Chemotherapy-induced oral mucositis is associated with detrimental bacterial dysbiosis.

Abstract:

BACKGROUND:Gastrointestinal mucosal injury (mucositis), commonly affecting the oral cavity, is a clinically significant yet incompletely understood complication of cancer chemotherapy. Although antineoplastic cytotoxicity constitutes the primary injury trigger, the interaction of oral microbial commensals with mucosal tissues could modify the response. It is not clear, however, whether chemotherapy and its associated treatments affect oral microbial communities disrupting the homeostatic balance between resident microorganisms and the adjacent mucosa and if such alterations are associated with mucositis. To gain knowledge on the pathophysiology of oral mucositis, 49 subjects receiving 5-fluorouracil (5-FU) or doxorubicin-based chemotherapy were evaluated longitudinally during one cycle, assessing clinical outcomes, bacterial and fungal oral microbiome changes, and epithelial transcriptome responses. As a control for microbiome stability, 30 non-cancer subjects were longitudinally assessed. Through complementary in vitro assays, we also evaluated the antibacterial potential of 5-FU on oral microorganisms and the interaction of commensals with oral epithelial tissues. RESULTS:Oral mucositis severity was associated with 5-FU, increased salivary flow, and higher oral granulocyte counts. The oral bacteriome was disrupted during chemotherapy and while antibiotic and acid inhibitor intake contributed to these changes, bacteriome disruptions were also correlated with antineoplastics and independently and strongly associated with oral mucositis severity. Mucositis-associated bacteriome shifts included depletion of common health-associated commensals from the genera Streptococcus, Actinomyces, Gemella, Granulicatella, and Veillonella and enrichment of Gram-negative bacteria such as Fusobacterium nucleatum and Prevotella oris. Shifts could not be explained by a direct antibacterial effect of 5-FU, but rather resembled the inflammation-associated dysbiotic shifts seen in other oral conditions. Epithelial transcriptional responses during chemotherapy included upregulation of genes involved in innate immunity and apoptosis. Using a multilayer epithelial construct, we show mucositis-associated dysbiotic shifts may contribute to aggravate mucosal damage since the mucositis-depleted Streptococcus salivarius was tolerated as a commensal, while the mucositis-enriched F. nucleatum displayed pro-inflammatory and pro-apoptotic capacity. CONCLUSIONS:Altogether, our work reveals that chemotherapy-induced oral mucositis is associated with bacterial dysbiosis and demonstrates the potential for dysbiotic shifts to aggravate antineoplastic-induced epithelial injury. These findings suggest that control of oral bacterial dysbiosis could represent a novel preventive approach to ameliorate oral mucositis.

journal_name

Microbiome

journal_title

Microbiome

authors

Hong BY,Sobue T,Choquette L,Dupuy AK,Thompson A,Burleson JA,Salner AL,Schauer PK,Joshi P,Fox E,Shin DG,Weinstock GM,Strausbaugh LD,Dongari-Bagtzoglou A,Peterson DE,Diaz PI

doi

10.1186/s40168-019-0679-5

subject

Has Abstract

pub_date

2019-04-25 00:00:00

pages

66

issue

1

issn

2049-2618

pii

10.1186/s40168-019-0679-5

journal_volume

7

pub_type

杂志文章
  • Organophosphorus pesticide chlorpyrifos intake promotes obesity and insulin resistance through impacting gut and gut microbiota.

    abstract:BACKGROUND:Disruption of the gut microbiota homeostasis may induce low-grade inflammation leading to obesity-associated diseases. A major protective mechanism is to use the multi-layered mucus structures to keep a safe distance between gut epithelial cells and microbiota. To investigate whether pesticides would induce ...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-019-0635-4

    authors: Liang Y,Zhan J,Liu D,Luo M,Han J,Liu X,Liu C,Cheng Z,Zhou Z,Wang P

    更新日期:2019-02-11 00:00:00

  • (Dis)Trust your gut: the gut microbiome in age-related inflammation, health, and disease.

    abstract::Chronic inflammation represents one of the most consistent biologic features of aging. However, the precise etiology of persistent low-grade increases in inflammation remains unclear. Recent evidence suggests that the gut microbiome may play a key role in age-related inflammation. Indeed, several studies have indicate...

