当前位置： SCI文献检索 > Scientific Reports期刊下所有文献 > Phylogenomic analysis of trichomycterid catfishes (Teleostei: Siluriformes) inferred from ultraconserved elements.

Phylogenomic analysis of trichomycterid catfishes (Teleostei: Siluriformes) inferred from ultraconserved elements.

Abstract：

:The family Trichomycteridae is one of the most diverse groups of freshwater catfishes in South and Central America with eight subfamilies, 41 genera and more than 300 valid species. Its members are widely distributed throughout South America, reaching Costa Rica in Central America and are recognized by extraordinary anatomical specializations and trophic diversity. In order to assess the phylogenetic relationships of Trichomycteridae, we collected sequence data from ultraconserved elements (UCEs) of the genome from 141 specimens of Trichomycteridae and 12 outgroup species. We used a concatenated matrix to assess the phylogenetic relationships by Bayesian inference (BI) and maximum likelihood (ML) searches and a coalescent analysis of species trees. The results show a highly resolved phylogeny with broad agreement among the three distinct analyses, providing overwhelming support for the monophyletic status of subfamily Trichomycterinae including Ituglanis and Scleronema. Previous relationship hypotheses among subfamilies are strongly corroborated, such as the sister relationship between Copionodontinae and Trichogeninae forming a sister clade to the remaining trichomycterids and the intrafamilial clade TSVSG (Tridentinae-Stegophilinae-Vandelliinae-Sarcoglanidinae-Glanapteryginae). Monophyly of Glanapteryginae and Sarcoglanidinae was not supported and the enigmatic Potamoglanis is placed outside Tridentinae.

journal_name

Sci Rep

journal_title

Scientific reports

authors

Ochoa LE,Datovo A,DoNascimiento C,Roxo FF,Sabaj MH,Chang J,Melo BF,Silva GSC,Foresti F,Alfaro M,Oliveira C

doi

10.1038/s41598-020-59519-w

subject

Has Abstract

pub_date

2020-02-14 00:00:00

pages

2697

issue

1

issn

2045-2322

pii

10.1038/s41598-020-59519-w

journal_volume

10

pub_type

杂志文章

相关文献

Scientific Reports文献大全
  • Uncoupling of p97 ATPase activity has a dominant negative effect on protein extraction.

    abstract：:p97 is a highly abundant, homohexameric AAA+ ATPase that performs a variety of essential cellular functions. Characterized as a ubiquitin-selective chaperone, p97 recognizes proteins conjugated to K48-linked polyubiquitin chains and promotes their removal from chromatin and other molecular complexes. Changes in p97 ex...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-019-46949-4

    authors： Rycenga HB,Wolfe KB,Yeh ES,Long DT

    更新日期：2019-07-17 00:00:00

  • Evaluation of the safety profile of rotavirus vaccines: a pharmacovigilance analysis on American and European data.

    abstract：:Rotaviruses (RVs) are the most common cause of severe diarrheal disease. To date two rotavirus oral vaccines are licensed: Rotarix and Rotateq. Our aim was to contribute to the post-marketing evaluation of these vaccines safety profile. We collected all RV vaccines-related reports of Adverse Events Following Immunizat...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-020-70653-3

    authors： Bonaldo G,Noseda R,Ceschi A,Vaccheri A,Motola D

    更新日期：2020-08-12 00:00:00

  • Advanced P Wave Detection in Ecg Signals During Pathology: Evaluation in Different Arrhythmia Contexts.

    abstract：:Reliable P wave detection is necessary for accurate and automatic electrocardiogram (ECG) analysis. Currently, methods for P wave detection in physiological conditions are well-described and efficient. However, methods for P wave detection during pathology are not generally found in the literature, or their performanc...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-019-55323-3

    authors： Maršánová L,Němcová A,Smíšek R,Vítek M,Smital L

    更新日期：2019-12-13 00:00:00

  • Cortical spreading depolarisation-induced facial hyperalgesia, photophobia and hypomotility are ameliorated by sumatriptan and olcegepant.

