifically in the phloem of hosts and may cause problems in the plant vascular system after infection. Therefore, i...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep14675
更新日期:2015-09-30 00:00:00
abstract::The real time detection of quantitative oxygen release from the cathode is performed by in-situ Gas Chromatography as a tool to not only determine the amount of oxygen release from a lithium-ion cell but also to address the safety concerns. This in-situ gas chromatography technique monitoring the gas evolution during ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep23394
更新日期:2016-03-22 00:00:00
abstract::Due to their unique properties, Weyl semimetals (WSMs) are promising materials for the future electronics. Currently, the two types (I and II) of WSMs are discovered experimentally. These types of WSMs differ from each other in their topological properties. In this paper we showed that a coexistence of types I and II ...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-32104-y
更新日期:2018-09-12 00:00:00
abstract::The chemokine CCL3 is frequently overexpressed in malignancies and overexpression leads to microenvironmental dysfunction. In murine models of chronic myelogenous leukemia (CML), CCL3 is critical for the maintenance of a leukemia stem cell population, and leukemia progression. With CCL3 implicated as a potentially via...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-32978-y
更新日期:2018-10-02 00:00:00
abstract::Precise mitotic spindle orientation is essential for both cell fate and tissue organization while defects in this process are associated with tumorigenesis and other diseases. In most animal cell types, the dynein motor complex is anchored at the cell cortex and exerts pulling forces on astral microtubules to position...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-24682-8
更新日期:2018-04-20 00:00:00
abstract::Despite advances in diabetic wound care, the significant number of amputations that occur every year demands more effective therapeutics. Herein, we offer an aminated polyethersulfone nanofiber-expanded human umbilical cord blood-derived CD34+ cells (henceforth CD34+ cells) effective therapy, tested in cutaneous wound...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-44932-7
更新日期:2019-06-10 00:00:00
abstract::Development of tissue engineering scaffolds with native-like biology and microarchitectures is a prerequisite for stem cell mediated generation of off-the-shelf-tissues. So far, the field of tissue engineering has not full-filled its grand potential of engineering such combinatorial scaffolds for engineering functiona...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep30445
更新日期:2016-07-28 00:00:00
abstract::This study aimed to determine the performance and long-term outcomes of therapeutic ERCP in very old patients. Patients aged or over 90 (Group A, n = 78) and consecutive sex-matched controls (Group B, n = 312) under 65 selected were compared. More patients in Group A had chronic concomitant diseases, but the success a...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep04918
更新日期:2014-05-13 00:00:00
abstract::Extreme weather events (e.g., cyclones, floods, droughts) are capable of changing ecosystems and altering how animals obtain resources. Understanding the behavioural responses of animals being impacted by these natural events can help initiate and ameliorate conservation or management programs. This study investigated...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-50523-3
更新日期:2019-10-03 00:00:00
abstract::Nanodidamonds containing colour centres open up many applications in quantum information processing, metrology, and quantum sensing. However, controlling the synthesis of nanodiamonds containing silicon vacancy (SiV) centres is still not well understood. Here we study nanodiamonds produced by a high-pressure high-temp...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-21953-2
更新日期:2018-02-28 00:00:00
abstract::Bacterial NhaB Na+/H+ exchangers belonging to the Ion Transporter superfamily are poorly characterized in contrast to Na+/H+ exchangers of the Cation Proton Antiporter superfamily which have NhaA from Escherichia coli as a prominent member. For a more detailed understanding of the intricacies of the exchanger's transp...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-51887-2
更新日期:2019-10-28 00:00:00
abstract::Air pollution has been classified as a group 1 carcinogen in humans, but the underlying tumourigenic mechanisms remain unclear. In Xuanwei city of Yunnan Province, the lung cancer incidence is among the highest in China, owing to severe air pollution generated by the combustion of smoky coal, providing a unique opport...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep14331
更新日期:2015-09-23 00:00:00
abstract::A correction to this article has been published and is linked from the HTML version of this paper. The error has been fixed in the paper. ...
journal_title:Scientific reports
pub_type: 杂志文章,已发布勘误
doi:10.1038/s41598-018-19257-6
更新日期:2018-01-22 00:00:00
abstract::To investigate the influence of various factors on the two outcome parameters "procedure - specific complication" (femoral head necrosis, infection, nonunion, femoral neck shortening, screw loosening, implant penetration) and "functional outcome" in patients with displaced and undisplaced femoral neck fracture treated...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-57696-2
更新日期:2020-01-20 00:00:00
abstract::Functional Dyspepsia-Post-prandial Distress Syndrome (FD-PDS) was associated with mood-related increases in resting activity and lowered activation threshold in the somatosensory cortex (SSC), insula and perigenual anterior cingulate cortex(pgACC) in functional imaging studies. The underlying cortical neurochemical ch...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-017-04405-1
更新日期:2017-06-20 00:00:00
abstract::Knee osteoarthritis (OA) is the most common musculoskeletal disorder. OA diagnosis is currently conducted by assessing symptoms and evaluating plain radiographs, but this process suffers from subjectivity. In this study, we present a new transparent computer-aided diagnosis method based on the Deep Siamese Convolution...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-20132-7
更新日期:2018-01-29 00:00:00
abstract::In recent years, the monolithic material has been developed increasingly in the high performance liquid phase field, and it could also be applied in the field of catalyst, as a monolithic catalyst carrier, since it has a large specific surface area, and could be customized based on the mould. The monolithic catalyst i...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-35021-2
更新日期:2018-11-09 00:00:00
abstract::Of the 7-8 silk fibers making up an orb-web only the hierarchical structural organization of semicrystalline radial fibers -composed of major ampullate silk- has been studied in detail, given its fascinating mechanical features. While major ampullate silk's nanofibrillar morphology is well established, knowhow on meso...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-74638-0
更新日期:2020-10-23 00:00:00
abstract::The ERK signalling pathway regulates key cell fate decisions in the intestinal epithelium and is frequently dysregulated in colorectal cancers (CRCs). Variations in the dynamics of ERK activation can induce different biological outcomes and are regulated by multiple mechanisms, including activation of negative feedbac...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-018-20176-9
更新日期:2018-01-29 00:00:00
abstract::Polycrystalline CeGe is investigated by means of DC and AC susceptibility, non-linear DC susceptibility, electrical transport and heat capacity measurements in the low temperature regime. This compound shows two peaks at low magnetic field around TI ~ 10.7 and TII ~ 7.3 K due to antiferromagnetic ordering and subseque...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-019-41565-8
更新日期:2019-03-26 00:00:00
abstract::Th17 and regulatory T cells, involved in the pathogenesis of several autoimmune diseases, are new lineages of CD4+ T helper cells. However, the role of their imbalance in human leukocyte antigen B27-associated acute anterior uveitis has not been elucidated. In our study, the percentages of Th17 and Treg cells, their m...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/srep40414
更新日期:2017-01-16 00:00:00
abstract::The Toarcian Oceanic Anoxic Event (TOAE, Early Jurassic, ~182 Ma ago) was characterised by severe environmental perturbations which led to habitat degradation and extinction of marine species. Warming-induced anoxia is usually identified as main driver, but because marine life was also affected in oxygenated environme...
journal_title:Scientific reports
pub_type: 杂志文章
doi:10.1038/s41598-020-61393-5
更新日期:2020-03-13 00:00:00