    journal_title:Microbiome

    pub_type: 杂志文章,评审

    doi:10.1186/s40168-017-0296-0

    authors: Buford TW

    更新日期:2017-07-14 00:00:00

  • Seasonal and algal diet-driven patterns of the digestive microbiota of the European abalone Haliotis tuberculata, a generalist marine herbivore.

    abstract:BACKGROUND:Holobionts have a digestive microbiota with catabolic abilities allowing the degradation of complex dietary compounds for the host. In terrestrial herbivores, the digestive microbiota is known to degrade complex polysaccharides from land plants while in marine herbivores, the digestive microbiota is poorly c...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-018-0430-7

    authors: Gobet A,Mest L,Perennou M,Dittami SM,Caralp C,Coulombet C,Huchette S,Roussel S,Michel G,Leblanc C

    更新日期:2018-03-27 00:00:00

  • Optimal screening and donor management in a public stool bank.

    abstract:BACKGROUND:Fecal microbiota transplantation is an effective treatment for recurrent Clostridium difficile infection and is being investigated as a treatment for other microbiota-associated diseases. To facilitate these activities, an international public stool bank has been created, which screens donors and processes s...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-015-0140-3

    authors: Kazerouni A,Burgess J,Burns LJ,Wein LM

    更新日期:2015-12-17 00:00:00

  • Antimicrobial-specific response from resistance gene carriers studied in a natural, highly diverse microbiome.

    abstract:BACKGROUND:Antimicrobial resistance (AMR) is a major threat to public health. Microorganisms equipped with AMR genes are suggested to have partially emerged from natural habitats; however, this hypothesis remains inconclusive so far. To understand the consequences of the introduction of exogenic antimicrobials into nat...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-020-00982-y

    authors: Wicaksono WA,Kusstatscher P,Erschen S,Reisenhofer-Graber T,Grube M,Cernava T,Berg G

    更新日期:2021-01-27 00:00:00

  • Specific gut microbiome members are associated with distinct immune markers in pediatric allogeneic hematopoietic stem cell transplantation.

    abstract:BACKGROUND:Increasing evidence reveals the importance of the microbiome in health and disease and inseparable host-microbial dependencies. Host-microbe interactions are highly relevant in patients receiving allogeneic hematopoietic stem cell transplantation (HSCT), i.e., a replacement of the cellular components of the ...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-019-0745-z

    authors: Ingham AC,Kielsen K,Cilieborg MS,Lund O,Holmes S,Aarestrup FM,Müller KG,Pamp SJ

    更新日期:2019-09-13 00:00:00

  • Metabolic capability and in situ activity of microorganisms in an oil reservoir.

    abstract:BACKGROUND:Microorganisms have long been associated with oxic and anoxic degradation of hydrocarbons in oil reservoirs and oil production facilities. While we can readily determine the abundance of microorganisms in the reservoir and study their activity in the laboratory, it has been challenging to resolve what microb...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-017-0392-1

    authors: Liu YF,Galzerani DD,Mbadinga SM,Zaramela LS,Gu JD,Mu BZ,Zengler K

    更新日期:2018-01-05 00:00:00

  • Diet shapes the gut microbiome of pigs during nursing and weaning.

    abstract:BACKGROUND:The newborn mammal is rapidly colonized by a complex microbial community, whose importance for host health is becoming increasingly clear. Understanding the forces that shape the early community, especially during the nursing period, is critical to gain insight into how this consortium of microbes is assembl...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-015-0091-8

    authors: Frese SA,Parker K,Calvert CC,Mills DA

    更新日期:2015-07-01 00:00:00

  • Quantifying the contribution of microbial immigration in engineered water systems.

    abstract::Immigration is a process that can influence the assembly of microbial communities in natural and engineered environments. However, it remains challenging to quantitatively evaluate the contribution of this process to the microbial diversity and function in the receiving ecosystems. Currently used methods, i.e., counti...

    journal_title:Microbiome

    pub_type: 杂志文章,评审

    doi:10.1186/s40168-019-0760-0

    authors: Mei R,Liu WT

    更新日期:2019-11-06 00:00:00

  • Direct and indirect effects of a pH gradient bring insights into the mechanisms driving prokaryotic community structures.