    abstract：:Cortical spreading depolarisation (CSD), the neural mechanism underlying migraine aura, may cause headache by sensitising the trigeminal system. Photophobia, the most bothersome accompanying symptom during migraine attacks, is more prevalent in migraine with aura than in migraine without aura. Whether CSD plays a role...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-020-67948-w

    authors： Tang C,Unekawa M,Kitagawa S,Takizawa T,Kayama Y,Nakahara J,Shibata M

    更新日期：2020-07-10 00:00:00

  • Substantial blue carbon in overlooked Australian kelp forests.

    abstract：:Recognition of the potential for vegetated coastal ecosystems to store and sequester carbon has led to their increasing inclusion into global carbon budgets and carbon offset schemes. However, kelp forests have been overlooked in evaluations of this 'blue carbon', which have been limited to tidal marshes, mangrove for...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-020-69258-7

    authors： Filbee-Dexter K,Wernberg T

    更新日期：2020-07-23 00:00:00

  • The theoretical molecular weight of NaYF 4 :RE upconversion nanoparticles.

    abstract：:Upconversion nanoparticles (UCNPs) are utilized extensively for biomedical imaging, sensing, and therapeutic applications, yet the molecular weight of UCNPs has not previously been reported. Herein, we present a theory based upon the crystal structure of UCNPs to estimate the molecular weight of UCNPs: enabling insigh...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-018-19415-w

    authors： Mackenzie LE,Goode JA,Vakurov A,Nampi PP,Saha S,Jose G,Millner PA

    更新日期：2018-01-18 00:00:00

  • Advances in single-scan time-encoding magnetic resonance imaging.

    abstract：:Time-encoding MRI is a single-scan method that uses traditional k-encoding only in one direction. In the orthogonal "time-encoding" direction, a string of echoes appears in an order that depends on the position of the corresponding spin packets. In one variant of time-encoding, this is achieved by using a series of se...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-018-28460-4

    authors： Marhabaie S,Bodenhausen G,Pelupessy P

    更新日期：2018-07-18 00:00:00

  • Transcriptomic analysis identifies novel genes and pathways for salt stress responses in Suaeda salsa leaves.

    abstract：:Salinity is a critical abiotic stress, which significantly impacts the agricultural yield worldwide. Identification of the molecular mechanisms underlying the salt tolerance in euhalophyte Suaeda salsa is conducive to the development of salt-resistant crops. In the present study, high-throughput RNA sequencing was per...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-020-61204-x

    authors： Zhang X,Yao Y,Li X,Zhang L,Fan S

    更新日期：2020-03-06 00:00:00

  • Highly efficient CRISPR/Cas9-mediated transgene knockin at the H11 locus in pigs.

    abstract：:Transgenic pigs play an important role in producing higher quality food in agriculture and improving human health when used as animal models for various human diseases in biomedicine. Production of transgenic pigs, however, is a lengthy and inefficient process that hinders research using pig models. Recent application...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep14253

    authors： Ruan J,Li H,Xu K,Wu T,Wei J,Zhou R,Liu Z,Mu Y,Yang S,Ouyang H,Chen-Tsai RY,Li K

    更新日期：2015-09-18 00:00:00

  • Habitat fragmentation is associated to gut microbiota diversity of an endangered primate: implications for conservation.

    abstract：:The expansion of agriculture is shrinking pristine forest areas worldwide, jeopardizing the persistence of their wild inhabitants. The Udzungwa red colobus monkey (Procolobus gordonorum) is among the most threatened primate species in Africa. Primarily arboreal and highly sensitive to hunting and habitat destruction, ...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep14862

    authors： Barelli C,Albanese D,Donati C,Pindo M,Dallago C,Rovero F,Cavalieri D,Tuohy KM,Hauffe HC,De Filippo C

    更新日期：2015-10-07 00:00:00

  • Cucurbitacin B inhibits the stemness and metastatic abilities of NSCLC via downregulation of canonical Wnt/β-catenin signaling axis.

    abstract：:Lack of effective anti-metastatic drugs creates a major hurdle for metastatic lung cancer therapy. For successful lung cancer treatment, there is a strong need of newer therapeutics with metastasis-inhibitory potential. In the present study, we determined the anti-metastatic and anti-angiogenic potential of a natural ...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep21860

    authors： Shukla S,Sinha S,Khan S,Kumar S,Singh K,Mitra K,Maurya R,Meeran SM

    更新日期：2016-02-24 00:00:00

  • Effect of adipose-derived mesenchymal stem cell transplantation on vascular calcification in rats with adenine-induced kidney disease.

    abstract：:Previous studies have investigated the use of mesenchymal stem cells (MSCs) to treat damaged kidneys. However, the effect of adipose-derived MSCs (ASCs) on vascular calcification in chronic kidney disease (CKD) is still poorly understood. In the present study, we explored the potential of ASCs for the treatment of CKD...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-017-14492-9

    authors： Yokote S,Katsuoka Y,Yamada A,Ohkido I,Yokoo T

    更新日期：2017-10-25 00:00:00

  • Elucidating the Mechanism of Weissella-dependent Lifespan Extension in Caenorhabditis elegans.

    abstract：:The mechanism whereby lactic acid bacteria extend the lifespan of Caenorhabditis elegans has previously been elucidated. However, the role of Weissella species has yet not been studied. We show that Weissella koreensis and Weissella cibaria significantly (p < 0.05) extend the lifespan of C. elegans compared with Esche...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep17128

    authors： Lee J,Kwon G,Lim YH

    更新日期：2015-11-25 00:00:00

  • Human rhinovirus internal ribosome entry site element enhances transgene expression in transfected CHO-S cells.

    abstract：:Chinese hamster ovary (CHO) cells are mainly used for recombinant protein production. However, the unstable transgene expression and lower transgene copy numbers are the major issues need to be resolved. Here, eleven internal ribosome entry site (IRES) elements from viral and cellular IRES were evaluated for foreign g...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-018-25049-9

    authors： Chai YR,Ge MM,Wei TT,Jia YL,Guo X,Wang TY

    更新日期：2018-04-27 00:00:00

  • High-performance transparent and stretchable all-solid supercapacitors based on highly aligned carbon nanotube sheets.

    abstract：:By using highly aligned carbon nanotube (CNT) sheets of excellent optical transmittance and mechanical stretchability as both the current collector and active electrode, high-performance transparent and stretchable all-solid supercapacitors with a good stability were developed. A transmittance up to 75% at the wavelen...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep03612

    authors： Chen T,Peng H,Durstock M,Dai L

    更新日期：2014-01-09 00:00:00

  • Decrease of mRNA Editing after Spinal Cord Injury is Caused by Down-regulation of ADAR2 that is Triggered by Inflammatory Response.

    abstract：:We recently showed that spinal cord injury (SCI) leads to a decrease in mRNA editing of serotonin receptor 2C (5-HT2CR) contributing to post-SCI spasticity. Here we study post-SCI mRNA editing and global gene expression using massively parallel sequencing. Evidence is presented that the decrease in 5-HT2CR editing is ...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep12615

    authors： Di Narzo AF,Kozlenkov A,Ge Y,Zhang B,Sanelli L,May Z,Li Y,Fouad K,Cardozo C,Koonin EV,Bennett DJ,Dracheva S

    更新日期：2015-07-30 00:00:00

  • A novel method for evaluating antibody-dependent cell-mediated cytotoxicity by flowcytometry using cryopreserved human peripheral blood mononuclear cells.

    abstract：:Analyzing the cytotoxic functions of effector cells, such as NK cells against target cancer cells, is thought to be necessary for predicting the clinical efficacy of antibody-dependent cellular cytotoxicity (ADCC) -dependent antibody therapy. The (51)Cr release assay has long been the most widely used method for quant...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep19772

    authors： Yamashita M,Kitano S,Aikawa H,Kuchiba A,Hayashi M,Yamamoto N,Tamura K,Hamada A

    更新日期：2016-01-27 00:00:00

  • Ferroelectric control of a Mott insulator.