    abstract:BACKGROUND:pH is frequently reported as the main driver for prokaryotic community structure in soils. However, pH changes are also linked to "spillover effects" on other chemical parameters (e.g., availability of Al, Fe, Mn, Zn, and Cu) and plant growth, but these indirect effects on the microbial communities are rarel...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-018-0482-8

    authors: Lammel DR,Barth G,Ovaskainen O,Cruz LM,Zanatta JA,Ryo M,de Souza EM,Pedrosa FO

    更新日期:2018-06-11 00:00:00

  • Re-evaluating the relationship between missing heritability and the microbiome.

    abstract::Human genome-wide association studies (GWASs) have recurrently estimated lower heritability estimates than familial studies. Many explanations have been suggested to explain these lower estimates, including that a substantial proportion of genetic variation and gene-by-environment interactions are unmeasured in typica...

    journal_title:Microbiome

    pub_type: 信件

    doi:10.1186/s40168-020-00839-4

    authors: Douglas GM,Bielawski JP,Langille MGI

    更新日期:2020-06-08 00:00:00

  • Microbial diversity and community composition of caecal microbiota in commercial and indigenous Indian chickens determined using 16s rDNA amplicon sequencing.

    abstract:BACKGROUND:The caecal microbiota plays a key role in chicken health and performance, influencing digestion and absorption of nutrients, and contributing to defence against colonisation by invading pathogens. Measures of productivity and resistance to pathogen colonisation are directly influenced by chicken genotype, bu...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-018-0501-9

    authors: Pandit RJ,Hinsu AT,Patel NV,Koringa PG,Jakhesara SJ,Thakkar JR,Shah TM,Limon G,Psifidi A,Guitian J,Hume DA,Tomley FM,Rank DN,Raman M,Tirumurugaan KG,Blake DP,Joshi CG

    更新日期:2018-06-23 00:00:00

  • Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation.

    abstract:BACKGROUND:Enteric fermentation by farmed ruminant animals is a major source of methane and constitutes the second largest anthropogenic contributor to global warming. Reducing methane emissions from ruminants is needed to ensure sustainable animal production in the future. Methane yield varies naturally in sheep and i...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-016-0201-2

    authors: Kamke J,Kittelmann S,Soni P,Li Y,Tavendale M,Ganesh S,Janssen PH,Shi W,Froula J,Rubin EM,Attwood GT

    更新日期:2016-10-19 00:00:00

  • Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community.

    abstract::Recent studies have conflicting data regarding the presence of intra-amniotic microbiota. Viral communities are increasingly recognized as important although overlooked components of the human microbiota. It is unknown if the developing fetus is exposed to a community of viruses (virome). Given the debate over the exi...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-018-0475-7

    authors: Lim ES,Rodriguez C,Holtz LR

    更新日期:2018-05-11 00:00:00

  • The occurrence of potato common scab correlates with the community composition and function of the geocaulosphere soil microbiome.

    abstract:BACKGROUND:Soil microorganisms can mediate the occurrence of plant diseases. Potato common scab (CS) is a refractory disease caused by pathogenic Streptomyces that occurs worldwide, but little is known about the interactions between CS and the soil microbiome. In this study, four soil-root system compartments (geocaulo...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-019-0629-2

    authors: Shi W,Li M,Wei G,Tian R,Li C,Wang B,Lin R,Shi C,Chi X,Zhou B,Gao Z

    更新日期:2019-02-01 00:00:00

  • A metagenomic approach from aphid's hemolymph sheds light on the potential roles of co-existing endosymbionts.

    abstract:BACKGROUND:Aphids are known to live in symbiosis with specific bacteria, called endosymbionts which can be classified as obligate or accessory. Buchnera aphidicola is generally the only obligatory symbiont present in aphids, supplying essential nutrients that are missing in the plants phloem to its host. Pentalonia nig...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-015-0130-5

    authors: De Clerck C,Fujiwara A,Joncour P,Léonard S,Félix ML,Francis F,Jijakli MH,Tsuchida T,Massart S

    更新日期:2015-12-15 00:00:00

  • Two sampling methods yield distinct microbial signatures in the nasopharynges of asthmatic children.

    abstract:BACKGROUND:The nasopharynx is a reservoir for pathogens associated with respiratory illnesses, such as asthma. Next-generation sequencing (NGS) has been used to characterize the nasopharyngeal microbiome during health and disease. Most studies so far have surveyed the nasopharynx as a whole; however, less is known abou...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-016-0170-5

    authors: Pérez-Losada M,Crandall KA,Freishtat RJ

    更新日期:2016-06-16 00:00:00

  • Ruminal microbiome-host crosstalk stimulates the development of the ruminal epithelium in a lamb model.

    abstract:BACKGROUND:The development of the rumen is an important physiological challenge for young ruminants. Previous studies have shown that starter feeding can effectively facilitate the growth and development of the rumen in ruminants. However, the mechanism through which starter feeding stimulates the development of the ru...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-019-0701-y

    authors: Lin L,Xie F,Sun D,Liu J,Zhu W,Mao S

    更新日期:2019-06-03 00:00:00

  • Transplanted human fecal microbiota enhanced Guillain Barré syndrome autoantibody responses after Campylobacter jejuni infection in C57BL/6 mice.

    abstract:BACKGROUND:Campylobacter jejuni is the leading antecedent infection to the autoimmune neuropathy Guillain-Barré syndrome (GBS), which is accompanied by an autoimmune anti-ganglioside antibody attack on peripheral nerves. Previously, we showed that contrasting immune responses mediate C. jejuni induced colitis and autoi...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-017-0284-4

    authors: Brooks PT,Brakel KA,Bell JA,Bejcek CE,Gilpin T,Brudvig JM,Mansfield LS

    更新日期:2017-08-08 00:00:00

  • Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.

    abstract:BACKGROUND:Microbiome sequencing projects typically collect tens of millions of short reads per sample. Depending on the goals of the project, the short reads can either be subjected to direct sequence analysis or be assembled into longer contigs. The assembly of whole genomes from metagenomic sequencing reads is a ver...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-017-0233-2

    authors: Huson DH,Tappu R,Bazinet AL,Xie C,Cummings MP,Nieselt K,Williams R

    更新日期:2017-01-25 00:00:00

  • Wild bees and their nests host Paenibacillus bacteria with functional potential of avail.

    abstract:BACKGROUND:In previous studies, the gram-positive firmicute genus Paenibacillus was found with significant abundances in nests of wild solitary bees. Paenibacillus larvae is well-known for beekeepers as a severe pathogen causing the fatal honey bee disease American foulbrood, and other members of the genus are either s...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-018-0614-1

    authors: Keller A,Brandel A,Becker MC,Balles R,Abdelmohsen UR,Ankenbrand MJ,Sickel W

    更新日期:2018-12-22 00:00:00

  • Relative and contextual contribution of different sources to the composition and abundance of indoor air bacteria in residences.

    abstract:BACKGROUND:The study of the microbial communities in the built environment is of critical importance as humans spend the majority of their time indoors. While the microorganisms in living spaces, especially those in the air, can impact health and well-being, little is known of their identity and the processes that dete...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-015-0128-z

    authors: Miletto M,Lindow SE

    更新日期:2015-12-10 00:00:00

  • Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage.

    abstract:BACKGROUND:Dental calculus, calcified oral plaque biofilm, contains microbial and host biomolecules that can be used to study historic microbiome communities and host responses. Dental calculus does not typically accumulate as much today as historically, and clinical oral microbiome research studies focus primarily on ...

    journal_title:Microbiome

    pub_type: 历史文章,杂志文章

    doi:10.1186/s40168-019-0717-3

    authors: Velsko IM,Fellows Yates JA,Aron F,Hagan RW,Frantz LAF,Loe L,Martinez JBR,Chaves E,Gosden C,Larson G,Warinner C

    更新日期:2019-07-06 00:00:00

  • CopyRighter: a rapid tool for improving the accuracy of microbial community profiles through lineage-specific gene copy number correction.