    abstract：:The electric field control of functional properties is an important goal in oxide-based electronics. To endow devices with memory, ferroelectric gating is interesting, but usually weak compared to volatile electrolyte gating. Here, we report a very large ferroelectric field-effect in perovskite heterostructures combin...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep02834

    authors： Yamada H,Marinova M,Altuntas P,Crassous A,Bégon-Lours L,Fusil S,Jacquet E,Garcia V,Bouzehouane K,Gloter A,Villegas JE,Barthélémy A,Bibes M

    更新日期：2013-10-03 00:00:00

  • Structure-based dynamic arrays in regulatory domains of sodium-calcium exchanger (NCX) isoforms.

    abstract：:Mammalian Na+/Ca2+ exchangers, NCX1 and NCX3, generate splice variants, whereas NCX2 does not. The CBD1 and CBD2 domains form a regulatory tandem (CBD12), where Ca2+ binding to CBD1 activates and Ca2+ binding to CBD2 (bearing the splicing segment) alleviates the Na+-induced inactivation. Here, the NCX2-CBD12, NCX3-CBD...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-017-01102-x

    authors： Giladi M,Lee SY,Ariely Y,Teldan Y,Granit R,Strulovich R,Haitin Y,Chung KY,Khananshvili D

    更新日期：2017-04-20 00:00:00

  • US Power Production at Risk from Water Stress in a Changing Climate.

    abstract：:Thermoelectric power production in the United States primarily relies on wet-cooled plants, which in turn require water below prescribed design temperatures, both for cooling and operational efficiency. Thus, power production in US remains particularly vulnerable to water scarcity and rising stream temperatures under ...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-017-12133-9

    authors： Ganguli P,Kumar D,Ganguly AR

    更新日期：2017-09-20 00:00:00

  • Low temperature-induced variation in plasma biochemical indices and aquaglyceroporin gene expression in the large yellow croaker Larimichthys crocea.

    abstract：:Low temperature influences multiple physiological processes in fish. To explore the adaptability of the large yellow croaker (Larimichthys crocea) to low temperature, the concentrations of glycerol, blood urea nitrogen (BUN), and triglycerides (TG) in plasma, as well as the expression levels of metabolism-related gene...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-018-37274-3

    authors： Liu C,Shen W,Hou C,Gao X,Wang Q,Wu X,Zhu J

    更新日期：2019-02-25 00:00:00

  • The Preparation and Properties of Porous Sepiolite Ceramics.

    abstract：:In this paper, a new type of porous ceramics was prepared using the raw sepiolite mineral. The porous ceramics was shaped by the dry pressing method and sintered in the range of 700 ~ 1200 °C. The temperature-microstructure evolution and the properties of porous sepiolite ceramics were investigated by thermo gravimetr...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-019-43918-9

    authors： Tian L,Wang L,Wang K,Zhang Y,Liang J

    更新日期：2019-05-14 00:00:00

  • Author Correction: Aerosol and surface contamination of SARS-CoV-2 observed in quarantine and isolation care.

    abstract：:An amendment to this paper has been published and can be accessed via a link at the top of the paper. ...

    journal_title：Scientific reports

    pub_type： 杂志文章,已发布勘误

    doi：10.1038/s41598-020-70939-6

    authors： Santarpia JL,Rivera DN,Herrera VL,Morwitzer MJ,Creager HM,Santarpia GW,Crown KK,Brett-Major DM,Schnaubelt ER,Broadhurst MJ,Lawler JV,Reid SP,Lowe JJ

    更新日期：2020-08-12 00:00:00

  • Dissecting the structural basis of MEIG1 interaction with PACRG.

    abstract：:The product of the meiosis-expressed gene 1 (MEIG1) is found in the cell bodies of spermatocytes and recruited to the manchette, a structure unique to elongating spermatids, by Parkin co-regulated gene (PACRG). This complex is essential for targeting cargo to the manchette during sperm flagellum assembly. Here we show...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep18278

    authors： Li W,Walavalkar NM,Buchwald WA,Teves ME,Zhang L,Liu H,Bilinovich S,Peterson DL,Strauss JF 3rd,Williams DC Jr,Zhang Z