    abstract:BACKGROUND:Culture-independent molecular surveys targeting conserved marker genes, most notably 16S rRNA, to assess microbial diversity remain semi-quantitative due to variations in the number of gene copies between species. RESULTS:Based on 2,900 sequenced reference genomes, we show that 16S rRNA gene copy number (GC...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/2049-2618-2-11

    authors: Angly FE,Dennis PG,Skarshewski A,Vanwonterghem I,Hugenholtz P,Tyson GW

    更新日期:2014-04-07 00:00:00

  • Correction to: An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men.

    abstract::Following publication of the original article [1], the authors reported an error in Fig. 2. The original Fig. 2 has been incorrectly replaced with the Supplementary Fig. 2. The correct Fig. 2 is presented here. ...

    journal_title:Microbiome

    pub_type: 杂志文章,已发布勘误

    doi:10.1186/s40168-020-00829-6

    authors: Armstrong AJS,Shaffer M,Nusbacher NM,Griesmer C,Fiorillo S,Schneider JM,Neff CP,Li SX,Fontenot AP,Campbell T,Palmer BE,Lozupone CA

    更新日期:2020-04-06 00:00:00

  • Bacteriophage-prokaryote dynamics and interaction within anaerobic digestion processes across time and space.

    abstract:BACKGROUND:Bacteriophage-prokaryote dynamics and interaction are believed to be important in governing microbiome composition and ecosystem functions, yet our limited knowledge of the spatial and temporal variation in phage and prokaryotic community compositions precludes accurate assessment of their roles and impacts....

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-017-0272-8

    authors: Zhang J,Gao Q,Zhang Q,Wang T,Yue H,Wu L,Shi J,Qin Z,Zhou J,Zuo J,Yang Y

    更新日期:2017-05-31 00:00:00

  • Host genetic variation in mucosal immunity pathways influences the upper airway microbiome.

    abstract:BACKGROUND:The degree to which host genetic variation can modulate microbial communities in humans remains an open question. Here, we performed a genetic mapping study of the microbiome in two accessible upper airway sites, the nasopharynx and the nasal vestibule, during two seasons in 144 adult members of a founder po...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-016-0227-5

    authors: Igartua C,Davenport ER,Gilad Y,Nicolae DL,Pinto J,Ober C

    更新日期:2017-02-01 00:00:00

  • Gut-dependent microbial translocation induces inflammation and cardiovascular events after ST-elevation myocardial infarction.

    abstract:BACKGROUND:Post-infarction cardiovascular remodeling and heart failure are the leading cause of myocardial infarction (MI)-driven death during the past decades. Experimental observations have involved intestinal microbiota in the susceptibility to MI in mice; however, in humans, identifying whether translocation of gut...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-018-0441-4

    authors: Zhou X,Li J,Guo J,Geng B,Ji W,Zhao Q,Li J,Liu X,Liu J,Guo Z,Cai W,Ma Y,Ren D,Miao J,Chen S,Zhang Z,Chen J,Zhong J,Liu W,Zou M,Li Y,Cai J

    更新日期:2018-04-03 00:00:00

  • Seasonal, spatial, and maternal effects on gut microbiome in wild red squirrels.

    abstract:BACKGROUND:Our understanding of gut microbiota has been limited primarily to findings from human and laboratory animals, but what shapes the gut microbiota in nature remains largely unknown. To fill this gap, we conducted a comprehensive study of gut microbiota of a well-studied North American red squirrel (Tamiasciuru...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/s40168-017-0382-3

    authors: Ren T,Boutin S,Humphries MM,Dantzer B,Gorrell JC,Coltman DW,McAdam AG,Wu M

    更新日期:2017-12-21 00:00:00

  • CloVR-ITS: Automated internal transcribed spacer amplicon sequence analysis pipeline for the characterization of fungal microbiota.

    abstract:BACKGROUND:Besides the development of comprehensive tools for high-throughput 16S ribosomal RNA amplicon sequence analysis, there exists a growing need for protocols emphasizing alternative phylogenetic markers such as those representing eukaryotic organisms. RESULTS:Here we introduce CloVR-ITS, an automated pipeline ...

    journal_title:Microbiome

    pub_type: 杂志文章

    doi:10.1186/2049-2618-1-6

    authors: White JR,Maddox C,White O,Angiuoli SV,Fricke WF

    更新日期:2013-02-04 00:00:00