    更新日期：2016-01-04 00:00:00

  • Enhancing near-infrared photoluminescence from single-walled carbon nanotubes by defect-engineering using benzoyl peroxide.

    abstract：:Single-walled carbon nanotubes (SWCNTs) have been modified with ester groups using typical organic radical chemistry. Consequently, traps for mobile excitons have been created, which enhanced the optical properties of the material. The proposed methodology combines the benefits of mainstream approaches to create lumin...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-020-76716-9

    authors： Przypis L,Krzywiecki M,Niidome Y,Aoki H,Shiraki T,Janas D

    更新日期：2020-11-16 00:00:00

  • Magnetic inhomogeneity on a triangular lattice: the magnetic-exchange versus the elastic energy and the role of disorder.

    abstract：:Inhomogeneity in the ground state is an intriguing, emergent phenomenon in magnetism. Recently, it has been observed in the magnetostructural channel of the geometrically frustrated α-NaMnO2, for the first time in the absence of active charge degrees of freedom. Here we report an in-depth numerical and local-probe exp...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/srep09272

    authors： Zorko A,Kokalj J,Komelj M,Adamopoulos O,Luetkens H,Arčon D,Lappas A

    更新日期：2015-03-19 00:00:00

  • Facile reduction of graphene oxide suspensions and films using glass wafers.

    abstract：:This paper reports a facile and green method for conversion of graphene oxide (GO) into graphene by low-temperature heating (80 °C) in the presence of a glass wafer. Compared to conventional GO chemical reduction methods, the presented approach is easy-scalable, operationally simple, and based on the use of a non-toxi...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-018-32488-x

    authors： Rabchinskii MK,Dideikin AT,Kirilenko DA,Baidakova MV,Shnitov VV,Roth F,Konyakhin SV,Besedina NA,Pavlov SI,Kuricyn RA,Lebedeva NM,Brunkov PN,Vul' AY

    更新日期：2018-09-20 00:00:00

  • Connectivity and population structure of albacore tuna across southeast Atlantic and southwest Indian Oceans inferred from multidisciplinary methodology.

    abstract：:Albacore tuna (Thunnus alalunga) is an important target of tuna fisheries in the Atlantic and Indian Oceans. The commercial catch of albacore is the highest globally among all temperate tuna species, contributing around 6% in weight to global tuna catches over the last decade. The accurate assessment and management of...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-020-72369-w

    authors： Nikolic N,Montes I,Lalire M,Puech A,Bodin N,Arnaud-Haond S,Kerwath S,Corse E,Gaspar P,Hollanda S,Bourjea J,West W,Bonhommeau S

    更新日期：2020-09-24 00:00:00

  • The response of a boreal deep-sea sponge holobiont to acute thermal stress.

    abstract：:Effects of elevated seawater temperatures on deep-water benthos has been poorly studied, despite reports of increased seawater temperature (up to 4 °C over 24 hrs) coinciding with mass mortality events of the sponge Geodia barretti at Tisler Reef, Norway. While the mechanisms driving these mortality events are unclear...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-017-01091-x

    authors： Strand R,Whalan S,Webster NS,Kutti T,Fang JKH,Luter HM,Bannister RJ

    更新日期：2017-05-22 00:00:00

  • Repeated administration of alpha-galactosylceramide ameliorates experimental lupus nephritis in mice.

    abstract：:Lupus nephritis is a crucial complication of systemic lupus erythematosus. In this study, we investigated the roles of mouse natural killer T (NKT) cells in lupus nephritis. From 24 weeks of age, NZB/NZW F1 mice were injected with alpha-galactosylceramide (α-GalCer) or vehicle once a week for four weeks. In the α-GalC...

    journal_title：Scientific reports

    pub_type： 杂志文章

    doi：10.1038/s41598-018-26470-w

    authors： Uchida T,Nakashima H,Yamagata A,Ito S,Ishikiriyama T,Nakashima M,Seki S,Kumagai H,Oshima N

    更新日期：2018-05-29 00:00:00